CuGenDBv2

Gene ID	Cmc10g0260971
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Translation initiation factor 1
Genome location	CMiso1.1chr10:5530..5697
RNA-Seq Expression	Cmc10g0260971
Synteny	Cmc10g0260971
Gene Ontology terms	GO:0006413 - translational initiation (biological process) GO:0009507 - chloroplast (cellular component) GO:0003743 - translation initiation factor activity (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

ASY96339.1 translation initiation factor 1 [Cucumis melo subsp. agrestis]

8.3e-23

98.18

Show/hide

Query:  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILGNRESKFQ
        MKEQKRISEGLITES TNDMFWVCLDNEDPILGYVSGRIQHSFIHILGNRESKFQ
Subjt:  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILGNRESKFQ

ASY96426.1 translation initiation factor 1 [Cucumis melo subsp. agrestis]

3.7e-23

98.18

Show/hide

Query:  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILGNRESKFQ
        MKEQKRISEGLITESLTNDMFWVCLDNE+PILGYVSGRIQHSFIHILGNRESKFQ
Subjt:  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILGNRESKFQ

ASY96600.1 translation initiation factor 1 [Cucumis melo var. conomon]

1.3e-23

100

Show/hide

Query:  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILGNRESKFQ
        MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILGNRESKFQ
Subjt:  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILGNRESKFQ

QJF46419.1 translation initiation factor 1 [Cucumis melo]

1.3e-23

100

Show/hide

Query:  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILGNRESKFQ
        MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILGNRESKFQ
Subjt:  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILGNRESKFQ

QSQ72345.1 translational initiation factor 1 [Benincasa hispida]

9.1e-22

94.55

Show/hide

Query:  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILGNRESKFQ
        MKEQKRISEGLITESLTN MFWVCLDNEDPILGYVSGRI+HSFIHILG+RESKFQ
Subjt:  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILGNRESKFQ

TrEMBL top hits

e value

%identity

Alignment

A0A249RYA5 Translation initiation factor 1

6.2e-24

100

Show/hide

Query:  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILGNRESKFQ
        MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILGNRESKFQ
Subjt:  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILGNRESKFQ

A0A249RYG9 Translation initiation factor 1

6.2e-24

100

Show/hide

Query:  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILGNRESKFQ
        MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILGNRESKFQ
Subjt:  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILGNRESKFQ

A0A249RZ14 Translation initiation factor 1

6.2e-24

100

Show/hide

Query:  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILGNRESKFQ
        MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILGNRESKFQ
Subjt:  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILGNRESKFQ

A0A249RZB2 Translation initiation factor 1

6.2e-24

100

Show/hide

Query:  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILGNRESKFQ
        MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILGNRESKFQ
Subjt:  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILGNRESKFQ

A0A286NFQ7 Translation initiation factor 1

6.2e-24

100

Show/hide

Query:  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILGNRESKFQ
        MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILGNRESKFQ
Subjt:  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILGNRESKFQ

SwissProt top hits

e value

%identity

Alignment

A1XFZ0 Translation initiation factor IF-1, chloroplastic

7.3e-14

69.09

Show/hide

Query:  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILGNRESKFQ
        MKEQK I EGLITESL N MFWV LDNED +LGYVSGRI+ SFI IL     K +
Subjt:  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILGNRESKFQ

A5J1W9 Translation initiation factor IF-1, chloroplastic

6.8e-20

93.62

Show/hide

Query:  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHIL
        MKEQKRISE LITESLTNDMFWVCL+NEDPILGYVSGRI+HSFIHIL
Subjt:  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHIL

P08698 Translation initiation factor IF-1, chloroplastic

4.3e-14

70.91

Show/hide

Query:  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILGNRESKFQ
        MKEQK I EGLITESL N MFWV LDNEDPILGYVSGRI+ S I IL     K +
Subjt:  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILGNRESKFQ

P30070 Translation initiation factor IF-1, plastid

2.5e-14

69.09

Show/hide

Query:  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILGNRESKFQ
        MKEQK I EGLITESLTN MFWV LDN+D I+GYVSG I+HSFI IL   + K +
Subjt:  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILGNRESKFQ

Q95GN8 Translation initiation factor IF-1, chloroplastic

7.3e-14

69.09

Show/hide

Query:  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILGNRESKFQ
        MKEQK I EGLITESL N MFWV LDNED +LGYVSGRI+ SFI IL     K +
Subjt:  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILGNRESKFQ

Arabidopsis top hits

e value

%identity

Alignment

AT4G11175.1 Nucleic acid-binding, OB-fold-like protein

2.1e-08

50.98

Show/hide

Query:  KRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILGNRESKFQ
        K + EGL+TESL N MF V L+N D ILGY+ G+I+ +FI IL   + K +
Subjt:  KRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILGNRESKFQ

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAAAGAGCAAAAAAGGATTTCTGAAGGTTTAATTACTGAATCACTTACCAATGATATGTTTTGGGTTTGTTTAGATAATGAGGATCCAATTCTAGGTTACGTT
TCAGGAAGGATTCAACATAGTTTTATCCATATACTAGGTAATAGAGAGTCAAAATTTCAGTAA

mRNA sequence

Show/hide mRNA sequence

ATGAAAGAGCAAAAAAGGATTTCTGAAGGTTTAATTACTGAATCACTTACCAATGATATGTTTTGGGTTTGTTTAGATAATGAGGATCCAATTCTAGGTTACGTT
TCAGGAAGGATTCAACATAGTTTTATCCATATACTAGGTAATAGAGAGTCAAAATTTCAGTAA

Protein sequence

Show/hide protein sequence

MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILGNRESKFQ

Cmc10g0260971 (gene) of Melon (Charmono) v1.1 genome