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Cmc09g0251861 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc09g0251861
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr09:17892310..17892624
RNA-Seq ExpressionCmc09g0251861
SyntenyCmc09g0251861
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK05415.1 putative mitochondrial protein [Cucumis melo var. makuwa]7.5e-4187.5Show/hide
Query:  MQKSTYDHSVFYRRSDNGIVLLIVYVDDIVITGNDASGISYLKTFLQGQLHTKDLGQLKYFLGIEVMRSKKCIYLSQRKCVLDLLSERGKLGAKLSGTLM
        MQ STYDHSVFYRRSDNGIVLL+VYVDD VITGNDA GIS LKTFLQG  HTKD+GQLKYFLGIEVMRSKKCIYLSQRK VLDLLSE  KLGAK SGTLM
Subjt:  MQKSTYDHSVFYRRSDNGIVLLIVYVDDIVITGNDASGISYLKTFLQGQLHTKDLGQLKYFLGIEVMRSKKCIYLSQRKCVLDLLSERGKLGAKLSGTLM

Query:  MSNQ
        M NQ
Subjt:  MSNQ

XP_031744753.1 uncharacterized protein LOC101212255 isoform X1 [Cucumis sativus]2.7e-3885.58Show/hide
Query:  MQKSTYDHSVFYRRSDNGIVLLIVYVDDIVITGNDASGISYLKTFLQGQLHTKDLGQLKYFLGIEVMRSKKCIYLSQRKCVLDLLSERGKLGAKLSGTLM
        M+KST DHSVFYRRS+ GIVLL+VYVDDIVITGNDA GIS LKTFLQGQ +TKDLGQLKYFLGIEVMRSKK IYLSQRK VLDLLSE GKLGAK SGT M
Subjt:  MQKSTYDHSVFYRRSDNGIVLLIVYVDDIVITGNDASGISYLKTFLQGQLHTKDLGQLKYFLGIEVMRSKKCIYLSQRKCVLDLLSERGKLGAKLSGTLM

Query:  MSNQ
        M NQ
Subjt:  MSNQ

XP_031744754.1 uncharacterized protein LOC101212255 isoform X2 [Cucumis sativus]2.7e-3885.58Show/hide
Query:  MQKSTYDHSVFYRRSDNGIVLLIVYVDDIVITGNDASGISYLKTFLQGQLHTKDLGQLKYFLGIEVMRSKKCIYLSQRKCVLDLLSERGKLGAKLSGTLM
        M+KST DHSVFYRRS+ GIVLL+VYVDDIVITGNDA GIS LKTFLQGQ +TKDLGQLKYFLGIEVMRSKK IYLSQRK VLDLLSE GKLGAK SGT M
Subjt:  MQKSTYDHSVFYRRSDNGIVLLIVYVDDIVITGNDASGISYLKTFLQGQLHTKDLGQLKYFLGIEVMRSKKCIYLSQRKCVLDLLSERGKLGAKLSGTLM

Query:  MSNQ
        M NQ
Subjt:  MSNQ

XP_031744755.1 uncharacterized protein LOC101212255 isoform X3 [Cucumis sativus]2.7e-3885.58Show/hide
Query:  MQKSTYDHSVFYRRSDNGIVLLIVYVDDIVITGNDASGISYLKTFLQGQLHTKDLGQLKYFLGIEVMRSKKCIYLSQRKCVLDLLSERGKLGAKLSGTLM
        M+KST DHSVFYRRS+ GIVLL+VYVDDIVITGNDA GIS LKTFLQGQ +TKDLGQLKYFLGIEVMRSKK IYLSQRK VLDLLSE GKLGAK SGT M
Subjt:  MQKSTYDHSVFYRRSDNGIVLLIVYVDDIVITGNDASGISYLKTFLQGQLHTKDLGQLKYFLGIEVMRSKKCIYLSQRKCVLDLLSERGKLGAKLSGTLM

Query:  MSNQ
        M NQ
Subjt:  MSNQ

XP_031744758.1 uncharacterized protein LOC101212255 isoform X5 [Cucumis sativus]2.7e-3885.58Show/hide
Query:  MQKSTYDHSVFYRRSDNGIVLLIVYVDDIVITGNDASGISYLKTFLQGQLHTKDLGQLKYFLGIEVMRSKKCIYLSQRKCVLDLLSERGKLGAKLSGTLM
        M+KST DHSVFYRRS+ GIVLL+VYVDDIVITGNDA GIS LKTFLQGQ +TKDLGQLKYFLGIEVMRSKK IYLSQRK VLDLLSE GKLGAK SGT M
Subjt:  MQKSTYDHSVFYRRSDNGIVLLIVYVDDIVITGNDASGISYLKTFLQGQLHTKDLGQLKYFLGIEVMRSKKCIYLSQRKCVLDLLSERGKLGAKLSGTLM

Query:  MSNQ
        M NQ
Subjt:  MSNQ

TrEMBL top hitse value%identityAlignment
A0A438GE68 Retrovirus-related Pol polyprotein from transposon RE11.1e-2967.96Show/hide
Query:  MQKSTYDHSVFYRRSDNGIVLLIVYVDDIVITGNDASGISYLKTFLQGQLHTKDLGQLKYFLGIEVMRSKKCIYLSQRKCVLDLLSERGKLGAKLSGTLM
        M KS  DHSVFYR+S NGI+LLI+YVDDIVITGND +GIS LK F+  + HTKDLG+LKYFLG+EV RSK+ I+LSQRK VLDLL+E GK+ AK   T M
Subjt:  MQKSTYDHSVFYRRSDNGIVLLIVYVDDIVITGNDASGISYLKTFLQGQLHTKDLGQLKYFLGIEVMRSKKCIYLSQRKCVLDLLSERGKLGAKLSGTLM

Query:  MSN
        + N
Subjt:  MSN

A0A438IV86 Retrovirus-related Pol polyprotein from transposon RE13.2e-2966.99Show/hide
Query:  MQKSTYDHSVFYRRSDNGIVLLIVYVDDIVITGNDASGISYLKTFLQGQLHTKDLGQLKYFLGIEVMRSKKCIYLSQRKCVLDLLSERGKLGAKLSGTLM
        M KS  DHS+FY++S  GI+LL+VYVDDIVITGND +GIS LK F+  + HTKDLG+LKYFLGIEV RSKK ++LSQRKCVLDLL E GK+ AK   T M
Subjt:  MQKSTYDHSVFYRRSDNGIVLLIVYVDDIVITGNDASGISYLKTFLQGQLHTKDLGQLKYFLGIEVMRSKKCIYLSQRKCVLDLLSERGKLGAKLSGTLM

Query:  MSN
        + N
Subjt:  MSN

A0A5D3C204 Putative mitochondrial protein3.6e-4187.5Show/hide
Query:  MQKSTYDHSVFYRRSDNGIVLLIVYVDDIVITGNDASGISYLKTFLQGQLHTKDLGQLKYFLGIEVMRSKKCIYLSQRKCVLDLLSERGKLGAKLSGTLM
        MQ STYDHSVFYRRSDNGIVLL+VYVDD VITGNDA GIS LKTFLQG  HTKD+GQLKYFLGIEVMRSKKCIYLSQRK VLDLLSE  KLGAK SGTLM
Subjt:  MQKSTYDHSVFYRRSDNGIVLLIVYVDDIVITGNDASGISYLKTFLQGQLHTKDLGQLKYFLGIEVMRSKKCIYLSQRKCVLDLLSERGKLGAKLSGTLM

Query:  MSNQ
        M NQ
Subjt:  MSNQ

A0A6J1DFP5 uncharacterized protein LOC1110203911.1e-2967.96Show/hide
Query:  MQKSTYDHSVFYRRSDNGIVLLIVYVDDIVITGNDASGISYLKTFLQGQLHTKDLGQLKYFLGIEVMRSKKCIYLSQRKCVLDLLSERGKLGAKLSGTLM
        M+KS  +HSVFY++S++G++LL+VYVDDIVITGND+SGI  LK+FL  Q HTKDLG LKYFLGIEV R+KK I+LSQRK VLDLL+E GKL AK   T M
Subjt:  MQKSTYDHSVFYRRSDNGIVLLIVYVDDIVITGNDASGISYLKTFLQGQLHTKDLGQLKYFLGIEVMRSKKCIYLSQRKCVLDLLSERGKLGAKLSGTLM

Query:  MSN
        + N
Subjt:  MSN

A0A6P6VCZ7 uncharacterized protein LOC1137194888.3e-3069.9Show/hide
Query:  MQKSTYDHSVFYRRSDNGIVLLIVYVDDIVITGNDASGISYLKTFLQGQLHTKDLGQLKYFLGIEVMRSKKCIYLSQRKCVLDLLSERGKLGAKLSGTLM
        MQKS  DHS+FYR S+ GI+LL+VYVDDIVITG+D+SGIS LK+FL  Q +TKDLG LKYFLG+EV  SKK I+LSQRK VLDLLSE G LGAK   T M
Subjt:  MQKSTYDHSVFYRRSDNGIVLLIVYVDDIVITGNDASGISYLKTFLQGQLHTKDLGQLKYFLGIEVMRSKKCIYLSQRKCVLDLLSERGKLGAKLSGTLM

Query:  MSN
        + N
Subjt:  MSN

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-947.3e-0732.73Show/hide
Query:  KSTYDHSVFYRR-SDNGIVLLIVYVDDIVITGNDASGISYLKTFLQGQLHTKDLGQLKYFLGIEVMRSK--KCIYLSQRKCVLDLLSERGKLGAK-----
        K+  D  V+++R S+N  ++L++YVDD++I G D   I+ LK  L      KDLG  +  LG++++R +  + ++LSQ K +  +L       AK     
Subjt:  KSTYDHSVFYRR-SDNGIVLLIVYVDDIVITGNDASGISYLKTFLQGQLHTKDLGQLKYFLGIEVMRSK--KCIYLSQRKCVLDLLSERGKLGAK-----

Query:  LSGTLMMSNQ
        L+G L +S +
Subjt:  LSGTLMMSNQ

P92519 Uncharacterized mitochondrial protein AtMg008108.1e-0636.36Show/hide
Query:  LIVYVDDIVITGNDASGISYLKTFLQGQLHTKDLGQLKYFLGIEVMRSKKCIYLSQRKCVLDLLSERGKLGAKLSGT
        L++YVDDI++TG+  + ++ L   L      KDLG + YFLGI++      ++LSQ K    +L+  G L  K   T
Subjt:  LIVYVDDIVITGNDASGISYLKTFLQGQLHTKDLGQLKYFLGIEVMRSKKCIYLSQRKCVLDLLSERGKLGAKLSGT

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.9e-1041.76Show/hide
Query:  STYDHSVFYRRSDNGIVLLIVYVDDIVITGNDASGISYLKTFLQGQLHTKDLGQLKYFLGIEVMRSKKCIYLSQRKCVLDLLSERGKLGAK
        S  D S+F  +    IV ++VYVDDI+ITGND + +      L  +   KD  +L YFLGIE  R    ++LSQR+ +LDLL+    + AK
Subjt:  STYDHSVFYRRSDNGIVLLIVYVDDIVITGNDASGISYLKTFLQGQLHTKDLGQLKYFLGIEVMRSKKCIYLSQRKCVLDLLSERGKLGAK

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE23.2e-1039Show/hide
Query:  STYDHSVFYRRSDNGIVLLIVYVDDIVITGNDASGISYLKTFLQGQLHTKDLGQLKYFLGIEVMRSKKCIYLSQRKCVLDLLSERGKLGAKLSGTLMMSN
        S  D S+F  +    I+ ++VYVDDI+ITGND   + +    L  +   K+   L YFLGIE  R  + ++LSQR+  LDLL+    L AK   T M ++
Subjt:  STYDHSVFYRRSDNGIVLLIVYVDDIVITGNDASGISYLKTFLQGQLHTKDLGQLKYFLGIEVMRSKKCIYLSQRKCVLDLLSERGKLGAKLSGTLMMSN

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 81.7e-1442.86Show/hide
Query:  KSTYDHSVFYRRSDNGIVLLIVYVDDIVITGNDASGISYLKTFLQGQLHTKDLGQLKYFLGIEVMRSKKCIYLSQRKCVLDLLSERGKLGAKLSGTLM
        +S  DH+ F + +    + ++VYVDDI+I  N+ + +  LK+ L+     +DLG LKYFLG+E+ RS   I + QRK  LDLL E G LG K S   M
Subjt:  KSTYDHSVFYRRSDNGIVLLIVYVDDIVITGNDASGISYLKTFLQGQLHTKDLGQLKYFLGIEVMRSKKCIYLSQRKCVLDLLSERGKLGAKLSGTLM

ATMG00810.1 DNA/RNA polymerases superfamily protein5.8e-0736.36Show/hide
Query:  LIVYVDDIVITGNDASGISYLKTFLQGQLHTKDLGQLKYFLGIEVMRSKKCIYLSQRKCVLDLLSERGKLGAKLSGT
        L++YVDDI++TG+  + ++ L   L      KDLG + YFLGI++      ++LSQ K    +L+  G L  K   T
Subjt:  LIVYVDDIVITGNDASGISYLKTFLQGQLHTKDLGQLKYFLGIEVMRSKKCIYLSQRKCVLDLLSERGKLGAKLSGT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAAGAGTACATATGATCATTCTGTTTTTTATCGCCGATCTGATAATGGTATAGTTTTACTGATTGTATATGTTGATGATATTGTTATTACTGGAAATGAT
GCATCAGGTATTTCATACCTTAAAACTTTCCTTCAGGGTCAGCTTCACACGAAAGATTTGGGTCAATTGAAATATTTTTTAGGCATTGAAGTGATGAGAAGTAAG
AAATGTATCTATTTGTCTCAACGAAAATGTGTGCTTGATTTGTTGTCTGAGAGAGGAAAATTAGGAGCCAAACTAAGTGGTACTCTGATGATGTCGAATCAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAAAAGAGTACATATGATCATTCTGTTTTTTATCGCCGATCTGATAATGGTATAGTTTTACTGATTGTATATGTTGATGATATTGTTATTACTGGAAATGAT
GCATCAGGTATTTCATACCTTAAAACTTTCCTTCAGGGTCAGCTTCACACGAAAGATTTGGGTCAATTGAAATATTTTTTAGGCATTGAAGTGATGAGAAGTAAG
AAATGTATCTATTTGTCTCAACGAAAATGTGTGCTTGATTTGTTGTCTGAGAGAGGAAAATTAGGAGCCAAACTAAGTGGTACTCTGATGATGTCGAATCAGTAA
Protein sequenceShow/hide protein sequence
MQKSTYDHSVFYRRSDNGIVLLIVYVDDIVITGNDASGISYLKTFLQGQLHTKDLGQLKYFLGIEVMRSKKCIYLSQRKCVLDLLSERGKLGAKLSGTLMMSNQ