; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc10g0264471 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc10g0264471
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Descriptiontransformer-2 protein homolog alpha-like
Genome locationCMiso1.1chr10:1304668..1307677
RNA-Seq ExpressionCmc10g0264471
SyntenyCmc10g0264471
Gene Ontology termsGO:0007129 - synapsis (biological process)
GO:0036297 - interstrand cross-link repair (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0004528 - phosphodiesterase I activity (molecular function)
GO:0008409 - 5'-3' exonuclease activity (molecular function)
GO:0017108 - 5'-flap endonuclease activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0070336 - flap-structured DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN52709.2 hypothetical protein Csa_008507 [Cucumis sativus]8.5e-3783.5Show/hide
Query:  MGRRR-EIAFILVILYSSMMTSFAFTQLFTIDSKQQLIVREYNNSRFVERRGGGRGVIPIYVAGASSGHHGKHKRNLGNRHNIYIEFIVVGVSISTALLC
        MGRRR E+AFILVIL SSMM SFAFTQLFTIDSKQ + VRE+NNSRFVERRGGGRGVIPIYVAGASSG HGKH  +LGNR N YIEFI++GVSIS ALLC
Subjt:  MGRRR-EIAFILVILYSSMMTSFAFTQLFTIDSKQQLIVREYNNSRFVERRGGGRGVIPIYVAGASSGHHGKHKRNLGNRHNIYIEFIVVGVSISTALLC

Query:  RFI
        RFI
Subjt:  RFI
XP_008446753.1 PREDICTED: transformer-2 protein homolog alpha-like [Cucumis melo]1.9e-0439.84Show/hide
Query:  MGRRR---EIAFILVILYSSMMTSFAFTQLFTIDS--KQQLIVREYNNSRF-VERRGGGRGVIPIY---------------VAGASSGHHGKHKRNLGNR
        MGRRR   EIA IL+++YSSM+ SFAF QLF  DS   Q+    E +  R+ +E R G    IPI+                 G  +G  G H RN    
Subjt:  MGRRR---EIAFILVILYSSMMTSFAFTQLFTIDS--KQQLIVREYNNSRF-VERRGGGRGVIPIY---------------VAGASSGHHGKHKRNLGNR

Query:  HNIYIEFIVVGVSISTALLCRFI
           Y++FI   VSIS A LC  I
Subjt:  HNIYIEFIVVGVSISTALLCRFI
TrEMBL top hitse value%identityAlignment
A0A0A0KTE6 Uncharacterized protein5.7e-3183.53Show/hide
Query:  MMTSFAFTQLFTIDSKQQLIVREYNNSRFVERRGGGRGVIPIYVAGASSGHHGKHKRNLGNRHNIYIEFIVVGVSISTALLCRFI
        MM SFAFTQLFTIDSKQ + VRE+NNSRFVERRGGGRGVIPIYVAGASSG HGKH  +LGNR N YIEFI++GVSIS ALLCRFI
Subjt:  MMTSFAFTQLFTIDSKQQLIVREYNNSRFVERRGGGRGVIPIYVAGASSGHHGKHKRNLGNRHNIYIEFIVVGVSISTALLCRFI
A0A1S3BFU5 transformer-2 protein homolog alpha-like9.2e-0539.84Show/hide
Query:  MGRRR---EIAFILVILYSSMMTSFAFTQLFTIDS--KQQLIVREYNNSRF-VERRGGGRGVIPIY---------------VAGASSGHHGKHKRNLGNR
        MGRRR   EIA IL+++YSSM+ SFAF QLF  DS   Q+    E +  R+ +E R G    IPI+                 G  +G  G H RN    
Subjt:  MGRRR---EIAFILVILYSSMMTSFAFTQLFTIDS--KQQLIVREYNNSRF-VERRGGGRGVIPIY---------------VAGASSGHHGKHKRNLGNR

Query:  HNIYIEFIVVGVSISTALLCRFI
           Y++FI   VSIS A LC  I
Subjt:  HNIYIEFIVVGVSISTALLCRFI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGGGGAGAAGGAAGTGGCGGCGCAGATGATGATGACGGTGACAGTGACAGTGGAGGTGACGGTCACGGTGGAGGCGGAAGTGGATGTGGATGTGAAAGAC
GCAGAGGTGACGACGGCGGTGGAAGTGGAAGTGGAAGTGCGGATGACGGCAGCGGCCGGGAAAGAGTCGGTAACAGTGGCACAGAAAATCACCATGAGAGAAATA
GAGCAACAAAAAATGGGAAGAAGAAGAGAGATTGCATTCATTTTGGTAATTCTTTATTCGTCTATGATGACTTCCTTTGCTTTCACACAACTCTTCACAATAGAT
TCTAAACAGCAATTAATTGTTAGAGAATACAATAATTCAAGATTTGTTGAACGTCGAGGGGGAGGTAGGGGAGTGATCCCAATATATGTGGCTGGCGCTTCATCA
GGCCATCATGGAAAGCATAAGCGCAACCTTGGAAATCGTCATAATATCTATATAGAGTTTATAGTAGTTGGAGTTTCCATCTCTACTGCACTTCTGTGTAGATTT
ATATAA
mRNA sequenceShow/hide mRNA sequence
TGATAAAAAGAAAGAAGTTTTTCTGTTCAGATCAATTCCCATTATAAAAGAAAATGTCCCCTGCCTAAATAAATCAATCAAGAAACAATAAAATTCCCAGACTCT
CTGTATTCGTTCACCCTTCTTCTACTGCCCCTTTCATAAGATGGAGGGGGAGAAGGAAGTGGCGGCGCAGATGATGATGACGGTGACAGTGACAGTGGAGGTGAC
GGTCACGGTGGAGGCGGAAGTGGATGTGGATGTGAAAGACGCAGAGGTGACGACGGCGGTGGAAGTGGAAGTGGAAGTGCGGATGACGGCAGCGGCCGGGAAAGA
GTCGGTAACAGTGGCACAGAAAATCACCATGAGAGAAATAGAGCAACAAAAAATGGGAAGAAGAAGAGAGATTGCATTCATTTTGGTAATTCTTTATTCGTCTAT
GATGACTTCCTTTGCTTTCACACAACTCTTCACAATAGATTCTAAACAGCAATTAATTGTTAGAGAATACAATAATTCAAGATTTGTTGAACGTCGAGGGGGAGG
TAGGGGAGTGATCCCAATATATGTGGCTGGCGCTTCATCAGGCCATCATGGAAAGCATAAGCGCAACCTTGGAAATCGTCATAATATCTATATAGAGTTTATAGT
AGTTGGAGTTTCCATCTCTACTGCACTTCTGTGTAGATTTATATAATACCCAAACATATTCCAAACCTTTGATAAAGTGTAATACACTTAGAATCTTTTGTTATG
CAATTTATAAGTTGCCATATACGGTCGTCACAAGGTTAATCGTGTGAGACCGACGTGCACTATTGATGTTTGGATTGAGGAATATGTGTTAGAAGACTAGAAGCT
ATTTCAAGGAATTTTCTCACGTTTATTTATTTATTAAAATATTATTTTGCTCTGTATAATTTAATGTTTGTTCGATTTTAATTTCTATATTTTTAATTATTCAAT
TTTAA
Protein sequenceShow/hide protein sequence
MEGEKEVAAQMMMTVTVTVEVTVTVEAEVDVDVKDAEVTTAVEVEVEVRMTAAAGKESVTVAQKITMREIEQQKMGRRREIAFILVILYSSMMTSFAFTQLFTID
SKQQLIVREYNNSRFVERRGGGRGVIPIYVAGASSGHHGKHKRNLGNRHNIYIEFIVVGVSISTALLCRFI