CuGenDBv2

Gene ID	Cmc09g0250841
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty1-copia retrotransposon protein
Genome location	CMiso1.1chr09:16898269..16898772
RNA-Seq Expression	Cmc09g0250841
Synteny	Cmc09g0250841
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR025724 - GAG-pre-integrase domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0045258.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

1.6e-64

78.92

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Query:  KAILKLTSEKTLSLSNALYVPSLRSNLVSGSLLNRTGLKIVLEGDKVRLTKNEEFIGKGYLSNGLFVLNIVSMNLNAFNLAYIVEFVDIWHGRLGHVNFA
        K ILKLTS KTLSLSN LYVPSLR NLVSGSLLNR GLKIVLEGDKV LTKN +F+GKGYLSNGLFVLN +SMN NA +  Y++E V++WHGRLGHVNFA
Subjt:  KAILKLTSEKTLSLSNALYVPSLRSNLVSGSLLNRTGLKIVLEGDKVRLTKNEEFIGKGYLSNGLFVLNIVSMNLNAFNLAYIVEFVDIWHGRLGHVNFA

Query:  SIRKLKDLRLIDTSESHESDKCSVYVESKFFKKPFKSVESRSTDLLELIHSDLADFKNTTSRCGKN
        SIRKLKDLRLI+TSESHE+ KC + VESKF KKPFK V+SR+ DLLELIHSDLADF+ TTSR GKN
Subjt:  SIRKLKDLRLIDTSESHESDKCSVYVESKFFKKPFKSVESRSTDLLELIHSDLADFKNTTSRCGKN

KAA0048277.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

2.7e-64

78.31

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Query:  KAILKLTSEKTLSLSNALYVPSLRSNLVSGSLLNRTGLKIVLEGDKVRLTKNEEFIGKGYLSNGLFVLNIVSMNLNAFNLAYIVEFVDIWHGRLGHVNFA
        K ILKLTS+KTLSLSN LYVPSLR NLVSGSLLNR GLKIVLEGDKV LTKN +F+GKGYLSNGLFVLN +SMN NA + AY++E  ++WHGRLGHVNFA
Subjt:  KAILKLTSEKTLSLSNALYVPSLRSNLVSGSLLNRTGLKIVLEGDKVRLTKNEEFIGKGYLSNGLFVLNIVSMNLNAFNLAYIVEFVDIWHGRLGHVNFA

Query:  SIRKLKDLRLIDTSESHESDKCSVYVESKFFKKPFKSVESRSTDLLELIHSDLADFKNTTSRCGKN
        SIRKLKDLRLI+TSE+HE+ KCSV +ESKF KKPFK VE R+T+LLELIHSDLADF+ T SR GKN
Subjt:  SIRKLKDLRLIDTSESHESDKCSVYVESKFFKKPFKSVESRSTDLLELIHSDLADFKNTTSRCGKN

KAA0053084.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

8.2e-66

80.12

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Query:  KAILKLTSEKTLSLSNALYVPSLRSNLVSGSLLNRTGLKIVLEGDKVRLTKNEEFIGKGYLSNGLFVLNIVSMNLNAFNLAYIVEFVDIWHGRLGHVNFA
        K ILKLTS KTLSLSN LYVPSLR NLVSG+LLNR  LKIVLEGDKV LTKN EF+GKGYLSNGLFVLN +SMN+NA +  Y++EFV++WHGRLGHVNFA
Subjt:  KAILKLTSEKTLSLSNALYVPSLRSNLVSGSLLNRTGLKIVLEGDKVRLTKNEEFIGKGYLSNGLFVLNIVSMNLNAFNLAYIVEFVDIWHGRLGHVNFA

Query:  SIRKLKDLRLIDTSESHESDKCSVYVESKFFKKPFKSVESRSTDLLELIHSDLADFKNTTSRCGKN
        SIRKLKDLRLI+TS+SHE+ KC + VESKF KKPFK VESR+TDLLELIHSDLADFK TTSR GKN
Subjt:  SIRKLKDLRLIDTSESHESDKCSVYVESKFFKKPFKSVESRSTDLLELIHSDLADFKNTTSRCGKN

TYK21057.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

9.1e-65

78.31

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Query:  KAILKLTSEKTLSLSNALYVPSLRSNLVSGSLLNRTGLKIVLEGDKVRLTKNEEFIGKGYLSNGLFVLNIVSMNLNAFNLAYIVEFVDIWHGRLGHVNFA
        K ILKLTS KT SL N LYVPSLR NLVSGSLLNR GLKIVLEGDKV LTKNE+F+GKGYLSNGLFVLNI+S+N NA + AY++E+ ++WHGRLGHVNF 
Subjt:  KAILKLTSEKTLSLSNALYVPSLRSNLVSGSLLNRTGLKIVLEGDKVRLTKNEEFIGKGYLSNGLFVLNIVSMNLNAFNLAYIVEFVDIWHGRLGHVNFA

Query:  SIRKLKDLRLIDTSESHESDKCSVYVESKFFKKPFKSVESRSTDLLELIHSDLADFKNTTSRCGKN
        SIRKLKDLRLI+TSESHE+ KC + VESKF KKPFK VESR+TDLLELIHSDLA+F+ TTSR GKN
Subjt:  SIRKLKDLRLIDTSESHESDKCSVYVESKFFKKPFKSVESRSTDLLELIHSDLADFKNTTSRCGKN

TYK29957.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

8.2e-66

80.12

Show/hide

Query:  KAILKLTSEKTLSLSNALYVPSLRSNLVSGSLLNRTGLKIVLEGDKVRLTKNEEFIGKGYLSNGLFVLNIVSMNLNAFNLAYIVEFVDIWHGRLGHVNFA
        K ILKLTS KTLSLSN LYVPSLR NLVSG+LLNR  LKIVLEGDKV LTKN EF+GKGYLSNGLFVLN +SMN+NA +  Y++EFV++WHGRLGHVNFA
Subjt:  KAILKLTSEKTLSLSNALYVPSLRSNLVSGSLLNRTGLKIVLEGDKVRLTKNEEFIGKGYLSNGLFVLNIVSMNLNAFNLAYIVEFVDIWHGRLGHVNFA

Query:  SIRKLKDLRLIDTSESHESDKCSVYVESKFFKKPFKSVESRSTDLLELIHSDLADFKNTTSRCGKN
        SIRKLKDLRLI+TS+SHE+ KC + VESKF KKPFK VESR+TDLLELIHSDLADFK TTSR GKN
Subjt:  SIRKLKDLRLIDTSESHESDKCSVYVESKFFKKPFKSVESRSTDLLELIHSDLADFKNTTSRCGKN

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TQW7 Ty1-copia retrotransposon protein

7.5e-65

78.92

Show/hide

Query:  KAILKLTSEKTLSLSNALYVPSLRSNLVSGSLLNRTGLKIVLEGDKVRLTKNEEFIGKGYLSNGLFVLNIVSMNLNAFNLAYIVEFVDIWHGRLGHVNFA
        K ILKLTS KTLSLSN LYVPSLR NLVSGSLLNR GLKIVLEGDKV LTKN +F+GKGYLSNGLFVLN +SMN NA +  Y++E V++WHGRLGHVNFA
Subjt:  KAILKLTSEKTLSLSNALYVPSLRSNLVSGSLLNRTGLKIVLEGDKVRLTKNEEFIGKGYLSNGLFVLNIVSMNLNAFNLAYIVEFVDIWHGRLGHVNFA

Query:  SIRKLKDLRLIDTSESHESDKCSVYVESKFFKKPFKSVESRSTDLLELIHSDLADFKNTTSRCGKN
        SIRKLKDLRLI+TSESHE+ KC + VESKF KKPFK V+SR+ DLLELIHSDLADF+ TTSR GKN
Subjt:  SIRKLKDLRLIDTSESHESDKCSVYVESKFFKKPFKSVESRSTDLLELIHSDLADFKNTTSRCGKN

A0A5A7U214 Ty1-copia retrotransposon protein

1.3e-64

78.31

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Query:  KAILKLTSEKTLSLSNALYVPSLRSNLVSGSLLNRTGLKIVLEGDKVRLTKNEEFIGKGYLSNGLFVLNIVSMNLNAFNLAYIVEFVDIWHGRLGHVNFA
        K ILKLTS+KTLSLSN LYVPSLR NLVSGSLLNR GLKIVLEGDKV LTKN +F+GKGYLSNGLFVLN +SMN NA + AY++E  ++WHGRLGHVNFA
Subjt:  KAILKLTSEKTLSLSNALYVPSLRSNLVSGSLLNRTGLKIVLEGDKVRLTKNEEFIGKGYLSNGLFVLNIVSMNLNAFNLAYIVEFVDIWHGRLGHVNFA

Query:  SIRKLKDLRLIDTSESHESDKCSVYVESKFFKKPFKSVESRSTDLLELIHSDLADFKNTTSRCGKN
        SIRKLKDLRLI+TSE+HE+ KCSV +ESKF KKPFK VE R+T+LLELIHSDLADF+ T SR GKN
Subjt:  SIRKLKDLRLIDTSESHESDKCSVYVESKFFKKPFKSVESRSTDLLELIHSDLADFKNTTSRCGKN

A0A5A7UCV4 Ty1-copia retrotransposon protein

4.0e-66

80.12

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Query:  KAILKLTSEKTLSLSNALYVPSLRSNLVSGSLLNRTGLKIVLEGDKVRLTKNEEFIGKGYLSNGLFVLNIVSMNLNAFNLAYIVEFVDIWHGRLGHVNFA
        K ILKLTS KTLSLSN LYVPSLR NLVSG+LLNR  LKIVLEGDKV LTKN EF+GKGYLSNGLFVLN +SMN+NA +  Y++EFV++WHGRLGHVNFA
Subjt:  KAILKLTSEKTLSLSNALYVPSLRSNLVSGSLLNRTGLKIVLEGDKVRLTKNEEFIGKGYLSNGLFVLNIVSMNLNAFNLAYIVEFVDIWHGRLGHVNFA

Query:  SIRKLKDLRLIDTSESHESDKCSVYVESKFFKKPFKSVESRSTDLLELIHSDLADFKNTTSRCGKN
        SIRKLKDLRLI+TS+SHE+ KC + VESKF KKPFK VESR+TDLLELIHSDLADFK TTSR GKN
Subjt:  SIRKLKDLRLIDTSESHESDKCSVYVESKFFKKPFKSVESRSTDLLELIHSDLADFKNTTSRCGKN

A0A5D3DBN4 Ty1-copia retrotransposon protein

4.4e-65

78.31

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Query:  KAILKLTSEKTLSLSNALYVPSLRSNLVSGSLLNRTGLKIVLEGDKVRLTKNEEFIGKGYLSNGLFVLNIVSMNLNAFNLAYIVEFVDIWHGRLGHVNFA
        K ILKLTS KT SL N LYVPSLR NLVSGSLLNR GLKIVLEGDKV LTKNE+F+GKGYLSNGLFVLNI+S+N NA + AY++E+ ++WHGRLGHVNF 
Subjt:  KAILKLTSEKTLSLSNALYVPSLRSNLVSGSLLNRTGLKIVLEGDKVRLTKNEEFIGKGYLSNGLFVLNIVSMNLNAFNLAYIVEFVDIWHGRLGHVNFA

Query:  SIRKLKDLRLIDTSESHESDKCSVYVESKFFKKPFKSVESRSTDLLELIHSDLADFKNTTSRCGKN
        SIRKLKDLRLI+TSESHE+ KC + VESKF KKPFK VESR+TDLLELIHSDLA+F+ TTSR GKN
Subjt:  SIRKLKDLRLIDTSESHESDKCSVYVESKFFKKPFKSVESRSTDLLELIHSDLADFKNTTSRCGKN

A0A5D3E1H3 Ty1-copia retrotransposon protein

4.0e-66

80.12

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Query:  KAILKLTSEKTLSLSNALYVPSLRSNLVSGSLLNRTGLKIVLEGDKVRLTKNEEFIGKGYLSNGLFVLNIVSMNLNAFNLAYIVEFVDIWHGRLGHVNFA
        K ILKLTS KTLSLSN LYVPSLR NLVSG+LLNR  LKIVLEGDKV LTKN EF+GKGYLSNGLFVLN +SMN+NA +  Y++EFV++WHGRLGHVNFA
Subjt:  KAILKLTSEKTLSLSNALYVPSLRSNLVSGSLLNRTGLKIVLEGDKVRLTKNEEFIGKGYLSNGLFVLNIVSMNLNAFNLAYIVEFVDIWHGRLGHVNFA

Query:  SIRKLKDLRLIDTSESHESDKCSVYVESKFFKKPFKSVESRSTDLLELIHSDLADFKNTTSRCGKN
        SIRKLKDLRLI+TS+SHE+ KC + VESKF KKPFK VESR+TDLLELIHSDLADFK TTSR GKN
Subjt:  SIRKLKDLRLIDTSESHESDKCSVYVESKFFKKPFKSVESRSTDLLELIHSDLADFKNTTSRCGKN

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.8e-10

30.77

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Query:  TLSLSNALYVPSLRSNLVSGSLLNRTGLKIVLEGDKVRLTKNEEFIGKGYLSNGLFVLNIVSMNLNAFNLAYIVEFVDIWHGRLGHVNFASIRKLKDLRL
        TL L +  +VP LR NL+SG  L+R G +      K RLTK    I KG     L+  N   +     N A     VD+WH R+GH++   ++ L    L
Subjt:  TLSLSNALYVPSLRSNLVSGSLLNRTGLKIVLEGDKVRLTKNEEFIGKGYLSNGLFVLNIVSMNLNAFNLAYIVEFVDIWHGRLGHVNFASIRKLKDLRL

Query:  IDTSESHESDKCSVYVESKFFKKPFKSVESRSTDLLELIHSDL
        I  ++      C   +  K  +  F++   R  ++L+L++SD+
Subjt:  IDTSESHESDKCSVYVESKFFKKPFKSVESRSTDLLELIHSDL

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAAGGCTATTTTAAAATTAACTTCTGAAAAAACTCTATCTCTTAGTAATGCTTTGTATGTCCCTTCCCTGCGTAGTAATTTGGTGTCTGGGAGTCTGTTGAATCGGAC
AGGACTTAAGATTGTACTGGAAGGTGACAAGGTTCGACTTACCAAAAACGAAGAATTTATCGGTAAGGGGTATCTGTCCAATGGTCTGTTTGTACTTAACATTGTTTCCA
TGAATTTAAATGCTTTTAATTTGGCCTACATAGTTGAATTTGTTGATATATGGCATGGTAGACTAGGACATGTGAACTTTGCGTCAATTAGGAAGCTTAAAGACTTAAGA
CTTATTGATACTTCTGAATCGCATGAATCTGATAAATGCTCTGTTTATGTAGAAAGTAAGTTCTTTAAGAAACCTTTCAAATCAGTCGAATCTAGAAGTACTGATCTATT
AGAATTAATTCACTCTGATCTGGCCGATTTTAAAAATACTACTAGTAGATGTGGTAAAAATTAG

mRNA sequence

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Protein sequence

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MKAILKLTSEKTLSLSNALYVPSLRSNLVSGSLLNRTGLKIVLEGDKVRLTKNEEFIGKGYLSNGLFVLNIVSMNLNAFNLAYIVEFVDIWHGRLGHVNFASIRKLKDLR
LIDTSESHESDKCSVYVESKFFKKPFKSVESRSTDLLELIHSDLADFKNTTSRCGKN

Cmc09g0250841 (gene) of Melon (Charmono) v1.1 genome