CuGenDBv2

Gene ID	Cmc09g0251621
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Transposon Ty3-G Gag-Pol polyprotein
Genome location	CMiso1.1chr09:17668428..17669057
RNA-Seq Expression	Cmc09g0251621
Synteny	Cmc09g0251621
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0010158 - abaxial cell fate specification (biological process) GO:0015074 - DNA integration (biological process) GO:0032259 - methylation (biological process) GO:0005634 - nucleus (cellular component) GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function) GO:0003755 - peptidyl-prolyl cis-trans isomerase activity (molecular function) GO:0008168 - methyltransferase activity (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036024.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]

1.3e-71

88.39

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Query:  MKNGIKKYVEQCDICQRNKFEATKHAGVLQLLPILKKILEDWTMDFTEGLPLAGGLNVIMVVVDRLSKYAYFITLRHPFSAKQVAKVFIDRVIGKHGIPK
        MKN IKKYVEQ DICQRNKFEATK  GVLQ LPI KKILEDWTMDF EGLPLAGG+NVIMVVVDRLSKYAYFITL+HPFSAKQVAKVFIDRVIGKHGIPK
Subjt:  MKNGIKKYVEQCDICQRNKFEATKHAGVLQLLPILKKILEDWTMDFTEGLPLAGGLNVIMVVVDRLSKYAYFITLRHPFSAKQVAKVFIDRVIGKHGIPK

Query:  SMVSDRDKIFLSNFWRELFAMMGTILKRSAAFHPQTDGQSKRVNRCLETYLRCFC
        S+VSDRDKIFL  F +ELFA M TILKRS AFHPQTDGQS+RVNRCLETYLRCFC
Subjt:  SMVSDRDKIFLSNFWRELFAMMGTILKRSAAFHPQTDGQSKRVNRCLETYLRCFC

KAA0051377.1 T32E20.30 [Cucumis melo var. makuwa]

1.3e-73

89.68

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Query:  MKNGIKKYVEQCDICQRNKFEATKHAGVLQLLPILKKILEDWTMDFTEGLPLAGGLNVIMVVVDRLSKYAYFITLRHPFSAKQVAKVFIDRVIGKHGIPK
        MKN IKKYVEQCDICQRNKFEATK A VLQ LPI +KILEDWTM+F EGLPLAGG+NVIMVVVDRLSKYAYFITLRH FSAKQ AKVF DRVIGKHGIPK
Subjt:  MKNGIKKYVEQCDICQRNKFEATKHAGVLQLLPILKKILEDWTMDFTEGLPLAGGLNVIMVVVDRLSKYAYFITLRHPFSAKQVAKVFIDRVIGKHGIPK

Query:  SMVSDRDKIFLSNFWRELFAMMGTILKRSAAFHPQTDGQSKRVNRCLETYLRCFC
        S+VSDRDKIFLSNFWRELFAMMGTILKRS AFHPQTDG+S+RVNRCLETYLRCFC
Subjt:  SMVSDRDKIFLSNFWRELFAMMGTILKRSAAFHPQTDGQSKRVNRCLETYLRCFC

KAA0057347.1 Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa]

1.6e-71

87.1

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Query:  MKNGIKKYVEQCDICQRNKFEATKHAGVLQLLPILKKILEDWTMDFTEGLPLAGGLNVIMVVVDRLSKYAYFITLRHPFSAKQVAKVFIDRVIGKHGIPK
        MKN IKKYVEQCDICQRNKFEATK AGVLQ LPI +KILEDWTMDF EGLPLA G+NVIMVVVDRLSKY YFITL+H FSAKQVAKVFIDRVIGKHGIPK
Subjt:  MKNGIKKYVEQCDICQRNKFEATKHAGVLQLLPILKKILEDWTMDFTEGLPLAGGLNVIMVVVDRLSKYAYFITLRHPFSAKQVAKVFIDRVIGKHGIPK

Query:  SMVSDRDKIFLSNFWRELFAMMGTILKRSAAFHPQTDGQSKRVNRCLETYLRCFC
        S+VSDRDK+FLSNFW+ELFA MGTILKRS AFHPQTD Q +RVNRCLETYLR FC
Subjt:  SMVSDRDKIFLSNFWRELFAMMGTILKRSAAFHPQTDGQSKRVNRCLETYLRCFC

KAA0067576.1 disease resistance protein [Cucumis melo var. makuwa]

7.9e-82

100

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Query:  MKNGIKKYVEQCDICQRNKFEATKHAGVLQLLPILKKILEDWTMDFTEGLPLAGGLNVIMVVVDRLSKYAYFITLRHPFSAKQVAKVFIDRVIGKHGIPK
        MKNGIKKYVEQCDICQRNKFEATKHAGVLQLLPILKKILEDWTMDFTEGLPLAGGLNVIMVVVDRLSKYAYFITLRHPFSAKQVAKVFIDRVIGKHGIPK
Subjt:  MKNGIKKYVEQCDICQRNKFEATKHAGVLQLLPILKKILEDWTMDFTEGLPLAGGLNVIMVVVDRLSKYAYFITLRHPFSAKQVAKVFIDRVIGKHGIPK

Query:  SMVSDRDKIFLSNFWRELFAMMGTILKRSAAFHPQTDGQSKRVNRCLETYLR
        SMVSDRDKIFLSNFWRELFAMMGTILKRSAAFHPQTDGQSKRVNRCLETYLR
Subjt:  SMVSDRDKIFLSNFWRELFAMMGTILKRSAAFHPQTDGQSKRVNRCLETYLR

TYK23846.1 T32E20.30 [Cucumis melo var. makuwa]

1.3e-73

89.68

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Query:  MKNGIKKYVEQCDICQRNKFEATKHAGVLQLLPILKKILEDWTMDFTEGLPLAGGLNVIMVVVDRLSKYAYFITLRHPFSAKQVAKVFIDRVIGKHGIPK
        MKN IKKYVEQCDICQRNKFEATK A VLQ LPI +KILEDWTM+F EGLPLAGG+NVIMVVVDRLSKYAYFITLRH FSAKQ AKVF DRVIGKHGIPK
Subjt:  MKNGIKKYVEQCDICQRNKFEATKHAGVLQLLPILKKILEDWTMDFTEGLPLAGGLNVIMVVVDRLSKYAYFITLRHPFSAKQVAKVFIDRVIGKHGIPK

Query:  SMVSDRDKIFLSNFWRELFAMMGTILKRSAAFHPQTDGQSKRVNRCLETYLRCFC
        S+VSDRDKIFLSNFWRELFAMMGTILKRS AFHPQTDG+S+RVNRCLETYLRCFC
Subjt:  SMVSDRDKIFLSNFWRELFAMMGTILKRSAAFHPQTDGQSKRVNRCLETYLRCFC

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SXG0 Transposon Ty3-G Gag-Pol polyprotein

6.1e-72

88.39

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Query:  MKNGIKKYVEQCDICQRNKFEATKHAGVLQLLPILKKILEDWTMDFTEGLPLAGGLNVIMVVVDRLSKYAYFITLRHPFSAKQVAKVFIDRVIGKHGIPK
        MKN IKKYVEQ DICQRNKFEATK  GVLQ LPI KKILEDWTMDF EGLPLAGG+NVIMVVVDRLSKYAYFITL+HPFSAKQVAKVFIDRVIGKHGIPK
Subjt:  MKNGIKKYVEQCDICQRNKFEATKHAGVLQLLPILKKILEDWTMDFTEGLPLAGGLNVIMVVVDRLSKYAYFITLRHPFSAKQVAKVFIDRVIGKHGIPK

Query:  SMVSDRDKIFLSNFWRELFAMMGTILKRSAAFHPQTDGQSKRVNRCLETYLRCFC
        S+VSDRDKIFL  F +ELFA M TILKRS AFHPQTDGQS+RVNRCLETYLRCFC
Subjt:  SMVSDRDKIFLSNFWRELFAMMGTILKRSAAFHPQTDGQSKRVNRCLETYLRCFC

A0A5A7UAC5 T32E20.30

6.5e-74

89.68

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Query:  MKNGIKKYVEQCDICQRNKFEATKHAGVLQLLPILKKILEDWTMDFTEGLPLAGGLNVIMVVVDRLSKYAYFITLRHPFSAKQVAKVFIDRVIGKHGIPK
        MKN IKKYVEQCDICQRNKFEATK A VLQ LPI +KILEDWTM+F EGLPLAGG+NVIMVVVDRLSKYAYFITLRH FSAKQ AKVF DRVIGKHGIPK
Subjt:  MKNGIKKYVEQCDICQRNKFEATKHAGVLQLLPILKKILEDWTMDFTEGLPLAGGLNVIMVVVDRLSKYAYFITLRHPFSAKQVAKVFIDRVIGKHGIPK

Query:  SMVSDRDKIFLSNFWRELFAMMGTILKRSAAFHPQTDGQSKRVNRCLETYLRCFC
        S+VSDRDKIFLSNFWRELFAMMGTILKRS AFHPQTDG+S+RVNRCLETYLRCFC
Subjt:  SMVSDRDKIFLSNFWRELFAMMGTILKRSAAFHPQTDGQSKRVNRCLETYLRCFC

A0A5A7VM42 Disease resistance protein

3.8e-82

100

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Query:  MKNGIKKYVEQCDICQRNKFEATKHAGVLQLLPILKKILEDWTMDFTEGLPLAGGLNVIMVVVDRLSKYAYFITLRHPFSAKQVAKVFIDRVIGKHGIPK
        MKNGIKKYVEQCDICQRNKFEATKHAGVLQLLPILKKILEDWTMDFTEGLPLAGGLNVIMVVVDRLSKYAYFITLRHPFSAKQVAKVFIDRVIGKHGIPK
Subjt:  MKNGIKKYVEQCDICQRNKFEATKHAGVLQLLPILKKILEDWTMDFTEGLPLAGGLNVIMVVVDRLSKYAYFITLRHPFSAKQVAKVFIDRVIGKHGIPK

Query:  SMVSDRDKIFLSNFWRELFAMMGTILKRSAAFHPQTDGQSKRVNRCLETYLR
        SMVSDRDKIFLSNFWRELFAMMGTILKRSAAFHPQTDGQSKRVNRCLETYLR
Subjt:  SMVSDRDKIFLSNFWRELFAMMGTILKRSAAFHPQTDGQSKRVNRCLETYLR

A0A5D3CGD7 Transposon Tf2-9 polyprotein

8.0e-72

87.1

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Query:  MKNGIKKYVEQCDICQRNKFEATKHAGVLQLLPILKKILEDWTMDFTEGLPLAGGLNVIMVVVDRLSKYAYFITLRHPFSAKQVAKVFIDRVIGKHGIPK
        MKN IKKYVEQCDICQRNKFEATK AGVLQ LPI +KILEDWTMDF EGLPLA G+NVIMVVVDRLSKY YFITL+H FSAKQVAKVFIDRVIGKHGIPK
Subjt:  MKNGIKKYVEQCDICQRNKFEATKHAGVLQLLPILKKILEDWTMDFTEGLPLAGGLNVIMVVVDRLSKYAYFITLRHPFSAKQVAKVFIDRVIGKHGIPK

Query:  SMVSDRDKIFLSNFWRELFAMMGTILKRSAAFHPQTDGQSKRVNRCLETYLRCFC
        S+VSDRDK+FLSNFW+ELFA MGTILKRS AFHPQTD Q +RVNRCLETYLR FC
Subjt:  SMVSDRDKIFLSNFWRELFAMMGTILKRSAAFHPQTDGQSKRVNRCLETYLRCFC

A0A5D3DJK4 T32E20.30

6.5e-74

89.68

Show/hide

Query:  MKNGIKKYVEQCDICQRNKFEATKHAGVLQLLPILKKILEDWTMDFTEGLPLAGGLNVIMVVVDRLSKYAYFITLRHPFSAKQVAKVFIDRVIGKHGIPK
        MKN IKKYVEQCDICQRNKFEATK A VLQ LPI +KILEDWTM+F EGLPLAGG+NVIMVVVDRLSKYAYFITLRH FSAKQ AKVF DRVIGKHGIPK
Subjt:  MKNGIKKYVEQCDICQRNKFEATKHAGVLQLLPILKKILEDWTMDFTEGLPLAGGLNVIMVVVDRLSKYAYFITLRHPFSAKQVAKVFIDRVIGKHGIPK

Query:  SMVSDRDKIFLSNFWRELFAMMGTILKRSAAFHPQTDGQSKRVNRCLETYLRCFC
        S+VSDRDKIFLSNFWRELFAMMGTILKRS AFHPQTDG+S+RVNRCLETYLRCFC
Subjt:  SMVSDRDKIFLSNFWRELFAMMGTILKRSAAFHPQTDGQSKRVNRCLETYLRCFC

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

1.2e-27

37.2

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Query:  MKNGIKKYVEQCDICQRNKFEATKHAGVLQLLPILKKILEDWTMDFTEGLPLAGGLNVIMVVVDRLSKYAYFITLRHPFSAKQVAKVFIDRVIGKHGIPK
        ++  I++YV+ C  CQ NK    K  G LQ +P  ++  E  +MDF   LP + G N + VVVDR SK A  +      +A+Q A++F  RVI   G PK
Subjt:  MKNGIKKYVEQCDICQRNKFEATKHAGVLQLLPILKKILEDWTMDFTEGLPLAGGLNVIMVVVDRLSKYAYFITLRHPFSAKQVAKVFIDRVIGKHGIPK

Query:  SMVSDRDKIFLSNFWRELFAMMGTILKRSAAFHPQTDGQSKRVNRCLETYLRCFCMSSRVVGID
         +++D D IF S  W++       ++K S  + PQTDGQ++R N+ +E  LRC C +     +D
Subjt:  SMVSDRDKIFLSNFWRELFAMMGTILKRSAAFHPQTDGQSKRVNRCLETYLRCFCMSSRVVGID

P0CT35 Transposon Tf2-2 polyprotein

1.2e-27

37.2

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Query:  MKNGIKKYVEQCDICQRNKFEATKHAGVLQLLPILKKILEDWTMDFTEGLPLAGGLNVIMVVVDRLSKYAYFITLRHPFSAKQVAKVFIDRVIGKHGIPK
        ++  I++YV+ C  CQ NK    K  G LQ +P  ++  E  +MDF   LP + G N + VVVDR SK A  +      +A+Q A++F  RVI   G PK
Subjt:  MKNGIKKYVEQCDICQRNKFEATKHAGVLQLLPILKKILEDWTMDFTEGLPLAGGLNVIMVVVDRLSKYAYFITLRHPFSAKQVAKVFIDRVIGKHGIPK

Query:  SMVSDRDKIFLSNFWRELFAMMGTILKRSAAFHPQTDGQSKRVNRCLETYLRCFCMSSRVVGID
         +++D D IF S  W++       ++K S  + PQTDGQ++R N+ +E  LRC C +     +D
Subjt:  SMVSDRDKIFLSNFWRELFAMMGTILKRSAAFHPQTDGQSKRVNRCLETYLRCFCMSSRVVGID

P0CT36 Transposon Tf2-3 polyprotein

1.2e-27

37.2

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Query:  MKNGIKKYVEQCDICQRNKFEATKHAGVLQLLPILKKILEDWTMDFTEGLPLAGGLNVIMVVVDRLSKYAYFITLRHPFSAKQVAKVFIDRVIGKHGIPK
        ++  I++YV+ C  CQ NK    K  G LQ +P  ++  E  +MDF   LP + G N + VVVDR SK A  +      +A+Q A++F  RVI   G PK
Subjt:  MKNGIKKYVEQCDICQRNKFEATKHAGVLQLLPILKKILEDWTMDFTEGLPLAGGLNVIMVVVDRLSKYAYFITLRHPFSAKQVAKVFIDRVIGKHGIPK

Query:  SMVSDRDKIFLSNFWRELFAMMGTILKRSAAFHPQTDGQSKRVNRCLETYLRCFCMSSRVVGID
         +++D D IF S  W++       ++K S  + PQTDGQ++R N+ +E  LRC C +     +D
Subjt:  SMVSDRDKIFLSNFWRELFAMMGTILKRSAAFHPQTDGQSKRVNRCLETYLRCFCMSSRVVGID

P0CT41 Transposon Tf2-12 polyprotein

1.2e-27

37.2

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Query:  MKNGIKKYVEQCDICQRNKFEATKHAGVLQLLPILKKILEDWTMDFTEGLPLAGGLNVIMVVVDRLSKYAYFITLRHPFSAKQVAKVFIDRVIGKHGIPK
        ++  I++YV+ C  CQ NK    K  G LQ +P  ++  E  +MDF   LP + G N + VVVDR SK A  +      +A+Q A++F  RVI   G PK
Subjt:  MKNGIKKYVEQCDICQRNKFEATKHAGVLQLLPILKKILEDWTMDFTEGLPLAGGLNVIMVVVDRLSKYAYFITLRHPFSAKQVAKVFIDRVIGKHGIPK

Query:  SMVSDRDKIFLSNFWRELFAMMGTILKRSAAFHPQTDGQSKRVNRCLETYLRCFCMSSRVVGID
         +++D D IF S  W++       ++K S  + PQTDGQ++R N+ +E  LRC C +     +D
Subjt:  SMVSDRDKIFLSNFWRELFAMMGTILKRSAAFHPQTDGQSKRVNRCLETYLRCFCMSSRVVGID

Q9UR07 Transposon Tf2-11 polyprotein

1.2e-27

37.2

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Query:  MKNGIKKYVEQCDICQRNKFEATKHAGVLQLLPILKKILEDWTMDFTEGLPLAGGLNVIMVVVDRLSKYAYFITLRHPFSAKQVAKVFIDRVIGKHGIPK
        ++  I++YV+ C  CQ NK    K  G LQ +P  ++  E  +MDF   LP + G N + VVVDR SK A  +      +A+Q A++F  RVI   G PK
Subjt:  MKNGIKKYVEQCDICQRNKFEATKHAGVLQLLPILKKILEDWTMDFTEGLPLAGGLNVIMVVVDRLSKYAYFITLRHPFSAKQVAKVFIDRVIGKHGIPK

Query:  SMVSDRDKIFLSNFWRELFAMMGTILKRSAAFHPQTDGQSKRVNRCLETYLRCFCMSSRVVGID
         +++D D IF S  W++       ++K S  + PQTDGQ++R N+ +E  LRC C +     +D
Subjt:  SMVSDRDKIFLSNFWRELFAMMGTILKRSAAFHPQTDGQSKRVNRCLETYLRCFCMSSRVVGID

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAAAAACGGCATCAAAAAATATGTTGAGCAATGTGATATTTGTCAAAGGAATAAGTTTGAAGCTACGAAGCATGCTGGAGTATTGCAACTTTTGCCAATTTTG
AAGAAAATACTAGAGGATTGGACCATGGATTTCACTGAAGGACTACCCTTGGCAGGTGGGTTAAATGTCATCATGGTGGTGGTTGATCGGTTAAGTAAATATGCC
TATTTCATAACTCTTAGACACCCATTTTCAGCTAAACAGGTTGCTAAAGTGTTCATTGATAGGGTGATTGGAAAACATGGAATCCCCAAGTCCATGGTGTCGGAT
CGTGACAAGATTTTCCTAAGCAACTTTTGGAGGGAACTATTTGCTATGATGGGAACCATATTGAAGAGGAGCGCGGCTTTCCATCCCCAAACTGATGGACAATCC
AAGAGGGTGAACAGATGCTTGGAGACATATCTAAGGTGTTTTTGCATGAGCAGCCGAGTAGTTGGGATAGATTCATACCTTGGGCAGAATTGTGGTATAATACCA
CTTTTCATGCTTCGGCAAAGGCAACCCCTTTCCAAATGGTTTATGGTAGACCACCCCCTCCTCTACTATCCTATGGGCACCAGCAAACTCCCAATAATGAGTTAG

mRNA sequence

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Protein sequence

Show/hide protein sequence

MKNGIKKYVEQCDICQRNKFEATKHAGVLQLLPILKKILEDWTMDFTEGLPLAGGLNVIMVVVDRLSKYAYFITLRHPFSAKQVAKVFIDRVIGKHGIPKSMVSD
RDKIFLSNFWRELFAMMGTILKRSAAFHPQTDGQSKRVNRCLETYLRCFCMSSRVVGIDSYLGQNCGIIPLFMLRQRQPLSKWFMVDHPLLYYPMGTSKLPIMS

Cmc09g0251621 (gene) of Melon (Charmono) v1.1 genome