; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc10g0267601 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc10g0267601
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Descriptiontranscription factor PRE6-like
Genome locationCMiso1.1chr10:2933124..2935259
RNA-Seq ExpressionCmc10g0267601
SyntenyCmc10g0267601
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135185.1 transcription factor PRE6 [Cucumis sativus]6.4e-3998.95Show/hide
Query:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM
        MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLS+LLASTDPESAQAAIIRSLLM
Subjt:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM

XP_008446331.1 PREDICTED: transcription factor PRE6-like [Cucumis melo]2.9e-39100Show/hide
Query:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM
        MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM
Subjt:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM

XP_022151230.1 transcription factor PRE6-like [Momordica charantia]7.3e-3592.63Show/hide
Query:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM
        MS RSSRSRRS V SRNISD+QIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIRSLQREVDDLS+RLS+LLASTDPESAQAAIIRSLLM
Subjt:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM

XP_022968308.1 transcription factor PRE6-like [Cucurbita maxima]6.2e-3491.58Show/hide
Query:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM
        MS RSSRSRRS V S NISDEQIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIRSLQREV DLSDRLS+LL STDPESAQAAIIRSLLM
Subjt:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM

XP_038893351.1 transcription factor PRE6-like [Benincasa hispida]1.2e-3796.84Show/hide
Query:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM
        MSGRSSRSRRSGV SRNISD+QIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLS+LLASTDPESAQAAIIRSLLM
Subjt:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM

TrEMBL top hitse value%identityAlignment
A0A0A0KQJ7 Transcription regulator3.1e-3998.95Show/hide
Query:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM
        MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLS+LLASTDPESAQAAIIRSLLM
Subjt:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM

A0A1S3BFH5 transcription factor PRE6-like1.4e-39100Show/hide
Query:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM
        MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM
Subjt:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM

A0A6J1DAM4 transcription factor PRE6-like3.5e-3592.63Show/hide
Query:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM
        MS RSSRSRRS V SRNISD+QIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIRSLQREVDDLS+RLS+LLASTDPESAQAAIIRSLLM
Subjt:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM

A0A6J1G268 transcription factor PRE6-like3.9e-3491.58Show/hide
Query:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM
        MS RSSRSRRS V S NISDEQIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIRSLQREV DLSDRLS+LL STDPESAQAAIIRSLLM
Subjt:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM

A0A6J1HXN1 transcription factor PRE6-like3.0e-3491.58Show/hide
Query:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM
        MS RSSRSRRS V S NISDEQIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIRSLQREV DLSDRLS+LL STDPESAQAAIIRSLLM
Subjt:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM

SwissProt top hitse value%identityAlignment
B8APB5 Transcription factor ILI61.6e-2470.53Show/hide
Query:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM
        MS R SRSR+S  GS  I+DEQI+DL+SKLQ L+PE R  RS+ RV +S+VLQETCNYIRSL +EVDDLS+RLS+LLA++D  SAQAAIIRSLLM
Subjt:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM

Q0DUR2 Transcription factor ILI61.6e-2470.53Show/hide
Query:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM
        MS R SRSR+S  GS  I+DEQI+DL+SKLQ L+PE R  RS+ RV +S+VLQETCNYIRSL +EVDDLS+RLS+LLA++D  SAQAAIIRSLLM
Subjt:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM

Q8GW32 Transcription factor PRE61.7e-2676.34Show/hide
Query:  SGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLL
        S RSSRSR+S  GS  ISD+QI+DL+SKLQ LIPE+R  R S +VSASKVLQETCNYIR+L REVDDLSDRLS+LLASTD  SA+AAIIRSLL
Subjt:  SGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLL

Q9CA64 Transcription factor PRE37.9e-2467.02Show/hide
Query:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLL
        MSGR SRSR+S  G+  IS++QI DLI KLQQL+PE+R+ R S +VSA++VLQ+TCNYIR+L REVDDLS+RLS+LLA++D  +AQAA+IRSLL
Subjt:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLL

Q9LXG5 Transcription factor PRE22.1e-2468.89Show/hide
Query:  SSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLL
        SSR  R    S  ISD+QI DLISKL+Q IPEIR  R S+ VSASKVLQETCNYIR+L +E DDLSDRL+QLL S DP S QAA+IRSL+
Subjt:  SSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLL

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.2e-2776.34Show/hide
Query:  SGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLL
        S RSSRSR+S  GS  ISD+QI+DL+SKLQ LIPE+R  R S +VSASKVLQETCNYIR+L REVDDLSDRLS+LLASTD  SA+AAIIRSLL
Subjt:  SGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 15.6e-2567.02Show/hide
Query:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLL
        MSGR SRSR+S  G+  IS++QI DLI KLQQL+PE+R+ R S +VSA++VLQ+TCNYIR+L REVDDLS+RLS+LLA++D  +AQAA+IRSLL
Subjt:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLL

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein6.2e-2466.32Show/hide
Query:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM
        MS R  RSR++   SR ISD+Q+ DL+SKL+Q +PEI   R S +VSASKVLQETCNYIR L REVD+LSDRLSQLL S D +S +AA+IRSLLM
Subjt:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM

AT3G47710.1 BANQUO 36.2e-2465.26Show/hide
Query:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM
        MS R SRSR++G     I+DEQI DL+ +L +L+PE+ N R S +VSAS+VLQETC+YIR+L +EVDDLS+RLSQLL STD  SAQAA+IRSLLM
Subjt:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM

AT5G15160.1 BANQUO 21.5e-2568.89Show/hide
Query:  SSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLL
        SSR  R    S  ISD+QI DLISKL+Q IPEIR  R S+ VSASKVLQETCNYIR+L +E DDLSDRL+QLL S DP S QAA+IRSL+
Subjt:  SSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGGGAGAAGCTCGCGTTCTAGGCGCTCGGGTGTTGGTTCGAGGAATATTTCTGACGAACAAATTGCTGATTTGATATCCAAACTACAACAGCTCATTCCGGAGAT
TCGCAATGGTCGTTCCTCCTCTAGGGTATCGGCTTCAAAGGTTCTACAAGAGACATGCAACTATATAAGAAGCTTACAGAGAGAGGTGGATGATTTAAGCGATCGATTAT
CACAACTGTTAGCATCAACGGATCCTGAAAGTGCTCAAGCTGCCATAATTAGAAGCTTACTTATGTAG
mRNA sequenceShow/hide mRNA sequence
TTGAAAGTTTTAGCCCCAGTTTGGAGACAGAAGGAGCAGGGACGAAATAAAGACAATGTCGGGGAGAAGCTCGCGTTCTAGGCGCTCGGGTGTTGGTTCGAGGAATATTT
CTGACGAACAAATTGCTGATTTGATATCCAAACTACAACAGCTCATTCCGGAGATTCGCAATGGTCGTTCCTCCTCTAGGGTATCGGCTTCAAAGGTTCTACAAGAGACA
TGCAACTATATAAGAAGCTTACAGAGAGAGGTGGATGATTTAAGCGATCGATTATCACAACTGTTAGCATCAACGGATCCTGAAAGTGCTCAAGCTGCCATAATTAGAAG
CTTACTTATGTAGTATATTAATCAACCGAATTTCCCTAAGTTTAATTACCTTCTTCTATACTCATAATTTTCTCTTCACCCAACCACACCCCCCCTACTACCCATCCATG
CAATTAAATTAATATAAACATATATAAATTGAAGTCGTATAATAAAAGGGACGATATTGTGATCTAGACTTTACTTTTAATTAATTACTCTCGTAGATAATATATATGTA
TAATTGAATTTTGTTGCTTAATGGTGATTAGAGAAGAAATTATGTGTACGCATGAAAGTTGGCAAATATATTGTATTTGTTCCCACGATATAATATCTCACAAGGTTGAT
TGA
Protein sequenceShow/hide protein sequence
MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM