CuGenDBv2

Gene ID	Cmc09g0252541
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	CMiso1.1chr09:18587733..18588272
RNA-Seq Expression	Cmc09g0252541
Synteny	Cmc09g0252541
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0018108 - peptidyl-tyrosine phosphorylation (biological process) GO:0005886 - plasma membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004674 - protein serine/threonine kinase activity (molecular function) GO:0004714 - transmembrane receptor protein tyrosine kinase activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0046392.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]

4.1e-95

100

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Query:  MRYLKKIQNLGLHYNKFSAVIEGYNDADWNSFSDDSKATGGYIFNIAGGAVAWKSKKQTILAQSTMESEMIALVAASEEASCLRSLLPEIPTWERPIPAI
        MRYLKKIQNLGLHYNKFSAVIEGYNDADWNSFSDDSKATGGYIFNIAGGAVAWKSKKQTILAQSTMESEMIALVAASEEASCLRSLLPEIPTWERPIPAI
Subjt:  MRYLKKIQNLGLHYNKFSAVIEGYNDADWNSFSDDSKATGGYIFNIAGGAVAWKSKKQTILAQSTMESEMIALVAASEEASCLRSLLPEIPTWERPIPAI

Query:  LIHCDSTAVIAKVQNCYYNGKRRQIRRKHSTIRELLTTGVVIVDYIRSDDNLADPFMKGLAREKVFKTSERIGLKPIKT
        LIHCDSTAVIAKVQNCYYNGKRRQIRRKHSTIRELLTTGVVIVDYIRSDDNLADPFMKGLAREKVFKTSERIGLKPIKT
Subjt:  LIHCDSTAVIAKVQNCYYNGKRRQIRRKHSTIRELLTTGVVIVDYIRSDDNLADPFMKGLAREKVFKTSERIGLKPIKT

KAA0058878.1 putative polyprotein [Cucumis melo var. makuwa]

3.2e-76

83.71

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Query:  MRYLKKIQNLGLHYNKFSAVIEGYNDADWNSFSDDSKATGGYIFNIAGGAVAWKSKKQTILAQSTMESEMIALVAASEEASCLRSLLPEIPTWERPIPAI
        MRYLKK QNLGLHYNKFS V+EGYND DWNS SDDSKAT GYIFNIAGG VAWKSKKQTILAQS MESEMIAL  AS+EAS L+SLL EIPTWER IPAI
Subjt:  MRYLKKIQNLGLHYNKFSAVIEGYNDADWNSFSDDSKATGGYIFNIAGGAVAWKSKKQTILAQSTMESEMIALVAASEEASCLRSLLPEIPTWERPIPAI

Query:  LIHCDSTAVIAKVQNCYYNGKRRQIRRKHSTIRELLTTGVVIVDYIRSDDNLADPFMKGLAREKVFKTSERIGLKPIK
        LIHCDST  IAKVQN YYNGKRRQIRRKHSTIRELLT G VIVDY+RSD+NLADP  K LAREKVFKTSER+GL  +K
Subjt:  LIHCDSTAVIAKVQNCYYNGKRRQIRRKHSTIRELLTTGVVIVDYIRSDDNLADPFMKGLAREKVFKTSERIGLKPIK

RZB51814.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Glycine soja]

2.0e-70

74.01

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Query:  MRYLKKIQNLGLHYNKFSAVIEGYNDADWNSFSDDSKATGGYIFNIAGGAVAWKSKKQTILAQSTMESEMIALVAASEEASCLRSLLPEIPTWERPIPAI
        MRYLK+  NLGLHY +F AV+EGY+DADWN+ S+DSKAT GYIF+IAGGA++WKSKK TILAQST+ESEMIAL  ASEEAS L+SLL EIP WERPIPA 
Subjt:  MRYLKKIQNLGLHYNKFSAVIEGYNDADWNSFSDDSKATGGYIFNIAGGAVAWKSKKQTILAQSTMESEMIALVAASEEASCLRSLLPEIPTWERPIPAI

Query:  LIHCDSTAVIAKVQNCYYNGKRRQIRRKHSTIRELLTTGVVIVDYIRSDDNLADPFMKGLAREKVFKTSERIGLKPI
        LIHCDSTA IAK++NCYYNGK+RQIRRKH+T+RELL+TG V VD++ +DDNL DP  KGLAREKV  TS+R+GL P+
Subjt:  LIHCDSTAVIAKVQNCYYNGKRRQIRRKHSTIRELLTTGVVIVDYIRSDDNLADPFMKGLAREKVFKTSERIGLKPI

RZC29738.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Glycine soja]

6.3e-72

76.27

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Query:  MRYLKKIQNLGLHYNKFSAVIEGYNDADWNSFSDDSKATGGYIFNIAGGAVAWKSKKQTILAQSTMESEMIALVAASEEASCLRSLLPEIPTWERPIPAI
        MRYLK+  NLGLHY +FSAV+EGYNDADWN+ SDDSKAT GYIF+IAGGA++WKSKKQTILAQSTMESEMIAL  ASEEAS LRSLL EIP WERPIPA+
Subjt:  MRYLKKIQNLGLHYNKFSAVIEGYNDADWNSFSDDSKATGGYIFNIAGGAVAWKSKKQTILAQSTMESEMIALVAASEEASCLRSLLPEIPTWERPIPAI

Query:  LIHCDSTAVIAKVQNCYYNGKRRQIRRKHSTIRELLTTGVVIVDYIRSDDNLADPFMKGLAREKVFKTSERIGLKPI
        LIHCDS+A I K++N YYNGK+RQIRRKH+T+RELL+ G V VD++R+DDNLADP  KGLAREKV  TS+R+GL P+
Subjt:  LIHCDSTAVIAKVQNCYYNGKRRQIRRKHSTIRELLTTGVVIVDYIRSDDNLADPFMKGLAREKVFKTSERIGLKPI

TYJ98069.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.4e-79

86.03

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Query:  MRYLKKIQNLGLHYNKFSAVIEGYNDADWNSFSDDSKATGGYIFNIAGGAVAWKSKKQTILAQSTMESEMIALVAASEEASCLRSLLPEIPTWERPIPAI
        MRYLKK QNLGLHYNKF  V+EGY+DADWNS SDDSKAT GYIFNI GGAVAWKSKKQTILAQSTMESEMIAL  ASEEAS LRSLL EIPTW+RPIPAI
Subjt:  MRYLKKIQNLGLHYNKFSAVIEGYNDADWNSFSDDSKATGGYIFNIAGGAVAWKSKKQTILAQSTMESEMIALVAASEEASCLRSLLPEIPTWERPIPAI

Query:  LIHCDSTAVIAKVQNCYYNGKRRQIRRKHSTIRELLTTGVVIVDYIRSDDNLADPFMKGLAREKVFKTSERIGLKPIKT
        LIHCDSTA IAK QN YYNGKRRQIRRKHSTIRELLTTG VIVDY+ SD+NLADP  KGLAREKVFK+SER+ LKPIKT
Subjt:  LIHCDSTAVIAKVQNCYYNGKRRQIRRKHSTIRELLTTGVVIVDYIRSDDNLADPFMKGLAREKVFKTSERIGLKPIKT

TrEMBL top hits

e value

%identity

Alignment

A0A445FSI6 Retrovirus-related Pol polyprotein from transposon TNT 1-94

9.8e-71

74.01

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Query:  MRYLKKIQNLGLHYNKFSAVIEGYNDADWNSFSDDSKATGGYIFNIAGGAVAWKSKKQTILAQSTMESEMIALVAASEEASCLRSLLPEIPTWERPIPAI
        MRYLK+  NLGLHY +F AV+EGY+DADWN+ S+DSKAT GYIF+IAGGA++WKSKK TILAQST+ESEMIAL  ASEEAS L+SLL EIP WERPIPA 
Subjt:  MRYLKKIQNLGLHYNKFSAVIEGYNDADWNSFSDDSKATGGYIFNIAGGAVAWKSKKQTILAQSTMESEMIALVAASEEASCLRSLLPEIPTWERPIPAI

Query:  LIHCDSTAVIAKVQNCYYNGKRRQIRRKHSTIRELLTTGVVIVDYIRSDDNLADPFMKGLAREKVFKTSERIGLKPI
        LIHCDSTA IAK++NCYYNGK+RQIRRKH+T+RELL+TG V VD++ +DDNL DP  KGLAREKV  TS+R+GL P+
Subjt:  LIHCDSTAVIAKVQNCYYNGKRRQIRRKHSTIRELLTTGVVIVDYIRSDDNLADPFMKGLAREKVFKTSERIGLKPI

A0A445M2H4 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.1e-72

76.27

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Query:  MRYLKKIQNLGLHYNKFSAVIEGYNDADWNSFSDDSKATGGYIFNIAGGAVAWKSKKQTILAQSTMESEMIALVAASEEASCLRSLLPEIPTWERPIPAI
        MRYLK+  NLGLHY +FSAV+EGYNDADWN+ SDDSKAT GYIF+IAGGA++WKSKKQTILAQSTMESEMIAL  ASEEAS LRSLL EIP WERPIPA+
Subjt:  MRYLKKIQNLGLHYNKFSAVIEGYNDADWNSFSDDSKATGGYIFNIAGGAVAWKSKKQTILAQSTMESEMIALVAASEEASCLRSLLPEIPTWERPIPAI

Query:  LIHCDSTAVIAKVQNCYYNGKRRQIRRKHSTIRELLTTGVVIVDYIRSDDNLADPFMKGLAREKVFKTSERIGLKPI
        LIHCDS+A I K++N YYNGK+RQIRRKH+T+RELL+ G V VD++R+DDNLADP  KGLAREKV  TS+R+GL P+
Subjt:  LIHCDSTAVIAKVQNCYYNGKRRQIRRKHSTIRELLTTGVVIVDYIRSDDNLADPFMKGLAREKVFKTSERIGLKPI

A0A5D3BGA0 Retrovirus-related Pol polyprotein from transposon TNT 1-94

6.8e-80

86.03

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Query:  MRYLKKIQNLGLHYNKFSAVIEGYNDADWNSFSDDSKATGGYIFNIAGGAVAWKSKKQTILAQSTMESEMIALVAASEEASCLRSLLPEIPTWERPIPAI
        MRYLKK QNLGLHYNKF  V+EGY+DADWNS SDDSKAT GYIFNI GGAVAWKSKKQTILAQSTMESEMIAL  ASEEAS LRSLL EIPTW+RPIPAI
Subjt:  MRYLKKIQNLGLHYNKFSAVIEGYNDADWNSFSDDSKATGGYIFNIAGGAVAWKSKKQTILAQSTMESEMIALVAASEEASCLRSLLPEIPTWERPIPAI

Query:  LIHCDSTAVIAKVQNCYYNGKRRQIRRKHSTIRELLTTGVVIVDYIRSDDNLADPFMKGLAREKVFKTSERIGLKPIKT
        LIHCDSTA IAK QN YYNGKRRQIRRKHSTIRELLTTG VIVDY+ SD+NLADP  KGLAREKVFK+SER+ LKPIKT
Subjt:  LIHCDSTAVIAKVQNCYYNGKRRQIRRKHSTIRELLTTGVVIVDYIRSDDNLADPFMKGLAREKVFKTSERIGLKPIKT

A0A5D3CTA4 Retrotransposon protein, putative, Ty1-copia subclass

2.0e-95

100

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Query:  MRYLKKIQNLGLHYNKFSAVIEGYNDADWNSFSDDSKATGGYIFNIAGGAVAWKSKKQTILAQSTMESEMIALVAASEEASCLRSLLPEIPTWERPIPAI
        MRYLKKIQNLGLHYNKFSAVIEGYNDADWNSFSDDSKATGGYIFNIAGGAVAWKSKKQTILAQSTMESEMIALVAASEEASCLRSLLPEIPTWERPIPAI
Subjt:  MRYLKKIQNLGLHYNKFSAVIEGYNDADWNSFSDDSKATGGYIFNIAGGAVAWKSKKQTILAQSTMESEMIALVAASEEASCLRSLLPEIPTWERPIPAI

Query:  LIHCDSTAVIAKVQNCYYNGKRRQIRRKHSTIRELLTTGVVIVDYIRSDDNLADPFMKGLAREKVFKTSERIGLKPIKT
        LIHCDSTAVIAKVQNCYYNGKRRQIRRKHSTIRELLTTGVVIVDYIRSDDNLADPFMKGLAREKVFKTSERIGLKPIKT
Subjt:  LIHCDSTAVIAKVQNCYYNGKRRQIRRKHSTIRELLTTGVVIVDYIRSDDNLADPFMKGLAREKVFKTSERIGLKPIKT

A0A5D3DJH9 Putative polyprotein

1.6e-76

83.71

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Query:  MRYLKKIQNLGLHYNKFSAVIEGYNDADWNSFSDDSKATGGYIFNIAGGAVAWKSKKQTILAQSTMESEMIALVAASEEASCLRSLLPEIPTWERPIPAI
        MRYLKK QNLGLHYNKFS V+EGYND DWNS SDDSKAT GYIFNIAGG VAWKSKKQTILAQS MESEMIAL  AS+EAS L+SLL EIPTWER IPAI
Subjt:  MRYLKKIQNLGLHYNKFSAVIEGYNDADWNSFSDDSKATGGYIFNIAGGAVAWKSKKQTILAQSTMESEMIALVAASEEASCLRSLLPEIPTWERPIPAI

Query:  LIHCDSTAVIAKVQNCYYNGKRRQIRRKHSTIRELLTTGVVIVDYIRSDDNLADPFMKGLAREKVFKTSERIGLKPIK
        LIHCDST  IAKVQN YYNGKRRQIRRKHSTIRELLT G VIVDY+RSD+NLADP  K LAREKVFKTSER+GL  +K
Subjt:  LIHCDSTAVIAKVQNCYYNGKRRQIRRKHSTIRELLTTGVVIVDYIRSDDNLADPFMKGLAREKVFKTSERIGLKPIK

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

6.2e-14

31.84

Show/hide

Query:  MRYLKKIQNLGLHYNK---FSAVIEGYNDADWNSFSDDSKATGGYIFNIAG-GAVAWKSKKQTILAQSTMESEMIALVAASEEASCLRSLLPEIP-TWER
        +RYLK   ++ L + K   F   I GY D+DW     D K+T GY+F +     + W +K+Q  +A S+ E+E +AL  A  EA  L+ LL  I    E 
Subjt:  MRYLKKIQNLGLHYNK---FSAVIEGYNDADWNSFSDDSKATGGYIFNIAG-GAVAWKSKKQTILAQSTMESEMIALVAASEEASCLRSLLPEIP-TWER

Query:  PIPAILIHCDSTAVIAKVQNCYYNGKRRQIRRKHSTIRELLTTGVVIVDYIRSDDNLADPFMKGLAREKVFKTSERIGL
        PI    I+ D+   I+   N   + + + I  K+   RE +   V+ ++YI +++ LAD F K L   +  +  +++GL
Subjt:  PIPAILIHCDSTAVIAKVQNCYYNGKRRQIRRKHSTIRELLTTGVVIVDYIRSDDNLADPFMKGLAREKVFKTSERIGL

P0CV72 Secreted RxLR effector protein 161

6.5e-11

41.98

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Query:  MRYLKKIQNLGLHYNKF-SAVIEGYNDADWNSFSDDSKATGGYIFNIAGGAVAWKSKKQTILAQSTMESEMIALVAASEEA
        +RYL+  Q  GL + +  +A + GY+DADW    +  ++T GY+F + GG V+W+SKKQ  +A S+ E E +AL  A++EA
Subjt:  MRYLKKIQNLGLHYNKF-SAVIEGYNDADWNSFSDDSKATGGYIFNIAGGAVAWKSKKQTILAQSTMESEMIALVAASEEA

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.8e-16

29.89

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Query:  MRYLKKIQNLGLHYNKFSAVIEGYNDADWNSFSDDSKATGGYIFNIAGGAVAWKSKKQTILAQSTMESEMIALVAASEEASCLRSLLPEIPTWERPIPAI
        +RYL+      L +     +++GY DAD     D+ K++ GY+F  +GGA++W+SK Q  +A ST E+E IA     +E   L+  L E+   ++     
Subjt:  MRYLKKIQNLGLHYNKFSAVIEGYNDADWNSFSDDSKATGGYIFNIAGGAVAWKSKKQTILAQSTMESEMIALVAASEEASCLRSLLPEIPTWERPIPAI

Query:  LIHCDSTAVIAKVQNCYYNGKRRQIRRKHSTIRELLTTGVVIVDYIRSDDNLADPFMKGLAREKVFKTSERIGL
        +++CDS + I   +N  Y+ + + I  ++  IRE++    + V  I +++N AD   K + R K     E +G+
Subjt:  LIHCDSTAVIAKVQNCYYNGKRRQIRRKHSTIRELLTTGVVIVDYIRSDDNLADPFMKGLAREKVFKTSERIGL

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

9.6e-10

27.94

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Query:  MRYLKKIQNLGLHYNKFSAV-IEGYNDADWNSFSDDSKATGGYIFNIAGGAVAWKSKKQTILAQSTMESEMIALVAASEEASCLRSLLPEIPTWERPI-P
        + Y+K     GL Y+  + + ++ ++DA + S  D  ++T GY   +    ++WKSKKQ ++++S+ E+E  AL  A++E   L     E+   + P+  
Subjt:  MRYLKKIQNLGLHYNKFSAV-IEGYNDADWNSFSDDSKATGGYIFNIAGGAVAWKSKKQTILAQSTMESEMIALVAASEEASCLRSLLPEIPTWERPI-P

Query:  AILIHCDSTAVIAKVQNCYYNGKRRQIRRKHSTIRE
          L+ CD+TA I    N  ++ + + I     ++RE
Subjt:  AILIHCDSTAVIAKVQNCYYNGKRRQIRRKHSTIRE

Sequences

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CDS sequence

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ATGAGATACCTTAAGAAAATCCAAAACCTAGGATTACATTATAACAAGTTTTCCGCTGTAATTGAAGGTTACAACGATGCTGATTGGAACTCCTTCTCAGATGAC
TCAAAGGCTACAGGTGGCTATATTTTTAATATAGCAGGAGGAGCTGTGGCTTGGAAATCCAAGAAACAGACAATCTTAGCCCAGTCAACGATGGAGTCAGAGATG
ATAGCACTAGTTGCTGCTAGTGAAGAAGCAAGTTGCCTTCGAAGCTTGCTGCCAGAGATTCCCACATGGGAAAGACCGATACCAGCCATACTAATCCATTGTGAT
AGTACTGCAGTGATCGCAAAAGTTCAAAACTGTTACTACAATGGTAAGAGACGACAGATACGTCGTAAGCATAGTACGATTAGAGAATTGCTCACTACTGGTGTA
GTGATAGTGGATTATATACGATCTGACGATAACTTGGCTGATCCTTTTATGAAAGGACTTGCTAGAGAAAAGGTTTTTAAAACCTCAGAAAGAATAGGACTTAAG
CCTATTAAAACTTGA

mRNA sequence

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Protein sequence

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MRYLKKIQNLGLHYNKFSAVIEGYNDADWNSFSDDSKATGGYIFNIAGGAVAWKSKKQTILAQSTMESEMIALVAASEEASCLRSLLPEIPTWERPIPAILIHCD
STAVIAKVQNCYYNGKRRQIRRKHSTIRELLTTGVVIVDYIRSDDNLADPFMKGLAREKVFKTSERIGLKPIKT

Cmc09g0252541 (gene) of Melon (Charmono) v1.1 genome