CuGenDBv2

Gene ID	Cmc09g0252441
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	CMiso1.1chr09:18509042..18509782
RNA-Seq Expression	Cmc09g0252441
Synteny	Cmc09g0252441
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0016740 - transferase activity (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR036875 - Zinc finger, CCHC-type superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0046400.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.6e-140

100

Show/hide

Query:  MGLRPEYESVRAALLHRSPLPSLDATIKEILFEERRLGINLSKHSDVVLASTYSPPGASITFCKNCKLTGHKFINCPKIECRYCHKSGHILDNCPIKPPR
        MGLRPEYESVRAALLHRSPLPSLDATIKEILFEERRLGINLSKHSDVVLASTYSPPGASITFCKNCKLTGHKFINCPKIECRYCHKSGHILDNCPIKPPR
Subjt:  MGLRPEYESVRAALLHRSPLPSLDATIKEILFEERRLGINLSKHSDVVLASTYSPPGASITFCKNCKLTGHKFINCPKIECRYCHKSGHILDNCPIKPPR

Query:  PRNYSTKAKNFTKPNNSSAAVAPDNSTTPQFQISDLQSLLNHLISSSSSALAVSPGNRWLLDSGCCNHMTSNYSFMNTPSPTKSLPPIYAADDNCMNIIH
        PRNYSTKAKNFTKPNNSSAAVAPDNSTTPQFQISDLQSLLNHLISSSSSALAVSPGNRWLLDSGCCNHMTSNYSFMNTPSPTKSLPPIYAADDNCMNIIH
Subjt:  PRNYSTKAKNFTKPNNSSAAVAPDNSTTPQFQISDLQSLLNHLISSSSSALAVSPGNRWLLDSGCCNHMTSNYSFMNTPSPTKSLPPIYAADDNCMNIIH

Query:  MGTINTPSLNLPHTYCVPNLTFNLVSVGQLCDLGLIVSFSSNGCQ
        MGTINTPSLNLPHTYCVPNLTFNLVSVGQLCDLGLIVSFSSNGCQ
Subjt:  MGTINTPSLNLPHTYCVPNLTFNLVSVGQLCDLGLIVSFSSNGCQ

KAA0054248.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

9.7e-132

94.33

Show/hide

Query:  MGLRPEYESVRAALLHRSPLPSLDATIKEILFEERRLGINLSKHSDVVLASTYSPPGASITFCKNCKLTGHKFINCPKIECRYCHKSGHILDNCPIKPPR
        MGLRPEYESV+AALLHRSPLPSLDA I+EILFEERRLGINLSKHSDVVLASTYSPPGAS TFCKNCKLTGHKFINCPKIECRYCHKSGHILDNCPIKPP+
Subjt:  MGLRPEYESVRAALLHRSPLPSLDATIKEILFEERRLGINLSKHSDVVLASTYSPPGASITFCKNCKLTGHKFINCPKIECRYCHKSGHILDNCPIKPPR

Query:  PRNYSTKAKNFTKPNNSSAA-VAPDNSTTPQFQISDLQSLLNHLISSSSSALAVSPGNRWLLDSGCCNHMTSNYSFMNTPSPTKSLPPIYAADDNCMNII
        PRNYST+AKNFTKPNNSSAA VAPDNSTTPQFQISDLQSLLN LISS  SALAVSPGNRWLLDSGCCNHMTSNYS MNTPSPTKSLPPIYAAD NCMNI 
Subjt:  PRNYSTKAKNFTKPNNSSAA-VAPDNSTTPQFQISDLQSLLNHLISSSSSALAVSPGNRWLLDSGCCNHMTSNYSFMNTPSPTKSLPPIYAADDNCMNII

Query:  HMGTINTPSLNLPHTYCVPNLTFNLVSVGQLCDLGLIVSFSSNGCQV
        HMGTINTPSLNLPHTYCVPNLTFNLVSVGQLCDLGL VSFSSNGCQV
Subjt:  HMGTINTPSLNLPHTYCVPNLTFNLVSVGQLCDLGLIVSFSSNGCQV

TYK14661.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.6e-140

100

Show/hide

Query:  MGLRPEYESVRAALLHRSPLPSLDATIKEILFEERRLGINLSKHSDVVLASTYSPPGASITFCKNCKLTGHKFINCPKIECRYCHKSGHILDNCPIKPPR
        MGLRPEYESVRAALLHRSPLPSLDATIKEILFEERRLGINLSKHSDVVLASTYSPPGASITFCKNCKLTGHKFINCPKIECRYCHKSGHILDNCPIKPPR
Subjt:  MGLRPEYESVRAALLHRSPLPSLDATIKEILFEERRLGINLSKHSDVVLASTYSPPGASITFCKNCKLTGHKFINCPKIECRYCHKSGHILDNCPIKPPR

Query:  PRNYSTKAKNFTKPNNSSAAVAPDNSTTPQFQISDLQSLLNHLISSSSSALAVSPGNRWLLDSGCCNHMTSNYSFMNTPSPTKSLPPIYAADDNCMNIIH
        PRNYSTKAKNFTKPNNSSAAVAPDNSTTPQFQISDLQSLLNHLISSSSSALAVSPGNRWLLDSGCCNHMTSNYSFMNTPSPTKSLPPIYAADDNCMNIIH
Subjt:  PRNYSTKAKNFTKPNNSSAAVAPDNSTTPQFQISDLQSLLNHLISSSSSALAVSPGNRWLLDSGCCNHMTSNYSFMNTPSPTKSLPPIYAADDNCMNIIH

Query:  MGTINTPSLNLPHTYCVPNLTFNLVSVGQLCDLGLIVSFSSNGCQ
        MGTINTPSLNLPHTYCVPNLTFNLVSVGQLCDLGLIVSFSSNGCQ
Subjt:  MGTINTPSLNLPHTYCVPNLTFNLVSVGQLCDLGLIVSFSSNGCQ

TYK15021.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

3.4e-132

94.74

Show/hide

Query:  MGLRPEYESVRAALLHRSPLPSLDATIKEILFEERRLGINLSKHSDVVLASTYSPPGASITFCKNCKLTGHKFINCPKIECRYCHKSGHILDNCPIKPPR
        MGLRPEYESVRAALLHRSPLPSLDA I+EILFEERRLGINLSKHSDVVLASTYSPPGAS TFCKNCKLTGHKFINCPKIECRYCHKSGHILDNCPIKPP+
Subjt:  MGLRPEYESVRAALLHRSPLPSLDATIKEILFEERRLGINLSKHSDVVLASTYSPPGASITFCKNCKLTGHKFINCPKIECRYCHKSGHILDNCPIKPPR

Query:  PRNYSTKAKNFTKPNNSSAA-VAPDNSTTPQFQISDLQSLLNHLISSSSSALAVSPGNRWLLDSGCCNHMTSNYSFMNTPSPTKSLPPIYAADDNCMNII
        PRNYST+AKNFTKPNNSSAA VAPDNSTTPQFQISDLQSLLN LISS SSALAVSPGNRWLLDSGCCNHMTS+YS MNTPSPTKSLPPIYAAD NCMNI 
Subjt:  PRNYSTKAKNFTKPNNSSAA-VAPDNSTTPQFQISDLQSLLNHLISSSSSALAVSPGNRWLLDSGCCNHMTSNYSFMNTPSPTKSLPPIYAADDNCMNII

Query:  HMGTINTPSLNLPHTYCVPNLTFNLVSVGQLCDLGLIVSFSSNGCQV
        HMGTINTPSLNLPHTYCVPNLTFNLVSVGQLCDLGL VSFSSNGCQV
Subjt:  HMGTINTPSLNLPHTYCVPNLTFNLVSVGQLCDLGLIVSFSSNGCQV

TYK21532.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.0e-129

93.52

Show/hide

Query:  MGLRPEYESVRAALLHRSPLPSLDATIKEILFEERRLGINLSKHSDVVLASTYSPPGASITFCKNCKLTGHKFINCPKIECRYCHKSGHILDNCPIKPPR
        MGL PEYESVRAALLHRSPLPSL A I+EILFEERRLGINLSKHSD VLASTYSPPGAS TFCKNCKLTGHKFINCPKIECRYCHKSGHILDNCPIKPPR
Subjt:  MGLRPEYESVRAALLHRSPLPSLDATIKEILFEERRLGINLSKHSDVVLASTYSPPGASITFCKNCKLTGHKFINCPKIECRYCHKSGHILDNCPIKPPR

Query:  PRNYSTKAKNFTKPNNSSAA-VAPDNSTTPQFQISDLQSLLNHLISSSSSALAVSPGNRWLLDSGCCNHMTSNYSFMNTPSPTKSLPPIYAADDNCMNII
        PRNYST+AKNFTKPNNSSAA VAPDNSTTPQFQISDLQSLLN LISS SSALAVSPGNRWLLDSGCCNHMTSNYS MNTPSPTKSLPPIYAAD NCMNI 
Subjt:  PRNYSTKAKNFTKPNNSSAA-VAPDNSTTPQFQISDLQSLLNHLISSSSSALAVSPGNRWLLDSGCCNHMTSNYSFMNTPSPTKSLPPIYAADDNCMNII

Query:  HMGTINTPSLNLPHTYCVPNLTFNLVSVGQLCDLGLIVSFSSNGCQV
        H GTINTPSLNLPHTYCVPNLTFNLVSVGQLCDL L VSFSSNGCQV
Subjt:  HMGTINTPSLNLPHTYCVPNLTFNLVSVGQLCDLGLIVSFSSNGCQV

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TTD2 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.2e-140

100

Show/hide

Query:  MGLRPEYESVRAALLHRSPLPSLDATIKEILFEERRLGINLSKHSDVVLASTYSPPGASITFCKNCKLTGHKFINCPKIECRYCHKSGHILDNCPIKPPR
        MGLRPEYESVRAALLHRSPLPSLDATIKEILFEERRLGINLSKHSDVVLASTYSPPGASITFCKNCKLTGHKFINCPKIECRYCHKSGHILDNCPIKPPR
Subjt:  MGLRPEYESVRAALLHRSPLPSLDATIKEILFEERRLGINLSKHSDVVLASTYSPPGASITFCKNCKLTGHKFINCPKIECRYCHKSGHILDNCPIKPPR

Query:  PRNYSTKAKNFTKPNNSSAAVAPDNSTTPQFQISDLQSLLNHLISSSSSALAVSPGNRWLLDSGCCNHMTSNYSFMNTPSPTKSLPPIYAADDNCMNIIH
        PRNYSTKAKNFTKPNNSSAAVAPDNSTTPQFQISDLQSLLNHLISSSSSALAVSPGNRWLLDSGCCNHMTSNYSFMNTPSPTKSLPPIYAADDNCMNIIH
Subjt:  PRNYSTKAKNFTKPNNSSAAVAPDNSTTPQFQISDLQSLLNHLISSSSSALAVSPGNRWLLDSGCCNHMTSNYSFMNTPSPTKSLPPIYAADDNCMNIIH

Query:  MGTINTPSLNLPHTYCVPNLTFNLVSVGQLCDLGLIVSFSSNGCQ
        MGTINTPSLNLPHTYCVPNLTFNLVSVGQLCDLGLIVSFSSNGCQ
Subjt:  MGTINTPSLNLPHTYCVPNLTFNLVSVGQLCDLGLIVSFSSNGCQ

A0A5A7UGZ4 Retrovirus-related Pol polyprotein from transposon TNT 1-94

4.7e-132

94.33

Show/hide

Query:  MGLRPEYESVRAALLHRSPLPSLDATIKEILFEERRLGINLSKHSDVVLASTYSPPGASITFCKNCKLTGHKFINCPKIECRYCHKSGHILDNCPIKPPR
        MGLRPEYESV+AALLHRSPLPSLDA I+EILFEERRLGINLSKHSDVVLASTYSPPGAS TFCKNCKLTGHKFINCPKIECRYCHKSGHILDNCPIKPP+
Subjt:  MGLRPEYESVRAALLHRSPLPSLDATIKEILFEERRLGINLSKHSDVVLASTYSPPGASITFCKNCKLTGHKFINCPKIECRYCHKSGHILDNCPIKPPR

Query:  PRNYSTKAKNFTKPNNSSAA-VAPDNSTTPQFQISDLQSLLNHLISSSSSALAVSPGNRWLLDSGCCNHMTSNYSFMNTPSPTKSLPPIYAADDNCMNII
        PRNYST+AKNFTKPNNSSAA VAPDNSTTPQFQISDLQSLLN LISS  SALAVSPGNRWLLDSGCCNHMTSNYS MNTPSPTKSLPPIYAAD NCMNI 
Subjt:  PRNYSTKAKNFTKPNNSSAA-VAPDNSTTPQFQISDLQSLLNHLISSSSSALAVSPGNRWLLDSGCCNHMTSNYSFMNTPSPTKSLPPIYAADDNCMNII

Query:  HMGTINTPSLNLPHTYCVPNLTFNLVSVGQLCDLGLIVSFSSNGCQV
        HMGTINTPSLNLPHTYCVPNLTFNLVSVGQLCDLGL VSFSSNGCQV
Subjt:  HMGTINTPSLNLPHTYCVPNLTFNLVSVGQLCDLGLIVSFSSNGCQV

A0A5D3CS71 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.2e-140

100

Show/hide

Query:  MGLRPEYESVRAALLHRSPLPSLDATIKEILFEERRLGINLSKHSDVVLASTYSPPGASITFCKNCKLTGHKFINCPKIECRYCHKSGHILDNCPIKPPR
        MGLRPEYESVRAALLHRSPLPSLDATIKEILFEERRLGINLSKHSDVVLASTYSPPGASITFCKNCKLTGHKFINCPKIECRYCHKSGHILDNCPIKPPR
Subjt:  MGLRPEYESVRAALLHRSPLPSLDATIKEILFEERRLGINLSKHSDVVLASTYSPPGASITFCKNCKLTGHKFINCPKIECRYCHKSGHILDNCPIKPPR

Query:  PRNYSTKAKNFTKPNNSSAAVAPDNSTTPQFQISDLQSLLNHLISSSSSALAVSPGNRWLLDSGCCNHMTSNYSFMNTPSPTKSLPPIYAADDNCMNIIH
        PRNYSTKAKNFTKPNNSSAAVAPDNSTTPQFQISDLQSLLNHLISSSSSALAVSPGNRWLLDSGCCNHMTSNYSFMNTPSPTKSLPPIYAADDNCMNIIH
Subjt:  PRNYSTKAKNFTKPNNSSAAVAPDNSTTPQFQISDLQSLLNHLISSSSSALAVSPGNRWLLDSGCCNHMTSNYSFMNTPSPTKSLPPIYAADDNCMNIIH

Query:  MGTINTPSLNLPHTYCVPNLTFNLVSVGQLCDLGLIVSFSSNGCQ
        MGTINTPSLNLPHTYCVPNLTFNLVSVGQLCDLGLIVSFSSNGCQ
Subjt:  MGTINTPSLNLPHTYCVPNLTFNLVSVGQLCDLGLIVSFSSNGCQ

A0A5D3CT53 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.6e-132

94.74

Show/hide

Query:  MGLRPEYESVRAALLHRSPLPSLDATIKEILFEERRLGINLSKHSDVVLASTYSPPGASITFCKNCKLTGHKFINCPKIECRYCHKSGHILDNCPIKPPR
        MGLRPEYESVRAALLHRSPLPSLDA I+EILFEERRLGINLSKHSDVVLASTYSPPGAS TFCKNCKLTGHKFINCPKIECRYCHKSGHILDNCPIKPP+
Subjt:  MGLRPEYESVRAALLHRSPLPSLDATIKEILFEERRLGINLSKHSDVVLASTYSPPGASITFCKNCKLTGHKFINCPKIECRYCHKSGHILDNCPIKPPR

Query:  PRNYSTKAKNFTKPNNSSAA-VAPDNSTTPQFQISDLQSLLNHLISSSSSALAVSPGNRWLLDSGCCNHMTSNYSFMNTPSPTKSLPPIYAADDNCMNII
        PRNYST+AKNFTKPNNSSAA VAPDNSTTPQFQISDLQSLLN LISS SSALAVSPGNRWLLDSGCCNHMTS+YS MNTPSPTKSLPPIYAAD NCMNI 
Subjt:  PRNYSTKAKNFTKPNNSSAA-VAPDNSTTPQFQISDLQSLLNHLISSSSSALAVSPGNRWLLDSGCCNHMTSNYSFMNTPSPTKSLPPIYAADDNCMNII

Query:  HMGTINTPSLNLPHTYCVPNLTFNLVSVGQLCDLGLIVSFSSNGCQV
        HMGTINTPSLNLPHTYCVPNLTFNLVSVGQLCDLGL VSFSSNGCQV
Subjt:  HMGTINTPSLNLPHTYCVPNLTFNLVSVGQLCDLGLIVSFSSNGCQV

A0A5D3DD70 Retrovirus-related Pol polyprotein from transposon TNT 1-94

9.8e-130

93.52

Show/hide

Query:  MGLRPEYESVRAALLHRSPLPSLDATIKEILFEERRLGINLSKHSDVVLASTYSPPGASITFCKNCKLTGHKFINCPKIECRYCHKSGHILDNCPIKPPR
        MGL PEYESVRAALLHRSPLPSL A I+EILFEERRLGINLSKHSD VLASTYSPPGAS TFCKNCKLTGHKFINCPKIECRYCHKSGHILDNCPIKPPR
Subjt:  MGLRPEYESVRAALLHRSPLPSLDATIKEILFEERRLGINLSKHSDVVLASTYSPPGASITFCKNCKLTGHKFINCPKIECRYCHKSGHILDNCPIKPPR

Query:  PRNYSTKAKNFTKPNNSSAA-VAPDNSTTPQFQISDLQSLLNHLISSSSSALAVSPGNRWLLDSGCCNHMTSNYSFMNTPSPTKSLPPIYAADDNCMNII
        PRNYST+AKNFTKPNNSSAA VAPDNSTTPQFQISDLQSLLN LISS SSALAVSPGNRWLLDSGCCNHMTSNYS MNTPSPTKSLPPIYAAD NCMNI 
Subjt:  PRNYSTKAKNFTKPNNSSAA-VAPDNSTTPQFQISDLQSLLNHLISSSSSALAVSPGNRWLLDSGCCNHMTSNYSFMNTPSPTKSLPPIYAADDNCMNII

Query:  HMGTINTPSLNLPHTYCVPNLTFNLVSVGQLCDLGLIVSFSSNGCQV
        H GTINTPSLNLPHTYCVPNLTFNLVSVGQLCDL L VSFSSNGCQV
Subjt:  HMGTINTPSLNLPHTYCVPNLTFNLVSVGQLCDLGLIVSFSSNGCQV

SwissProt top hits

e value

%identity

Alignment

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

5.0e-06

30.99

Show/hide

Query:  NFTKP-NNSSAAVAPDNSTTPQF----QISDLQ-------SLLNHLISSSSSALAVSP-----------------GNRWLLDSGCCNHMTSNYSFMNTPS
        N +KP   SS    P+N+ +  +    QI  +Q       S L H +SS +S    SP                  N WLLDSG  +H+TS+++ ++   
Subjt:  NFTKP-NNSSAAVAPDNSTTPQF----QISDLQ-------SLLNHLISSSSSALAVSP-----------------GNRWLLDSGCCNHMTSNYSFMNTPS

Query:  PTKSLPPIYAADDNCMNIIHMG--TINTPS--LNLPHTYCVPNLTFNLVSVGQLCDL-GLIVSFSSNGCQV
        P      +  AD + + I H G  +++T S  LNL +   VPN+  NL+SV +LC+  G+ V F     QV
Subjt:  PTKSLPPIYAADDNCMNIIHMG--TINTPS--LNLPHTYCVPNLTFNLVSVGQLCDL-GLIVSFSSNGCQV

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

1.7e-06

26.92

Show/hide

Query:  CRYCHKSGHILDNCPIKPPRPRNYSTKAKNFTKPNNSSAAVAPDNSTTPQFQISDLQSLLNHLISSSSSALAVSPGNRWLLDSGCCNHMTSNYSFMNTPS
        C+ C   GH    CP           +   F    N   + +P     P+          N  ++S  +A      N WLLDSG  +H+TS+++ ++   
Subjt:  CRYCHKSGHILDNCPIKPPRPRNYSTKAKNFTKPNNSSAAVAPDNSTTPQFQISDLQSLLNHLISSSSSALAVSPGNRWLLDSGCCNHMTSNYSFMNTPS

Query:  PTKSLPPIYAADDNCMNIIHMGTINTP----SLNLPHTYCVPNLTFNLVSVGQLCD
        P      +  AD + + I H G+ + P    SL+L     VPN+  NL+SV +LC+
Subjt:  PTKSLPPIYAADDNCMNIIHMGTINTP----SLNLPHTYCVPNLTFNLVSVGQLCD

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGGACTACGTCCAGAATATGAATCTGTTAGAGCTGCCTTATTACACCGCAGCCCCCTGCCCTCATTGGATGCCACTATCAAAGAAATATTATTTGAAGAAAGACGTCT
TGGCATCAATCTCTCCAAACATTCTGATGTTGTTCTTGCCAGCACTTATTCACCACCTGGAGCATCAATCACTTTTTGTAAGAATTGTAAGCTCACTGGTCATAAGTTTA
TTAATTGTCCTAAAATAGAATGCAGGTACTGCCATAAGTCAGGTCACATCCTGGATAATTGTCCCATAAAACCACCTCGACCTCGAAACTATTCTACAAAAGCAAAGAAC
TTTACTAAACCCAATAACTCCTCTGCTGCTGTTGCTCCGGATAATTCCACCACCCCCCAGTTTCAGATAAGTGATCTTCAAAGTTTACTAAATCACTTGATTTCATCATC
TTCCTCTGCACTTGCCGTCTCACCAGGTAATCGATGGCTTCTTGACTCTGGCTGTTGCAATCATATGACATCTAATTACTCTTTTATGAACACCCCTAGTCCTACTAAAT
CTTTACCTCCCATTTATGCTGCTGACGACAATTGTATGAATATCATTCACATGGGCACCATCAATACCCCTAGTTTGAATCTTCCTCATACTTACTGTGTCCCAAACTTA
ACCTTCAATCTAGTATCTGTTGGTCAATTGTGCGACCTTGGCTTAATTGTCTCTTTTTCTTCCAATGGTTGTCAGGTTTAG

mRNA sequence

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Protein sequence

Show/hide protein sequence

MGLRPEYESVRAALLHRSPLPSLDATIKEILFEERRLGINLSKHSDVVLASTYSPPGASITFCKNCKLTGHKFINCPKIECRYCHKSGHILDNCPIKPPRPRNYSTKAKN
FTKPNNSSAAVAPDNSTTPQFQISDLQSLLNHLISSSSSALAVSPGNRWLLDSGCCNHMTSNYSFMNTPSPTKSLPPIYAADDNCMNIIHMGTINTPSLNLPHTYCVPNL
TFNLVSVGQLCDLGLIVSFSSNGCQV

Cmc09g0252441 (gene) of Melon (Charmono) v1.1 genome