CuGenDBv2

Gene ID	Cmc09g0251741
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr09:17789738..17790490
RNA-Seq Expression	Cmc09g0251741
Synteny	Cmc09g0251741
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0057282.1 reverse transcriptase [Cucumis melo var. makuwa]

2.4e-133

97.13

Show/hide

Query:  MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERF
        MDFITHLPKVGDFEAILVIID FSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWT+LFSFL TSLNISSSYHPQT+GQTERF
Subjt:  MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERF

Query:  NCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKK
        NCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSS GRSPFEIVSGRQPVLPHLVDHPF GKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKK
Subjt:  NCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKK

Query:  RRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKK
        RRPLEFRAGDQVLIKLRPEQVRFRGRKDQRL+RKYEGPVQVLKK
Subjt:  RRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKK

KAA0061354.1 reverse transcriptase [Cucumis melo var. makuwa]

2.0e-132

96.31

Show/hide

Query:  MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERF
        MDFITHLPKVGDFEAILVIID FSKYATFIPTTKQCSAEMTAQLFFKH VKLWGV TSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQT+GQT+RF
Subjt:  MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERF

Query:  NCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKK
        NCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSS GRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKK
Subjt:  NCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKK

Query:  RRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKK
        RRPLEF+AGDQVLIKLRPEQVRFRGRKDQRL+RKYEGPV+VLKK
Subjt:  RRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKK

KAA0067594.1 reverse transcriptase [Cucumis melo var. makuwa]

1.6e-137

100

Show/hide

Query:  MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERF
        MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERF
Subjt:  MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERF

Query:  NCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKK
        NCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKK
Subjt:  NCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKK

Query:  RRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKK
        RRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKK
Subjt:  RRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKK

TYJ97166.1 reverse transcriptase [Cucumis melo var. makuwa]

1.6e-137

100

Show/hide

Query:  MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERF
        MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERF
Subjt:  MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERF

Query:  NCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKK
        NCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKK
Subjt:  NCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKK

Query:  RRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKK
        RRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKK
Subjt:  RRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKK

TYK01597.1 reverse transcriptase [Cucumis melo var. makuwa]

7.3e-135

97.95

Show/hide

Query:  MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERF
        MDFITHLPKVGDFEAILVIID FSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQT+GQTERF
Subjt:  MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERF

Query:  NCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKK
        NCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSS GRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKK
Subjt:  NCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKK

Query:  RRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKK
        RRPLEFRAGDQVLIKLRP+QVRFRGRKDQRL+RKYEGPVQVLKK
Subjt:  RRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UN48 Reverse transcriptase

1.1e-133

97.13

Show/hide

Query:  MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERF
        MDFITHLPKVGDFEAILVIID FSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWT+LFSFL TSLNISSSYHPQT+GQTERF
Subjt:  MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERF

Query:  NCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKK
        NCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSS GRSPFEIVSGRQPVLPHLVDHPF GKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKK
Subjt:  NCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKK

Query:  RRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKK
        RRPLEFRAGDQVLIKLRPEQVRFRGRKDQRL+RKYEGPVQVLKK
Subjt:  RRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKK

A0A5A7VJQ9 Reverse transcriptase

7.6e-138

100

Show/hide

Query:  MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERF
        MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERF
Subjt:  MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERF

Query:  NCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKK
        NCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKK
Subjt:  NCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKK

Query:  RRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKK
        RRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKK
Subjt:  RRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKK

A0A5D3BDU8 Reverse transcriptase

7.6e-138

100

Show/hide

Query:  MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERF
        MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERF
Subjt:  MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERF

Query:  NCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKK
        NCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKK
Subjt:  NCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKK

Query:  RRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKK
        RRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKK
Subjt:  RRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKK

A0A5D3BQE4 Reverse transcriptase

3.5e-135

97.95

Show/hide

Query:  MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERF
        MDFITHLPKVGDFEAILVIID FSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQT+GQTERF
Subjt:  MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERF

Query:  NCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKK
        NCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSS GRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKK
Subjt:  NCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKK

Query:  RRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKK
        RRPLEFRAGDQVLIKLRP+QVRFRGRKDQRL+RKYEGPVQVLKK
Subjt:  RRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKK

A0A5D3CS04 Reverse transcriptase

9.7e-133

96.31

Show/hide

Query:  MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERF
        MDFITHLPKVGDFEAILVIID FSKYATFIPTTKQCSAEMTAQLFFKH VKLWGV TSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQT+GQT+RF
Subjt:  MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERF

Query:  NCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKK
        NCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSS GRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKK
Subjt:  NCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKK

Query:  RRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKK
        RRPLEF+AGDQVLIKLRPEQVRFRGRKDQRL+RKYEGPV+VLKK
Subjt:  RRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKK

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

2.1e-28

32.65

Show/hide

Query:  MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERF
        MDFIT LP+   + A+ V++D FSK A  +P TK  +AE TA++F + V+  +G P  I++D D  F    W +        +  S  Y PQT+GQTER 
Subjt:  MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERF

Query:  NCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKK
        N  +E+ LR   +     WV  + + Q  +N    S+   +PFEIV    P L  L    F+ K  +    ++E  Q     + +L   + +MKK+ D K
Subjt:  NCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKK

Query:  RRPL-EFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKK
         + + EF+ GD V++K           K  +L   + GP  VL+K
Subjt:  RRPL-EFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKK

P0CT35 Transposon Tf2-2 polyprotein

2.1e-28

32.65

Show/hide

Query:  MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERF
        MDFIT LP+   + A+ V++D FSK A  +P TK  +AE TA++F + V+  +G P  I++D D  F    W +        +  S  Y PQT+GQTER 
Subjt:  MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERF

Query:  NCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKK
        N  +E+ LR   +     WV  + + Q  +N    S+   +PFEIV    P L  L    F+ K  +    ++E  Q     + +L   + +MKK+ D K
Subjt:  NCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKK

Query:  RRPL-EFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKK
         + + EF+ GD V++K           K  +L   + GP  VL+K
Subjt:  RRPL-EFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKK

P0CT36 Transposon Tf2-3 polyprotein

2.1e-28

32.65

Show/hide

Query:  MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERF
        MDFIT LP+   + A+ V++D FSK A  +P TK  +AE TA++F + V+  +G P  I++D D  F    W +        +  S  Y PQT+GQTER 
Subjt:  MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERF

Query:  NCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKK
        N  +E+ LR   +     WV  + + Q  +N    S+   +PFEIV    P L  L    F+ K  +    ++E  Q     + +L   + +MKK+ D K
Subjt:  NCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKK

Query:  RRPL-EFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKK
         + + EF+ GD V++K           K  +L   + GP  VL+K
Subjt:  RRPL-EFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKK

P0CT41 Transposon Tf2-12 polyprotein

2.1e-28

32.65

Show/hide

Query:  MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERF
        MDFIT LP+   + A+ V++D FSK A  +P TK  +AE TA++F + V+  +G P  I++D D  F    W +        +  S  Y PQT+GQTER 
Subjt:  MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERF

Query:  NCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKK
        N  +E+ LR   +     WV  + + Q  +N    S+   +PFEIV    P L  L    F+ K  +    ++E  Q     + +L   + +MKK+ D K
Subjt:  NCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKK

Query:  RRPL-EFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKK
         + + EF+ GD V++K           K  +L   + GP  VL+K
Subjt:  RRPL-EFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKK

Q9UR07 Transposon Tf2-11 polyprotein

2.1e-28

32.65

Show/hide

Query:  MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERF
        MDFIT LP+   + A+ V++D FSK A  +P TK  +AE TA++F + V+  +G P  I++D D  F    W +        +  S  Y PQT+GQTER 
Subjt:  MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERF

Query:  NCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKK
        N  +E+ LR   +     WV  + + Q  +N    S+   +PFEIV    P L  L    F+ K  +    ++E  Q     + +L   + +MKK+ D K
Subjt:  NCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKK

Query:  RRPL-EFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKK
         + + EF+ GD V++K           K  +L   + GP  VL+K
Subjt:  RRPL-EFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKK

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGACTTCATCACCCATCTTCCTAAGGTAGGCGACTTTGAAGCCATCTTAGTCATCATTGATCATTTTTCAAAGTACGCCACCTTCATCCCCACCACCAAGCAG
TGTTCAGCAGAAATGACAGCTCAATTATTCTTTAAGCATGTTGTTAAGTTGTGGGGAGTCCCGACAAGTATAGTGAGTGACAGGGATGGTAGATTCATTGGCTCC
TTCTGGACGGAATTATTTTCCTTCTTGGGGACAAGTCTGAACATATCCTCAAGCTACCATCCCCAAACTAACGGCCAGACTGAGCGATTCAACTGCATGCTCGAG
GAATATTTGCGCCATTTTGTAAACGCAAGGCAAAAGAACTGGGTCCAGCTGTTGGACGTAGCCCAATTCTGTTTCAACGCTCAGACAAGTTCATCTATAGGGAGA
AGCCCATTTGAGATTGTTTCTGGGAGGCAACCAGTACTGCCACACCTTGTTGATCATCCCTTTGCAGGGAAGAACCCTCAAGCCCTCAATTTCACGAAGGAGTGG
AAACAGACAAACGACATCGCCCGAGCGTACTTAGAAAAAGCATCGAAGCGGATGAAGAAGTGGGCAGATAAGAAGCGACGACCTCTTGAGTTTCGAGCGGGAGAC
CAGGTACTCATCAAACTACGACCAGAGCAAGTCAGGTTTCGAGGACGCAAAGACCAACGTCTCATCAGGAAGTACGAAGGACCAGTTCAAGTGCTGAAAAAAGGT
AGGGAATACTTCTTATAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERFNCMLE
EYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGD
QVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKKGREYFL

Cmc09g0251741 (gene) of Melon (Charmono) v1.1 genome