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Cmc09g0249731 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc09g0249731
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationCMiso1.1chr09:15688803..15689063
RNA-Seq ExpressionCmc09g0249731
SyntenyCmc09g0249731
Gene Ontology termsGO:0006974 - cellular response to DNA damage stimulus (biological process)
GO:0015074 - DNA integration (biological process)
GO:0051276 - chromosome organization (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004386 - helicase activity (molecular function)
GO:0016491 - oxidoreductase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
GO:0050660 - flavin adenine dinucleotide binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBH05982.1 transposable element gene [Prunus dulcis]9.9e-2365.12Show/hide
Query:  MDDKYNALIKAQTWSLVLQTSSQNVIGSKWVFRPKQHPDGSIHRYKARLVAKGFHQNPTVDFFETFSPVIMAFTIRVILSVAISKG
        M  ++NALI   TW LV   S+QN+IG KWVFR K+HPDG+I RYKARLVAKGFHQ P VDF ETFSPV+   TIRV+L +A+S G
Subjt:  MDDKYNALIKAQTWSLVLQTSSQNVIGSKWVFRPKQHPDGSIHRYKARLVAKGFHQNPTVDFFETFSPVIMAFTIRVILSVAISKG

KAA0051295.1 putative mitochondrial protein [Cucumis melo var. makuwa]2.0e-2366.28Show/hide
Query:  MDDKYNALIKAQTWSLVLQTSSQNVIGSKWVFRPKQHPDGSIHRYKARLVAKGFHQNPTVDFFETFSPVIMAFTIRVILSVAISKG
        MD++Y+AL+KAQTW LV  +SSQ V+G KWVFR K++ DGSI  YK RLVAKGFHQ+  VDFFETFSPV+ A TIRVIL++A++ G
Subjt:  MDDKYNALIKAQTWSLVLQTSSQNVIGSKWVFRPKQHPDGSIHRYKARLVAKGFHQNPTVDFFETFSPVIMAFTIRVILSVAISKG

KAA0066133.1 putative mitochondrial protein [Cucumis melo var. makuwa]8.3e-3893.02Show/hide
Query:  MDDKYNALIKAQTWSLVLQTSSQNVIGSKWVFRPKQHPDGSIHRYKARLVAKGFHQNPTVDFFETFSPVIMAFTIRVILSVAISKG
        MDDKYNAL+KAQTWSLVL TSSQN+IGSKWVFRPKQHPDGSIHRYKARLVAKGFHQNP VDFFETFSP+IMA TIRVILSVAISKG
Subjt:  MDDKYNALIKAQTWSLVLQTSSQNVIGSKWVFRPKQHPDGSIHRYKARLVAKGFHQNPTVDFFETFSPVIMAFTIRVILSVAISKG

RVX03627.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]7.6e-2359.3Show/hide
Query:  MDDKYNALIKAQTWSLVLQTSSQNVIGSKWVFRPKQHPDGSIHRYKARLVAKGFHQNPTVDFFETFSPVIMAFTIRVILSVAISKG
        M ++Y+AL++  TW LV   SSQNV+G KW+FR K++ DGSI+R+KARLVAKGFHQ P++D+++TFSPV+   TIR++LSVA+S G
Subjt:  MDDKYNALIKAQTWSLVLQTSSQNVIGSKWVFRPKQHPDGSIHRYKARLVAKGFHQNPTVDFFETFSPVIMAFTIRVILSVAISKG

XP_016902198.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like isoform X2 [Cucumis melo]3.9e-2772.09Show/hide
Query:  MDDKYNALIKAQTWSLVLQTSSQNVIGSKWVFRPKQHPDGSIHRYKARLVAKGFHQNPTVDFFETFSPVIMAFTIRVILSVAISKG
        MD++Y+AL+KA TWSLV  + SQNV+GSKWVFR K+H DGSI RYKAR+VAKGFHQ+P VDFFETFSPVI A TIRV+LS+A+  G
Subjt:  MDDKYNALIKAQTWSLVLQTSSQNVIGSKWVFRPKQHPDGSIHRYKARLVAKGFHQNPTVDFFETFSPVIMAFTIRVILSVAISKG

TrEMBL top hitse value%identityAlignment
A0A1S4E1U4 uncharacterized mitochondrial protein AtMg00810-like isoform X21.9e-2772.09Show/hide
Query:  MDDKYNALIKAQTWSLVLQTSSQNVIGSKWVFRPKQHPDGSIHRYKARLVAKGFHQNPTVDFFETFSPVIMAFTIRVILSVAISKG
        MD++Y+AL+KA TWSLV  + SQNV+GSKWVFR K+H DGSI RYKAR+VAKGFHQ+P VDFFETFSPVI A TIRV+LS+A+  G
Subjt:  MDDKYNALIKAQTWSLVLQTSSQNVIGSKWVFRPKQHPDGSIHRYKARLVAKGFHQNPTVDFFETFSPVIMAFTIRVILSVAISKG

A0A438J3U4 Retrovirus-related Pol polyprotein from transposon RE13.7e-2359.3Show/hide
Query:  MDDKYNALIKAQTWSLVLQTSSQNVIGSKWVFRPKQHPDGSIHRYKARLVAKGFHQNPTVDFFETFSPVIMAFTIRVILSVAISKG
        M ++Y+AL++  TW LV   SSQNV+G KW+FR K++ DGSI+R+KARLVAKGFHQ P++D+++TFSPV+   TIR++LSVA+S G
Subjt:  MDDKYNALIKAQTWSLVLQTSSQNVIGSKWVFRPKQHPDGSIHRYKARLVAKGFHQNPTVDFFETFSPVIMAFTIRVILSVAISKG

A0A4Y1RVT7 Transposable element protein4.8e-2365.12Show/hide
Query:  MDDKYNALIKAQTWSLVLQTSSQNVIGSKWVFRPKQHPDGSIHRYKARLVAKGFHQNPTVDFFETFSPVIMAFTIRVILSVAISKG
        M  ++NALI   TW LV   S+QN+IG KWVFR K+HPDG+I RYKARLVAKGFHQ P VDF ETFSPV+   TIRV+L +A+S G
Subjt:  MDDKYNALIKAQTWSLVLQTSSQNVIGSKWVFRPKQHPDGSIHRYKARLVAKGFHQNPTVDFFETFSPVIMAFTIRVILSVAISKG

A0A5A7UCD7 Putative mitochondrial protein9.7e-2466.28Show/hide
Query:  MDDKYNALIKAQTWSLVLQTSSQNVIGSKWVFRPKQHPDGSIHRYKARLVAKGFHQNPTVDFFETFSPVIMAFTIRVILSVAISKG
        MD++Y+AL+KAQTW LV  +SSQ V+G KWVFR K++ DGSI  YK RLVAKGFHQ+  VDFFETFSPV+ A TIRVIL++A++ G
Subjt:  MDDKYNALIKAQTWSLVLQTSSQNVIGSKWVFRPKQHPDGSIHRYKARLVAKGFHQNPTVDFFETFSPVIMAFTIRVILSVAISKG

A0A5A7VD76 Putative mitochondrial protein4.0e-3893.02Show/hide
Query:  MDDKYNALIKAQTWSLVLQTSSQNVIGSKWVFRPKQHPDGSIHRYKARLVAKGFHQNPTVDFFETFSPVIMAFTIRVILSVAISKG
        MDDKYNAL+KAQTWSLVL TSSQN+IGSKWVFRPKQHPDGSIHRYKARLVAKGFHQNP VDFFETFSP+IMA TIRVILSVAISKG
Subjt:  MDDKYNALIKAQTWSLVLQTSSQNVIGSKWVFRPKQHPDGSIHRYKARLVAKGFHQNPTVDFFETFSPVIMAFTIRVILSVAISKG

SwissProt top hitse value%identityAlignment
P04146 Copia protein3.4e-1043.66Show/hide
Query:  TWSLVLQTSSQNVIGSKWVFRPKQHPDGSIHRYKARLVAKGFHQNPTVDFFETFSPVIMAFTIRVILSVAI
        TW++  +  ++N++ S+WVF  K +  G+  RYKARLVA+GF Q   +D+ ETF+PV    + R ILS+ I
Subjt:  TWSLVLQTSSQNVIGSKWVFRPKQHPDGSIHRYKARLVAKGFHQNPTVDFFETFSPVIMAFTIRVILSVAI

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-945.3e-1144.05Show/hide
Query:  MDDKYNALIKAQTWSLVLQTSSQNVIGSKWVFRPKQHPDGSIHRYKARLVAKGFHQNPTVDFFETFSPVIMAFTIRVILSVAIS
        M ++  +L K  T+ LV     +  +  KWVF+ K+  D  + RYKARLV KGF Q   +DF E FSPV+   +IR ILS+A S
Subjt:  MDDKYNALIKAQTWSLVLQTSSQNVIGSKWVFRPKQHPDGSIHRYKARLVAKGFHQNPTVDFFETFSPVIMAFTIRVILSVAIS

P92520 Uncharacterized mitochondrial protein AtMg008207.6e-1852.44Show/hide
Query:  MDDKYNALIKAQTWSLVLQTSSQNVIGSKWVFRPKQHPDGSIHRYKARLVAKGFHQNPTVDFFETFSPVIMAFTIRVILSVA
        M ++ +AL + +TW LV    +QN++G KWVF+ K H DG++ R KARLVAKGFHQ   + F ET+SPV+   TIR IL+VA
Subjt:  MDDKYNALIKAQTWSLVLQTSSQNVIGSKWVFRPKQHPDGSIHRYKARLVAKGFHQNPTVDFFETFSPVIMAFTIRVILSVA

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.4e-1647.67Show/hide
Query:  MDDKYNALIKAQTWSLVLQTSSQ-NVIGSKWVFRPKQHPDGSIHRYKARLVAKGFHQNPTVDFFETFSPVIMAFTIRVILSVAISK
        M  + NA I   TW LV    S   ++G +W+F  K + DGS++RYKARLVAKG++Q P +D+ ETFSPVI + +IR++L VA+ +
Subjt:  MDDKYNALIKAQTWSLVLQTSSQ-NVIGSKWVFRPKQHPDGSIHRYKARLVAKGFHQNPTVDFFETFSPVIMAFTIRVILSVAISK

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE24.2e-1647.67Show/hide
Query:  MDDKYNALIKAQTWSLV-LQTSSQNVIGSKWVFRPKQHPDGSIHRYKARLVAKGFHQNPTVDFFETFSPVIMAFTIRVILSVAISK
        M  + NA I   TW LV     S  ++G +W+F  K + DGS++RYKARLVAKG++Q P +D+ ETFSPVI + +IR++L VA+ +
Subjt:  MDDKYNALIKAQTWSLV-LQTSSQNVIGSKWVFRPKQHPDGSIHRYKARLVAKGFHQNPTVDFFETFSPVIMAFTIRVILSVAISK

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 89.6e-1643.9Show/hide
Query:  MDDKYNALIKAQTWSLVLQTSSQNVIGSKWVFRPKQHPDGSIHRYKARLVAKGFHQNPTVDFFETFSPVIMAFTIRVILSVA
        MDD+  A+    TW +     ++  IG KWV++ K + DG+I RYKARLVAKG+ Q   +DF ETFSPV    ++++IL+++
Subjt:  MDDKYNALIKAQTWSLVLQTSSQNVIGSKWVFRPKQHPDGSIHRYKARLVAKGFHQNPTVDFFETFSPVIMAFTIRVILSVA

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)5.4e-1952.44Show/hide
Query:  MDDKYNALIKAQTWSLVLQTSSQNVIGSKWVFRPKQHPDGSIHRYKARLVAKGFHQNPTVDFFETFSPVIMAFTIRVILSVA
        M ++ +AL + +TW LV    +QN++G KWVF+ K H DG++ R KARLVAKGFHQ   + F ET+SPV+   TIR IL+VA
Subjt:  MDDKYNALIKAQTWSLVLQTSSQNVIGSKWVFRPKQHPDGSIHRYKARLVAKGFHQNPTVDFFETFSPVIMAFTIRVILSVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGATAAATACAATGCTCTTATCAAGGCTCAAACATGGTCCTTAGTACTACAGACTTCATCTCAAAATGTCATTGGTAGCAAGTGGGTATTTCGACCAAAACAACA
TCCTGATGGGTCTATTCATCGCTATAAAGCCCGTTTAGTGGCCAAGGGGTTTCACCAAAATCCTACAGTGGACTTCTTTGAAACTTTCAGTCCTGTAATCATGGCGTTTA
CAATTCGTGTTATTTTGAGTGTTGCAATCTCTAAAGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGATAAATACAATGCTCTTATCAAGGCTCAAACATGGTCCTTAGTACTACAGACTTCATCTCAAAATGTCATTGGTAGCAAGTGGGTATTTCGACCAAAACAACA
TCCTGATGGGTCTATTCATCGCTATAAAGCCCGTTTAGTGGCCAAGGGGTTTCACCAAAATCCTACAGTGGACTTCTTTGAAACTTTCAGTCCTGTAATCATGGCGTTTA
CAATTCGTGTTATTTTGAGTGTTGCAATCTCTAAAGGATGA
Protein sequenceShow/hide protein sequence
MDDKYNALIKAQTWSLVLQTSSQNVIGSKWVFRPKQHPDGSIHRYKARLVAKGFHQNPTVDFFETFSPVIMAFTIRVILSVAISKG