; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc09g0250921 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc09g0250921
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationCMiso1.1chr09:16981459..16982229
RNA-Seq ExpressionCmc09g0250921
SyntenyCmc09g0250921
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR041373 - Reverse transcriptase, RNase H-like domain
IPR041588 - Integrase zinc-binding domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050226.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]3.3e-130100Show/hide
Query:  MSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKATDALLRMDMNPELQTMTTTGIVDMETVAREVKKDVELQKTVEQLQRDPPIEGKYKW
        MSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKATDALLRMDMNPELQTMTTTGIVDMETVAREVKKDVELQKTVEQLQRDPPIEGKYKW
Subjt:  MSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKATDALLRMDMNPELQTMTTTGIVDMETVAREVKKDVELQKTVEQLQRDPPIEGKYKW

Query:  ENGILLYKGRVVLSNSSSLIPSLLHTFHDSILGGHFGFLRTYKRMSRKLYWIGMKNDIKRYVEQCETCQRSKYDATKPAGVLQPIPIPERVLEDWTMDFI
        ENGILLYKGRVVLSNSSSLIPSLLHTFHDSILGGHFGFLRTYKRMSRKLYWIGMKNDIKRYVEQCETCQRSKYDATKPAGVLQPIPIPERVLEDWTMDFI
Subjt:  ENGILLYKGRVVLSNSSSLIPSLLHTFHDSILGGHFGFLRTYKRMSRKLYWIGMKNDIKRYVEQCETCQRSKYDATKPAGVLQPIPIPERVLEDWTMDFI

Query:  EGLPKAEGVNVIMVVVDRLSKYVYFITLKHPFSAR
        EGLPKAEGVNVIMVVVDRLSKYVYFITLKHPFSAR
Subjt:  EGLPKAEGVNVIMVVVDRLSKYVYFITLKHPFSAR

KAA0054754.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]5.6e-12287.11Show/hide
Query:  MVVVLSIQKRRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKATDALLRMDMNPELQTMTTTGIVDMETVAREVKKDV
        MVVVLS+QK RHYLLGR+FTIMSDQKALKFLLEQREVQPQFQKWLT LLGYDFEILYQPGLQNKA DAL RMD  PELQTMTTTG VDMETVA+EV+KD 
Subjt:  MVVVLSIQKRRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKATDALLRMDMNPELQTMTTTGIVDMETVAREVKKDV

Query:  ELQKTVEQLQRDPPIEGKYKWENGILLYKGRVVLSNSSSLIPSLLHTFHDSILGGHFGFLRTYKRMSRKLYWIGMKNDIKRYVEQCETCQRSKYDATKPA
        +LQK VEQLQR PPIEGKYKWENG LLYKG+VVLSNSSSLIPSLLHTFHDSILGGH GFLRTYK MS +LYW+GMK DIKRYVEQCE CQ++KY ATKP 
Subjt:  ELQKTVEQLQRDPPIEGKYKWENGILLYKGRVVLSNSSSLIPSLLHTFHDSILGGHFGFLRTYKRMSRKLYWIGMKNDIKRYVEQCETCQRSKYDATKPA

Query:  GVLQPIPIPERVLEDWTMDFIEGLPKAEGVNVIMVVVDRLSKYVYFITLKHPFSAR
        GVLQ IPIPERVLEDWTMDFIEGLPKA GVNVIMVVVD+LSKY YFITLKHPFSA+
Subjt:  GVLQPIPIPERVLEDWTMDFIEGLPKAEGVNVIMVVVDRLSKYVYFITLKHPFSAR

TYJ96663.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]4.7e-11379.69Show/hide
Query:  MVVVLSIQKRRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKATDALLRMDMNPELQTMTTTGIVDMETVAREVKKDV
        M VVLS+QK RHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKA DAL RMD + EL+ ++TTGIVDME V +EV+KD 
Subjt:  MVVVLSIQKRRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKATDALLRMDMNPELQTMTTTGIVDMETVAREVKKDV

Query:  ELQKTVEQLQRDPPIEGKYKWENGILLYKGRVVLSNSSSLIPSLLHTFHDSILGGHFGFLRTYKRMSRKLYWIGMKNDIKRYVEQCETCQRSKYDATKPA
        ELQ  ++QLQ +P +EGKY   NG L+YKGRVVLS SSS+IPSLLHTFHDSILGGH GFLRTYKRMS +L+W GMK DIK+YVEQCE CQR+K +ATKPA
Subjt:  ELQKTVEQLQRDPPIEGKYKWENGILLYKGRVVLSNSSSLIPSLLHTFHDSILGGHFGFLRTYKRMSRKLYWIGMKNDIKRYVEQCETCQRSKYDATKPA

Query:  GVLQPIPIPERVLEDWTMDFIEGLPKAEGVNVIMVVVDRLSKYVYFITLKHPFSAR
        GVLQP+PIP+R+LEDWTMDFIEGLPKA G+NVIMVVVDRLSKY YF+T+KHPFSA+
Subjt:  GVLQPIPIPERVLEDWTMDFIEGLPKAEGVNVIMVVVDRLSKYVYFITLKHPFSAR

TYK21035.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]4.7e-11379.69Show/hide
Query:  MVVVLSIQKRRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKATDALLRMDMNPELQTMTTTGIVDMETVAREVKKDV
        M VVLS+QK RHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKA DAL RMD + EL+ ++TTGIVDME V +EV+KD 
Subjt:  MVVVLSIQKRRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKATDALLRMDMNPELQTMTTTGIVDMETVAREVKKDV

Query:  ELQKTVEQLQRDPPIEGKYKWENGILLYKGRVVLSNSSSLIPSLLHTFHDSILGGHFGFLRTYKRMSRKLYWIGMKNDIKRYVEQCETCQRSKYDATKPA
        ELQ  ++QLQ +P +EGKY   NG L+YKGRVVLS SSS+IPSLLHTFHDSILGGH GFLRTYKRMS +L+W GMK DIK+YVEQCE CQR+K +ATKPA
Subjt:  ELQKTVEQLQRDPPIEGKYKWENGILLYKGRVVLSNSSSLIPSLLHTFHDSILGGHFGFLRTYKRMSRKLYWIGMKNDIKRYVEQCETCQRSKYDATKPA

Query:  GVLQPIPIPERVLEDWTMDFIEGLPKAEGVNVIMVVVDRLSKYVYFITLKHPFSAR
        GVLQP+PIP+R+LEDWTMDFIEGLPKA G+NVIMVVVDRLSKY YF+T+KHPFSA+
Subjt:  GVLQPIPIPERVLEDWTMDFIEGLPKAEGVNVIMVVVDRLSKYVYFITLKHPFSAR

TYK28944.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]4.7e-11379.69Show/hide
Query:  MVVVLSIQKRRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKATDALLRMDMNPELQTMTTTGIVDMETVAREVKKDV
        M VVLS+QK RHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKA DAL RMD + EL+ ++TTGIVDME V +EV+KD 
Subjt:  MVVVLSIQKRRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKATDALLRMDMNPELQTMTTTGIVDMETVAREVKKDV

Query:  ELQKTVEQLQRDPPIEGKYKWENGILLYKGRVVLSNSSSLIPSLLHTFHDSILGGHFGFLRTYKRMSRKLYWIGMKNDIKRYVEQCETCQRSKYDATKPA
        ELQ  ++QLQ +P +EGKY   NG L+YKGRVVLS SSS+IPSLLHTFHDSILGGH GFLRTYKRMS +L+W GMK DIK+YVEQCE CQR+K +ATKPA
Subjt:  ELQKTVEQLQRDPPIEGKYKWENGILLYKGRVVLSNSSSLIPSLLHTFHDSILGGHFGFLRTYKRMSRKLYWIGMKNDIKRYVEQCETCQRSKYDATKPA

Query:  GVLQPIPIPERVLEDWTMDFIEGLPKAEGVNVIMVVVDRLSKYVYFITLKHPFSAR
        GVLQP+PIP+R+LEDWTMDFIEGLPKA G+NVIMVVVDRLSKY YF+T+KHPFSA+
Subjt:  GVLQPIPIPERVLEDWTMDFIEGLPKAEGVNVIMVVVDRLSKYVYFITLKHPFSAR

TrEMBL top hitse value%identityAlignment
A0A5A7U7R9 Transposon Tf2-1 polyprotein isoform X11.6e-130100Show/hide
Query:  MSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKATDALLRMDMNPELQTMTTTGIVDMETVAREVKKDVELQKTVEQLQRDPPIEGKYKW
        MSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKATDALLRMDMNPELQTMTTTGIVDMETVAREVKKDVELQKTVEQLQRDPPIEGKYKW
Subjt:  MSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKATDALLRMDMNPELQTMTTTGIVDMETVAREVKKDVELQKTVEQLQRDPPIEGKYKW

Query:  ENGILLYKGRVVLSNSSSLIPSLLHTFHDSILGGHFGFLRTYKRMSRKLYWIGMKNDIKRYVEQCETCQRSKYDATKPAGVLQPIPIPERVLEDWTMDFI
        ENGILLYKGRVVLSNSSSLIPSLLHTFHDSILGGHFGFLRTYKRMSRKLYWIGMKNDIKRYVEQCETCQRSKYDATKPAGVLQPIPIPERVLEDWTMDFI
Subjt:  ENGILLYKGRVVLSNSSSLIPSLLHTFHDSILGGHFGFLRTYKRMSRKLYWIGMKNDIKRYVEQCETCQRSKYDATKPAGVLQPIPIPERVLEDWTMDFI

Query:  EGLPKAEGVNVIMVVVDRLSKYVYFITLKHPFSAR
        EGLPKAEGVNVIMVVVDRLSKYVYFITLKHPFSAR
Subjt:  EGLPKAEGVNVIMVVVDRLSKYVYFITLKHPFSAR

A0A5A7UHY0 Transposon Ty3-G Gag-Pol polyprotein2.7e-12287.11Show/hide
Query:  MVVVLSIQKRRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKATDALLRMDMNPELQTMTTTGIVDMETVAREVKKDV
        MVVVLS+QK RHYLLGR+FTIMSDQKALKFLLEQREVQPQFQKWLT LLGYDFEILYQPGLQNKA DAL RMD  PELQTMTTTG VDMETVA+EV+KD 
Subjt:  MVVVLSIQKRRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKATDALLRMDMNPELQTMTTTGIVDMETVAREVKKDV

Query:  ELQKTVEQLQRDPPIEGKYKWENGILLYKGRVVLSNSSSLIPSLLHTFHDSILGGHFGFLRTYKRMSRKLYWIGMKNDIKRYVEQCETCQRSKYDATKPA
        +LQK VEQLQR PPIEGKYKWENG LLYKG+VVLSNSSSLIPSLLHTFHDSILGGH GFLRTYK MS +LYW+GMK DIKRYVEQCE CQ++KY ATKP 
Subjt:  ELQKTVEQLQRDPPIEGKYKWENGILLYKGRVVLSNSSSLIPSLLHTFHDSILGGHFGFLRTYKRMSRKLYWIGMKNDIKRYVEQCETCQRSKYDATKPA

Query:  GVLQPIPIPERVLEDWTMDFIEGLPKAEGVNVIMVVVDRLSKYVYFITLKHPFSAR
        GVLQ IPIPERVLEDWTMDFIEGLPKA GVNVIMVVVD+LSKY YFITLKHPFSA+
Subjt:  GVLQPIPIPERVLEDWTMDFIEGLPKAEGVNVIMVVVDRLSKYVYFITLKHPFSAR

A0A5D3BBH7 Ty3/gypsy retrotransposon protein2.3e-11379.69Show/hide
Query:  MVVVLSIQKRRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKATDALLRMDMNPELQTMTTTGIVDMETVAREVKKDV
        M VVLS+QK RHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKA DAL RMD + EL+ ++TTGIVDME V +EV+KD 
Subjt:  MVVVLSIQKRRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKATDALLRMDMNPELQTMTTTGIVDMETVAREVKKDV

Query:  ELQKTVEQLQRDPPIEGKYKWENGILLYKGRVVLSNSSSLIPSLLHTFHDSILGGHFGFLRTYKRMSRKLYWIGMKNDIKRYVEQCETCQRSKYDATKPA
        ELQ  ++QLQ +P +EGKY   NG L+YKGRVVLS SSS+IPSLLHTFHDSILGGH GFLRTYKRMS +L+W GMK DIK+YVEQCE CQR+K +ATKPA
Subjt:  ELQKTVEQLQRDPPIEGKYKWENGILLYKGRVVLSNSSSLIPSLLHTFHDSILGGHFGFLRTYKRMSRKLYWIGMKNDIKRYVEQCETCQRSKYDATKPA

Query:  GVLQPIPIPERVLEDWTMDFIEGLPKAEGVNVIMVVVDRLSKYVYFITLKHPFSAR
        GVLQP+PIP+R+LEDWTMDFIEGLPKA G+NVIMVVVDRLSKY YF+T+KHPFSA+
Subjt:  GVLQPIPIPERVLEDWTMDFIEGLPKAEGVNVIMVVVDRLSKYVYFITLKHPFSAR

A0A5D3DZK6 Ty3/gypsy retrotransposon protein2.3e-11379.69Show/hide
Query:  MVVVLSIQKRRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKATDALLRMDMNPELQTMTTTGIVDMETVAREVKKDV
        M VVLS+QK RHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKA DAL RMD + EL+ ++TTGIVDME V +EV+KD 
Subjt:  MVVVLSIQKRRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKATDALLRMDMNPELQTMTTTGIVDMETVAREVKKDV

Query:  ELQKTVEQLQRDPPIEGKYKWENGILLYKGRVVLSNSSSLIPSLLHTFHDSILGGHFGFLRTYKRMSRKLYWIGMKNDIKRYVEQCETCQRSKYDATKPA
        ELQ  ++QLQ +P +EGKY   NG L+YKGRVVLS SSS+IPSLLHTFHDSILGGH GFLRTYKRMS +L+W GMK DIK+YVEQCE CQR+K +ATKPA
Subjt:  ELQKTVEQLQRDPPIEGKYKWENGILLYKGRVVLSNSSSLIPSLLHTFHDSILGGHFGFLRTYKRMSRKLYWIGMKNDIKRYVEQCETCQRSKYDATKPA

Query:  GVLQPIPIPERVLEDWTMDFIEGLPKAEGVNVIMVVVDRLSKYVYFITLKHPFSAR
        GVLQP+PIP+R+LEDWTMDFIEGLPKA G+NVIMVVVDRLSKY YF+T+KHPFSA+
Subjt:  GVLQPIPIPERVLEDWTMDFIEGLPKAEGVNVIMVVVDRLSKYVYFITLKHPFSAR

A0A5D3E325 Ty3/gypsy retrotransposon protein2.3e-11379.69Show/hide
Query:  MVVVLSIQKRRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKATDALLRMDMNPELQTMTTTGIVDMETVAREVKKDV
        M VVLS+QK RHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKA DAL RMD + EL+ ++TTGIVDME V +EV+KD 
Subjt:  MVVVLSIQKRRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKATDALLRMDMNPELQTMTTTGIVDMETVAREVKKDV

Query:  ELQKTVEQLQRDPPIEGKYKWENGILLYKGRVVLSNSSSLIPSLLHTFHDSILGGHFGFLRTYKRMSRKLYWIGMKNDIKRYVEQCETCQRSKYDATKPA
        ELQ  ++QLQ +P +EGKY   NG L+YKGRVVLS SSS+IPSLLHTFHDSILGGH GFLRTYKRMS +L+W GMK DIK+YVEQCE CQR+K +ATKPA
Subjt:  ELQKTVEQLQRDPPIEGKYKWENGILLYKGRVVLSNSSSLIPSLLHTFHDSILGGHFGFLRTYKRMSRKLYWIGMKNDIKRYVEQCETCQRSKYDATKPA

Query:  GVLQPIPIPERVLEDWTMDFIEGLPKAEGVNVIMVVVDRLSKYVYFITLKHPFSAR
        GVLQP+PIP+R+LEDWTMDFIEGLPKA G+NVIMVVVDRLSKY YF+T+KHPFSA+
Subjt:  GVLQPIPIPERVLEDWTMDFIEGLPKAEGVNVIMVVVDRLSKYVYFITLKHPFSAR

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein1.1e-2229.01Show/hide
Query:  MVVVLSIQKRRHYLLG--RRFTIMSDQKAL--KFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKATDALLRM----DMNPELQTMTTTGIVDMETV
        + ++ S++  RHYL      F I++D + L  +   E      +  +W   L  ++FEI Y+PG  N   DAL R+    +  P+     +   V+  ++
Subjt:  MVVVLSIQKRRHYLLG--RRFTIMSDQKAL--KFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKATDALLRM----DMNPELQTMTTTGIVDMETV

Query:  AREVKKDVELQKTVEQL------QRDPPIEGKYKWENGILL-YKGRVVLSNSSSLIPSLLHTFHDSILGGHFGFLRTYKRMSRKLYWIGMKNDIKRYVEQ
          + K  V  + T +          D  +E   + ++G+L+  K +++L N + L  +++  +H+     H G       + R+  W G++  I+ YV+ 
Subjt:  AREVKKDVELQKTVEQL------QRDPPIEGKYKWENGILL-YKGRVVLSNSSSLIPSLLHTFHDSILGGHFGFLRTYKRMSRKLYWIGMKNDIKRYVEQ

Query:  CETCQRSKYDATKPAGVLQPIPIPERVLEDWTMDFIEGLPKAEGVNVIMVVVDRLSKYVYFI
        C TCQ +K    KP G LQPIP  ER  E  +MDFI  LP++ G N + VVVDR SK    +
Subjt:  CETCQRSKYDATKPAGVLQPIPIPERVLEDWTMDFIEGLPKAEGVNVIMVVVDRLSKYVYFI

P0CT35 Transposon Tf2-2 polyprotein1.1e-2229.01Show/hide
Query:  MVVVLSIQKRRHYLLG--RRFTIMSDQKAL--KFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKATDALLRM----DMNPELQTMTTTGIVDMETV
        + ++ S++  RHYL      F I++D + L  +   E      +  +W   L  ++FEI Y+PG  N   DAL R+    +  P+     +   V+  ++
Subjt:  MVVVLSIQKRRHYLLG--RRFTIMSDQKAL--KFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKATDALLRM----DMNPELQTMTTTGIVDMETV

Query:  AREVKKDVELQKTVEQL------QRDPPIEGKYKWENGILL-YKGRVVLSNSSSLIPSLLHTFHDSILGGHFGFLRTYKRMSRKLYWIGMKNDIKRYVEQ
          + K  V  + T +          D  +E   + ++G+L+  K +++L N + L  +++  +H+     H G       + R+  W G++  I+ YV+ 
Subjt:  AREVKKDVELQKTVEQL------QRDPPIEGKYKWENGILL-YKGRVVLSNSSSLIPSLLHTFHDSILGGHFGFLRTYKRMSRKLYWIGMKNDIKRYVEQ

Query:  CETCQRSKYDATKPAGVLQPIPIPERVLEDWTMDFIEGLPKAEGVNVIMVVVDRLSKYVYFI
        C TCQ +K    KP G LQPIP  ER  E  +MDFI  LP++ G N + VVVDR SK    +
Subjt:  CETCQRSKYDATKPAGVLQPIPIPERVLEDWTMDFIEGLPKAEGVNVIMVVVDRLSKYVYFI

P0CT36 Transposon Tf2-3 polyprotein1.1e-2229.01Show/hide
Query:  MVVVLSIQKRRHYLLG--RRFTIMSDQKAL--KFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKATDALLRM----DMNPELQTMTTTGIVDMETV
        + ++ S++  RHYL      F I++D + L  +   E      +  +W   L  ++FEI Y+PG  N   DAL R+    +  P+     +   V+  ++
Subjt:  MVVVLSIQKRRHYLLG--RRFTIMSDQKAL--KFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKATDALLRM----DMNPELQTMTTTGIVDMETV

Query:  AREVKKDVELQKTVEQL------QRDPPIEGKYKWENGILL-YKGRVVLSNSSSLIPSLLHTFHDSILGGHFGFLRTYKRMSRKLYWIGMKNDIKRYVEQ
          + K  V  + T +          D  +E   + ++G+L+  K +++L N + L  +++  +H+     H G       + R+  W G++  I+ YV+ 
Subjt:  AREVKKDVELQKTVEQL------QRDPPIEGKYKWENGILL-YKGRVVLSNSSSLIPSLLHTFHDSILGGHFGFLRTYKRMSRKLYWIGMKNDIKRYVEQ

Query:  CETCQRSKYDATKPAGVLQPIPIPERVLEDWTMDFIEGLPKAEGVNVIMVVVDRLSKYVYFI
        C TCQ +K    KP G LQPIP  ER  E  +MDFI  LP++ G N + VVVDR SK    +
Subjt:  CETCQRSKYDATKPAGVLQPIPIPERVLEDWTMDFIEGLPKAEGVNVIMVVVDRLSKYVYFI

P0CT41 Transposon Tf2-12 polyprotein1.1e-2229.01Show/hide
Query:  MVVVLSIQKRRHYLLG--RRFTIMSDQKAL--KFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKATDALLRM----DMNPELQTMTTTGIVDMETV
        + ++ S++  RHYL      F I++D + L  +   E      +  +W   L  ++FEI Y+PG  N   DAL R+    +  P+     +   V+  ++
Subjt:  MVVVLSIQKRRHYLLG--RRFTIMSDQKAL--KFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKATDALLRM----DMNPELQTMTTTGIVDMETV

Query:  AREVKKDVELQKTVEQL------QRDPPIEGKYKWENGILL-YKGRVVLSNSSSLIPSLLHTFHDSILGGHFGFLRTYKRMSRKLYWIGMKNDIKRYVEQ
          + K  V  + T +          D  +E   + ++G+L+  K +++L N + L  +++  +H+     H G       + R+  W G++  I+ YV+ 
Subjt:  AREVKKDVELQKTVEQL------QRDPPIEGKYKWENGILL-YKGRVVLSNSSSLIPSLLHTFHDSILGGHFGFLRTYKRMSRKLYWIGMKNDIKRYVEQ

Query:  CETCQRSKYDATKPAGVLQPIPIPERVLEDWTMDFIEGLPKAEGVNVIMVVVDRLSKYVYFI
        C TCQ +K    KP G LQPIP  ER  E  +MDFI  LP++ G N + VVVDR SK    +
Subjt:  CETCQRSKYDATKPAGVLQPIPIPERVLEDWTMDFIEGLPKAEGVNVIMVVVDRLSKYVYFI

Q9UR07 Transposon Tf2-11 polyprotein1.1e-2229.01Show/hide
Query:  MVVVLSIQKRRHYLLG--RRFTIMSDQKAL--KFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKATDALLRM----DMNPELQTMTTTGIVDMETV
        + ++ S++  RHYL      F I++D + L  +   E      +  +W   L  ++FEI Y+PG  N   DAL R+    +  P+     +   V+  ++
Subjt:  MVVVLSIQKRRHYLLG--RRFTIMSDQKAL--KFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKATDALLRM----DMNPELQTMTTTGIVDMETV

Query:  AREVKKDVELQKTVEQL------QRDPPIEGKYKWENGILL-YKGRVVLSNSSSLIPSLLHTFHDSILGGHFGFLRTYKRMSRKLYWIGMKNDIKRYVEQ
          + K  V  + T +          D  +E   + ++G+L+  K +++L N + L  +++  +H+     H G       + R+  W G++  I+ YV+ 
Subjt:  AREVKKDVELQKTVEQL------QRDPPIEGKYKWENGILL-YKGRVVLSNSSSLIPSLLHTFHDSILGGHFGFLRTYKRMSRKLYWIGMKNDIKRYVEQ

Query:  CETCQRSKYDATKPAGVLQPIPIPERVLEDWTMDFIEGLPKAEGVNVIMVVVDRLSKYVYFI
        C TCQ +K    KP G LQPIP  ER  E  +MDFI  LP++ G N + VVVDR SK    +
Subjt:  CETCQRSKYDATKPAGVLQPIPIPERVLEDWTMDFIEGLPKAEGVNVIMVVVDRLSKYVYFI

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGTAGTTCTTTCGATACAAAAACGGAGACATTACCTGTTGGGAAGAAGGTTCACGATTATGTCGGATCAGAAGGCTTTGAAATTCTTATTGGAACAAAGGGAGGT
TCAACCTCAGTTTCAAAAGTGGCTAACCAAACTTTTGGGTTATGACTTTGAGATATTATATCAGCCAGGACTCCAAAATAAGGCTACCGATGCACTTTTAAGAATGGACA
TGAACCCCGAGCTGCAAACTATGACCACGACAGGAATTGTAGACATGGAAACCGTGGCAAGGGAAGTAAAAAAAGATGTAGAGCTCCAGAAAACTGTGGAACAACTACAG
AGGGACCCTCCAATCGAAGGCAAGTATAAATGGGAAAATGGTATATTACTATATAAAGGCCGAGTAGTACTATCAAATTCCTCATCTCTCATCCCTAGCCTGTTGCACAC
GTTCCATGACTCCATTTTAGGAGGTCATTTCGGATTTCTAAGAACCTACAAACGGATGAGCAGGAAGTTATATTGGATAGGAATGAAGAATGACATTAAACGTTATGTAG
AGCAGTGTGAGACTTGCCAAAGAAGTAAGTATGATGCCACTAAGCCAGCTGGAGTTCTTCAGCCTATTCCCATTCCAGAAAGGGTTTTAGAAGACTGGACTATGGATTTT
ATAGAAGGGTTGCCTAAAGCTGAAGGAGTGAATGTGATCATGGTGGTTGTGGATCGACTAAGCAAATATGTTTATTTTATCACTTTGAAACACCCCTTTTCAGCAAGGTA
A
mRNA sequenceShow/hide mRNA sequence
ATGGTTGTAGTTCTTTCGATACAAAAACGGAGACATTACCTGTTGGGAAGAAGGTTCACGATTATGTCGGATCAGAAGGCTTTGAAATTCTTATTGGAACAAAGGGAGGT
TCAACCTCAGTTTCAAAAGTGGCTAACCAAACTTTTGGGTTATGACTTTGAGATATTATATCAGCCAGGACTCCAAAATAAGGCTACCGATGCACTTTTAAGAATGGACA
TGAACCCCGAGCTGCAAACTATGACCACGACAGGAATTGTAGACATGGAAACCGTGGCAAGGGAAGTAAAAAAAGATGTAGAGCTCCAGAAAACTGTGGAACAACTACAG
AGGGACCCTCCAATCGAAGGCAAGTATAAATGGGAAAATGGTATATTACTATATAAAGGCCGAGTAGTACTATCAAATTCCTCATCTCTCATCCCTAGCCTGTTGCACAC
GTTCCATGACTCCATTTTAGGAGGTCATTTCGGATTTCTAAGAACCTACAAACGGATGAGCAGGAAGTTATATTGGATAGGAATGAAGAATGACATTAAACGTTATGTAG
AGCAGTGTGAGACTTGCCAAAGAAGTAAGTATGATGCCACTAAGCCAGCTGGAGTTCTTCAGCCTATTCCCATTCCAGAAAGGGTTTTAGAAGACTGGACTATGGATTTT
ATAGAAGGGTTGCCTAAAGCTGAAGGAGTGAATGTGATCATGGTGGTTGTGGATCGACTAAGCAAATATGTTTATTTTATCACTTTGAAACACCCCTTTTCAGCAAGGTA
A
Protein sequenceShow/hide protein sequence
MVVVLSIQKRRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKATDALLRMDMNPELQTMTTTGIVDMETVAREVKKDVELQKTVEQLQ
RDPPIEGKYKWENGILLYKGRVVLSNSSSLIPSLLHTFHDSILGGHFGFLRTYKRMSRKLYWIGMKNDIKRYVEQCETCQRSKYDATKPAGVLQPIPIPERVLEDWTMDF
IEGLPKAEGVNVIMVVVDRLSKYVYFITLKHPFSAR