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Cmc09g0250181 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc09g0250181
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationCMiso1.1chr09:16214111..16214500
RNA-Seq ExpressionCmc09g0250181
SyntenyCmc09g0250181
Gene Ontology termsGO:0009451 - RNA modification (biological process)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0066070.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]3.1e-6897.66Show/hide
Query:  QVNWAPTNHCTFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFHA
        +VNWAPTNH TFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSW SMIVGYTLNGKEDNAIMFFHA
Subjt:  QVNWAPTNHCTFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFHA

Query:  MLHNQVDCSPDYATLVSILPTYVTKFAS
        MLHNQVDCSPDYATLVSILPTYVTKFAS
Subjt:  MLHNQVDCSPDYATLVSILPTYVTKFAS

KAG6596261.1 Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]8.4e-5079.07Show/hide
Query:  MQVNWAPTNHCTFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFH
        M+V   PTN  TFPFVLKACGAMKN DKG+IV GHVLKCGLDLDLFV NALI FYSK QDVETA KVFD+M LRDIVSW SMI GYTLNGK D AIM FH
Subjt:  MQVNWAPTNHCTFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFH

Query:  AMLHNQVDCSPDYATLVSILPTYVTKFAS
        AMLHNQ  CSPD ATLV ILP  VTK AS
Subjt:  AMLHNQVDCSPDYATLVSILPTYVTKFAS

XP_011650274.1 pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Cucumis sativus]8.1e-5381.4Show/hide
Query:  MQVNWAPTNHCTFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFH
        M+V+  PTN  TFPFVLKACGAMKN+DKGEIV GHV+KCGLDLDLFV NALI FYSK QDVETA KVFDDM LRDIVSW SMIVGYTLNGKED AIMFFH
Subjt:  MQVNWAPTNHCTFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFH

Query:  AMLHNQVDCSPDYATLVSILPTYVTKFAS
        AMLHNQ DC+PD ATLV+ILP   TK AS
Subjt:  AMLHNQVDCSPDYATLVSILPTYVTKFAS

XP_022942131.1 pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucurbita moschata]8.4e-5079.07Show/hide
Query:  MQVNWAPTNHCTFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFH
        M+V   PTN  TFPFVLKACGAMKN DKG+IV GHVLKCGLDLDLFV NALI FYSK QDVETA KVFD+M LRDIVSW SMI GYTLNGK D AIM FH
Subjt:  MQVNWAPTNHCTFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFH

Query:  AMLHNQVDCSPDYATLVSILPTYVTKFAS
        AMLHNQ  CSPD ATLV ILP  VTK AS
Subjt:  AMLHNQVDCSPDYATLVSILPTYVTKFAS

XP_023540099.1 pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucurbita pepo subsp. pepo]8.4e-5079.07Show/hide
Query:  MQVNWAPTNHCTFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFH
        M+V   PTN  TFPFVLKACGAMKN DKG+IV GHVLKCGLDLDLFV NALI FYSK QDVETA KVFD+M LRDIVSW SMI GYTLNGK D AIM FH
Subjt:  MQVNWAPTNHCTFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFH

Query:  AMLHNQVDCSPDYATLVSILPTYVTKFAS
        AMLHNQ  CSPD ATLV ILP  VTK AS
Subjt:  AMLHNQVDCSPDYATLVSILPTYVTKFAS

TrEMBL top hitse value%identityAlignment
A0A0A0L101 Uncharacterized protein3.9e-5381.4Show/hide
Query:  MQVNWAPTNHCTFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFH
        M+V+  PTN  TFPFVLKACGAMKN+DKGEIV GHV+KCGLDLDLFV NALI FYSK QDVETA KVFDDM LRDIVSW SMIVGYTLNGKED AIMFFH
Subjt:  MQVNWAPTNHCTFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFH

Query:  AMLHNQVDCSPDYATLVSILPTYVTKFAS
        AMLHNQ DC+PD ATLV+ILP   TK AS
Subjt:  AMLHNQVDCSPDYATLVSILPTYVTKFAS

A0A5A7UCB1 Pentatricopeptide repeat-containing protein4.5e-4976.74Show/hide
Query:  MQVNWAPTNHCTFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFH
        M+V+  PTN  TFPFVLKACGA+KN+DKGEIV G+V+KCGLDLDLFV NALI  YSK QDVETA KVFDDM LRD VSW SMIVGYTLN +ED+AIMFFH
Subjt:  MQVNWAPTNHCTFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFH

Query:  AMLHNQVDCSPDYATLVSILPTYVTKFAS
        AMLHNQ DC PD ATLV+ILP   TK AS
Subjt:  AMLHNQVDCSPDYATLVSILPTYVTKFAS

A0A5A7VFY8 Pentatricopeptide repeat-containing protein1.5e-6897.66Show/hide
Query:  QVNWAPTNHCTFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFHA
        +VNWAPTNH TFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSW SMIVGYTLNGKEDNAIMFFHA
Subjt:  QVNWAPTNHCTFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFHA

Query:  MLHNQVDCSPDYATLVSILPTYVTKFAS
        MLHNQVDCSPDYATLVSILPTYVTKFAS
Subjt:  MLHNQVDCSPDYATLVSILPTYVTKFAS

A0A6J1FMZ9 pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like4.0e-5079.07Show/hide
Query:  MQVNWAPTNHCTFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFH
        M+V   PTN  TFPFVLKACGAMKN DKG+IV GHVLKCGLDLDLFV NALI FYSK QDVETA KVFD+M LRDIVSW SMI GYTLNGK D AIM FH
Subjt:  MQVNWAPTNHCTFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFH

Query:  AMLHNQVDCSPDYATLVSILPTYVTKFAS
        AMLHNQ  CSPD ATLV ILP  VTK AS
Subjt:  AMLHNQVDCSPDYATLVSILPTYVTKFAS

A0A6J1I919 pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like9.0e-5078.29Show/hide
Query:  MQVNWAPTNHCTFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFH
        M+V   PTN  TFPFVLKACGAMKN++KG+IV GHVLKCGLDLDLFV NALI FYSK QDVETA KVFD+M LRDIVSW SMI GYTLNGK D AIM FH
Subjt:  MQVNWAPTNHCTFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFH

Query:  AMLHNQVDCSPDYATLVSILPTYVTKFAS
        AMLHNQ  CSPD ATLV ILP  VTK AS
Subjt:  AMLHNQVDCSPDYATLVSILPTYVTKFAS

SwissProt top hitse value%identityAlignment
Q0WN60 Pentatricopeptide repeat-containing protein At1g184856.7e-1841.74Show/hide
Query:  NHCTFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFHAMLHNQVD
        +H T+P V+KAC  M +   G  V G V+K GL  D+FV NAL+ FY  +  V  A ++FD MP R++VSW SMI  ++ NG  + + +    M+    D
Subjt:  NHCTFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFHAMLHNQVD

Query:  CS--PDYATLVSILP
         +  PD ATLV++LP
Subjt:  CS--PDYATLVSILP

Q9FLZ9 Pentatricopeptide repeat-containing protein At5g393503.6e-1943.64Show/hide
Query:  TFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFHAMLHNQVDCSP
        T+PFV KA G +K+   G +V G +L+     D +V NAL+  Y  +  VE A  VFD M  RD++SW +MI GY  NG  ++A+M F  M++  VD   
Subjt:  TFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFHAMLHNQVDCSP

Query:  DYATLVSILP
        D+AT+VS+LP
Subjt:  DYATLVSILP

Q9LFL5 Pentatricopeptide repeat-containing protein At5g168603.6e-1942.02Show/hide
Query:  VNWAPTNHCTFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFHAM
        ++W P N+ TFPFV KACG + +   GE      L  G   ++FV NAL+  YS+ + +  A KVFD+M + D+VSW S+I  Y   GK   A+  F  M
Subjt:  VNWAPTNHCTFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFHAM

Query:  LHNQVDCSPDYATLVSILP
          N+  C PD  TLV++LP
Subjt:  LHNQVDCSPDYATLVSILP

Q9M9E2 Pentatricopeptide repeat-containing protein At1g15510, chloroplastic6.7e-1844.95Show/hide
Query:  TFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFHAMLHNQVDCSP
        TFP VL+ CG + +  +G+ V  HV++ G +LD+ V NALI  Y K  DV++A  +FD MP RDI+SW +MI GY  NG     +  F AM    VD  P
Subjt:  TFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFHAMLHNQVDCSP

Query:  DYATLVSIL
        D  TL S++
Subjt:  DYATLVSIL

Q9SS60 Pentatricopeptide repeat-containing protein At3g035802.7e-1939.29Show/hide
Query:  TFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFHAMLHNQVDCSP
        TFP V+KAC  + + + G++V   +L  G + DLFV NAL++ YS+   +  A +VFD+MP+RD+VSW S+I GY+ +G  + A+  +H + ++ +   P
Subjt:  TFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFHAMLHNQVDCSP

Query:  DYATLVSILPTY
        D  T+ S+LP +
Subjt:  DYATLVSILPTY

Arabidopsis top hitse value%identityAlignment
AT1G15510.1 Tetratricopeptide repeat (TPR)-like superfamily protein4.8e-1944.95Show/hide
Query:  TFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFHAMLHNQVDCSP
        TFP VL+ CG + +  +G+ V  HV++ G +LD+ V NALI  Y K  DV++A  +FD MP RDI+SW +MI GY  NG     +  F AM    VD  P
Subjt:  TFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFHAMLHNQVDCSP

Query:  DYATLVSIL
        D  TL S++
Subjt:  DYATLVSIL

AT1G18485.1 Pentatricopeptide repeat (PPR) superfamily protein4.8e-1941.74Show/hide
Query:  NHCTFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFHAMLHNQVD
        +H T+P V+KAC  M +   G  V G V+K GL  D+FV NAL+ FY  +  V  A ++FD MP R++VSW SMI  ++ NG  + + +    M+    D
Subjt:  NHCTFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFHAMLHNQVD

Query:  CS--PDYATLVSILP
         +  PD ATLV++LP
Subjt:  CS--PDYATLVSILP

AT3G03580.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.9e-2039.29Show/hide
Query:  TFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFHAMLHNQVDCSP
        TFP V+KAC  + + + G++V   +L  G + DLFV NAL++ YS+   +  A +VFD+MP+RD+VSW S+I GY+ +G  + A+  +H + ++ +   P
Subjt:  TFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFHAMLHNQVDCSP

Query:  DYATLVSILPTY
        D  T+ S+LP +
Subjt:  DYATLVSILPTY

AT5G16860.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.5e-2042.02Show/hide
Query:  VNWAPTNHCTFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFHAM
        ++W P N+ TFPFV KACG + +   GE      L  G   ++FV NAL+  YS+ + +  A KVFD+M + D+VSW S+I  Y   GK   A+  F  M
Subjt:  VNWAPTNHCTFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFHAM

Query:  LHNQVDCSPDYATLVSILP
          N+  C PD  TLV++LP
Subjt:  LHNQVDCSPDYATLVSILP

AT5G39350.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.5e-2043.64Show/hide
Query:  TFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFHAMLHNQVDCSP
        T+PFV KA G +K+   G +V G +L+     D +V NAL+  Y  +  VE A  VFD M  RD++SW +MI GY  NG  ++A+M F  M++  VD   
Subjt:  TFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFHAMLHNQVDCSP

Query:  DYATLVSILP
        D+AT+VS+LP
Subjt:  DYATLVSILP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGTCAATTGGGCACCCACAAATCATTGTACATTTCCTTTTGTGTTGAAGGCATGTGGCGCAATGAAGAACAATGACAAGGGTGAGATTGTTCGTGGACAT
GTTTTGAAATGTGGGTTGGACTTGGATTTATTTGTGGATAATGCTCTGATCGAGTTTTATTCTAAGTATCAGGACGTTGAAACTGCTTGTAAAGTGTTTGATGAT
ATGCCTCTGAGAGACATTGTGAGTTGGAAATCCATGATTGTTGGTTATACTTTAAATGGGAAAGAAGACAATGCTATAATGTTTTTTCATGCCATGTTGCATAAC
CAAGTTGATTGCTCACCTGATTATGCAACTCTTGTTTCGATTTTGCCTACTTATGTTACAAAATTTGCTTCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAAGTCAATTGGGCACCCACAAATCATTGTACATTTCCTTTTGTGTTGAAGGCATGTGGCGCAATGAAGAACAATGACAAGGGTGAGATTGTTCGTGGACAT
GTTTTGAAATGTGGGTTGGACTTGGATTTATTTGTGGATAATGCTCTGATCGAGTTTTATTCTAAGTATCAGGACGTTGAAACTGCTTGTAAAGTGTTTGATGAT
ATGCCTCTGAGAGACATTGTGAGTTGGAAATCCATGATTGTTGGTTATACTTTAAATGGGAAAGAAGACAATGCTATAATGTTTTTTCATGCCATGTTGCATAAC
CAAGTTGATTGCTCACCTGATTATGCAACTCTTGTTTCGATTTTGCCTACTTATGTTACAAAATTTGCTTCCTAA
Protein sequenceShow/hide protein sequence
MQVNWAPTNHCTFPFVLKACGAMKNNDKGEIVRGHVLKCGLDLDLFVDNALIEFYSKYQDVETACKVFDDMPLRDIVSWKSMIVGYTLNGKEDNAIMFFHAMLHN
QVDCSPDYATLVSILPTYVTKFAS