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Cmc10g0262811 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc10g0262811
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Descriptionsigma factor binding protein 1, chloroplastic-like
Genome locationCMiso1.1chr10:352147..353172
RNA-Seq ExpressionCmc10g0262811
SyntenyCmc10g0262811
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BAI52954.1 sigma factor binding protein 1 [Citrullus lanatus subsp. vulgaris]2.4e-4270.55Show/hide
Query:  MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM-ASGASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAA----
        MNVTGKKQAKRS+KS AADFKVVYISSPMKVKTSASKFRSLVQ+LTGQDSDAERFME+ AS ASD N QS ASA+F D QL+G++D+VV GK E A    
Subjt:  MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM-ASGASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAA----

Query:  -FGGVNPADDLVFLQNLDGNFAEMFNGFWHDSSTAQTEMTGLSALL
            + P DDL  L NLD +F  MF+GFW DS TAQ EM GL+ALL
Subjt:  -FGGVNPADDLVFLQNLDGNFAEMFNGFWHDSSTAQTEMTGLSALL

KAE8648870.1 hypothetical protein Csa_007950 [Cucumis sativus]5.1e-5383.46Show/hide
Query:  MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAAFGGVN
        M VTGKKQAKRSKKS  A FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASG SDGNG+ WASASF+D Q+MGEEDV+VGGK EA  GGV+
Subjt:  MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAAFGGVN

Query:  PADDLVFLQNLDGNFAEMFNGFWHDSSTAQTEM
        P D+L FLQNLDGN+AEM NGFWHDSSTA++EM
Subjt:  PADDLVFLQNLDGNFAEMFNGFWHDSSTAQTEM

XP_004142385.1 uncharacterized protein LOC101217123 [Cucumis sativus]5.0e-5683.57Show/hide
Query:  MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAAFGGVN
        M VTGKKQAKRSKKS  A FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASG SDGNG+ WASASF+D Q+MGEEDV+VGGK EA  GGV+
Subjt:  MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAAFGGVN

Query:  PADDLVFLQNLDGNFAEMFNGFWHDSSTAQTEMTGLSALL
        P D+L FLQNLDGN+AEM NGFWHDSSTA++EM GLSALL
Subjt:  PADDLVFLQNLDGNFAEMFNGFWHDSSTAQTEMTGLSALL

XP_016900221.1 PREDICTED: sigma factor binding protein 1, chloroplastic-like [Cucumis melo]6.7e-69100Show/hide
Query:  MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAAFGGVN
        MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAAFGGVN
Subjt:  MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAAFGGVN

Query:  PADDLVFLQNLDGNFAEMFNGFWHDSSTAQTEMTGLSALL
        PADDLVFLQNLDGNFAEMFNGFWHDSSTAQTEMTGLSALL
Subjt:  PADDLVFLQNLDGNFAEMFNGFWHDSSTAQTEMTGLSALL

XP_038892750.1 sigma factor binding protein 1, chloroplastic-like [Benincasa hispida]9.7e-4472.6Show/hide
Query:  MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM-ASGASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAA----
        MNVTGKK  KRSKKS AA+FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFME+ AS ASD N QS ASA FLD QL+G++D++V GK E A    
Subjt:  MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM-ASGASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAA----

Query:  -FGGVNPADDLVFLQNLDGNFAEMFNGFWHDSSTAQTEMTGLSALL
            + P DDL  LQN D +FAEMF+GFW+DSSTAQT M GLSALL
Subjt:  -FGGVNPADDLVFLQNLDGNFAEMFNGFWHDSSTAQTEMTGLSALL

TrEMBL top hitse value%identityAlignment
A0A0A0KTR9 VQ domain-containing protein2.4e-5683.57Show/hide
Query:  MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAAFGGVN
        M VTGKKQAKRSKKS  A FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASG SDGNG+ WASASF+D Q+MGEEDV+VGGK EA  GGV+
Subjt:  MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAAFGGVN

Query:  PADDLVFLQNLDGNFAEMFNGFWHDSSTAQTEMTGLSALL
        P D+L FLQNLDGN+AEM NGFWHDSSTA++EM GLSALL
Subjt:  PADDLVFLQNLDGNFAEMFNGFWHDSSTAQTEMTGLSALL

A0A1S4DW56 sigma factor binding protein 1, chloroplastic-like3.2e-69100Show/hide
Query:  MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAAFGGVN
        MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAAFGGVN
Subjt:  MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAAFGGVN

Query:  PADDLVFLQNLDGNFAEMFNGFWHDSSTAQTEMTGLSALL
        PADDLVFLQNLDGNFAEMFNGFWHDSSTAQTEMTGLSALL
Subjt:  PADDLVFLQNLDGNFAEMFNGFWHDSSTAQTEMTGLSALL

A0A5A7SVU6 Sigma factor binding protein 13.2e-69100Show/hide
Query:  MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAAFGGVN
        MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAAFGGVN
Subjt:  MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAAFGGVN

Query:  PADDLVFLQNLDGNFAEMFNGFWHDSSTAQTEMTGLSALL
        PADDLVFLQNLDGNFAEMFNGFWHDSSTAQTEMTGLSALL
Subjt:  PADDLVFLQNLDGNFAEMFNGFWHDSSTAQTEMTGLSALL

A0A6J1G190 sigma factor binding protein 1, chloroplastic-like5.4e-3262.09Show/hide
Query:  MNVTGKKQAK-RSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM--ASGASDGNG-QSWASAS-FLDQQLMGEED-------VVV
        M++T KKQ+K RS+KS AADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFME+  A+ +SD N  QS  SAS FLD QL+G++D       +V 
Subjt:  MNVTGKKQAK-RSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM--ASGASDGNG-QSWASAS-FLDQQLMGEED-------VVV

Query:  GGKEEAAF-GGVNPADDLVFLQNLDGNFAEMFNGFWHDSSTAQTEMTGLSALL
        G  E AA+   V P +DLV ++N D +FAEMF  F HDSS+ QTEM G SALL
Subjt:  GGKEEAAF-GGVNPADDLVFLQNLDGNFAEMFNGFWHDSSTAQTEMTGLSALL

D1MWZ4 Sigma factor binding protein 11.2e-4270.55Show/hide
Query:  MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM-ASGASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAA----
        MNVTGKKQAKRS+KS AADFKVVYISSPMKVKTSASKFRSLVQ+LTGQDSDAERFME+ AS ASD N QS ASA+F D QL+G++D+VV GK E A    
Subjt:  MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM-ASGASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAA----

Query:  -FGGVNPADDLVFLQNLDGNFAEMFNGFWHDSSTAQTEMTGLSALL
            + P DDL  L NLD +F  MF+GFW DS TAQ EM GL+ALL
Subjt:  -FGGVNPADDLVFLQNLDGNFAEMFNGFWHDSSTAQTEMTGLSALL

SwissProt top hitse value%identityAlignment
O80669 Sigma factor binding protein 2, chloroplastic6.0e-0458.54Show/hide
Query:  KRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDS
        KR   +T    KV YIS+PM+V+T  SKFR LVQ+LTGQD+
Subjt:  KRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDS

Q9LDH1 Sigma factor binding protein 1, chloroplastic8.3e-0635.25Show/hide
Query:  KKQAKRSKKSTAAD--FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAAFGGVNPAD
        +K  K+ KK+T+ +   KV YIS+PM+V+T ASKFR LVQ+LTGQD+   +   + S +SD +  S   A  L  +++ +E    G ++   +  +N A+
Subjt:  KKQAKRSKKSTAAD--FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAAFGGVNPAD

Query:  DLVFLQNLDGNFAEMF-NGFWH
        D+     +   F+  F NGF++
Subjt:  DLVFLQNLDGNFAEMF-NGFWH

Arabidopsis top hitse value%identityAlignment
AT2G41180.1 VQ motif-containing protein4.2e-0558.54Show/hide
Query:  KRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDS
        KR   +T    KV YIS+PM+V+T  SKFR LVQ+LTGQD+
Subjt:  KRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDS

AT3G56710.1 sigma factor binding protein 15.9e-0735.25Show/hide
Query:  KKQAKRSKKSTAAD--FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAAFGGVNPAD
        +K  K+ KK+T+ +   KV YIS+PM+V+T ASKFR LVQ+LTGQD+   +   + S +SD +  S   A  L  +++ +E    G ++   +  +N A+
Subjt:  KKQAKRSKKSTAAD--FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAAFGGVNPAD

Query:  DLVFLQNLDGNFAEMF-NGFWH
        D+     +   F+  F NGF++
Subjt:  DLVFLQNLDGNFAEMF-NGFWH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGTAACAGGCAAAAAACAGGCAAAGAGAAGCAAGAAATCGACGGCGGCGGATTTCAAAGTAGTGTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCGAA
GTTTCGATCTCTTGTCCAGAAACTCACCGGTCAGGACTCGGATGCCGAGAGATTCATGGAGATGGCATCGGGTGCTAGTGATGGGAATGGACAATCGTGGGCATCGGCGT
CGTTCCTAGACCAGCAACTCATGGGCGAGGAGGATGTAGTGGTGGGAGGAAAGGAGGAAGCGGCGTTTGGGGGTGTGAATCCGGCGGATGATTTGGTGTTTCTGCAGAAT
TTGGATGGGAATTTTGCAGAAATGTTCAATGGGTTTTGGCATGATTCTTCGACGGCACAAACTGAGATGACAGGTTTAAGTGCACTGTTGTAG
mRNA sequenceShow/hide mRNA sequence
GGAAAAAAAAATGATAGTATATATATTCTTTTGTTCCGCTTGGGTGTGGGAGATTACGGGTCCTTTAAGGACATCTGGAAAGAAAGAACCTTCTATACCTTTTCCAATTT
TCTCTTTGTTTCGTTTTCATTGGGAATTTTCCTTTTCCCTTAAAATTTCCAACCCAACCCATTTCCAGGAAACCGCCATTTGTTTGTTTCCCAAGAAAATTTCTCCAATC
CGTACACCCTTATATATAAATCCCACCACCACCATATATCTTCCACTCCAAAATCACTCAAATTATAAAACCCCTGATTATCTCCATTTAAATTAAAAAGAAAAAAAGGA
AAAGAAAAGAGGAGAAAATTCCCGATGAATGTAACAGGCAAAAAACAGGCAAAGAGAAGCAAGAAATCGACGGCGGCGGATTTCAAAGTAGTGTACATTTCGAGTCCGAT
GAAGGTGAAAACCAGCGCCTCGAAGTTTCGATCTCTTGTCCAGAAACTCACCGGTCAGGACTCGGATGCCGAGAGATTCATGGAGATGGCATCGGGTGCTAGTGATGGGA
ATGGACAATCGTGGGCATCGGCGTCGTTCCTAGACCAGCAACTCATGGGCGAGGAGGATGTAGTGGTGGGAGGAAAGGAGGAAGCGGCGTTTGGGGGTGTGAATCCGGCG
GATGATTTGGTGTTTCTGCAGAATTTGGATGGGAATTTTGCAGAAATGTTCAATGGGTTTTGGCATGATTCTTCGACGGCACAAACTGAGATGACAGGTTTAAGTGCACT
GTTGTAGTTTCGGAGTAGTAGTTCATAGTTTCTCCCATTTTTTTTTTATTTTTTTGGTTTAACTAAAATAATGCGAGGTGGAGTTGTATAGAAAGATGAAACCTTTCCTA
GCCTCTTTCTTTGTTCATAGTTTATATTATTTTGAATATAATATATACGAGAATTTTGAGAATTTAATTATAATCAATGTTTTAATTTTTTATGTGTGTAGTGTGTTTGC
ACTGTTGGGATTCTTTTAATACGATTTTTTTCAGTT
Protein sequenceShow/hide protein sequence
MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAAFGGVNPADDLVFLQN
LDGNFAEMFNGFWHDSSTAQTEMTGLSALL