CuGenDBv2

Gene ID	Cmc10g0268111
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr10:3236807..3237620
RNA-Seq Expression	Cmc10g0268111
Synteny	Cmc10g0268111
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0032849.1 reverse transcriptase [Cucumis melo var. makuwa]

9.3e-114

80.8

Show/hide

Query:  MVIPLNSSENPVETVSKEIMCVLEKYRDVIPDSLPKSLPPRRMIDHEIELVSGAKP-----YRMVPPELAELRKQLDQLLNVGFIRHAKAPYGALVLF-R
        M IPL SSEN  ETV KEIM VLEKYRDV+PDSLPKSLPPRRMIDHEIELV GAKP     YRM PPELAELRKQLD+LLN GFIR AKAPYGA VLF R
Subjt:  MVIPLNSSENPVETVSKEIMCVLEKYRDVIPDSLPKSLPPRRMIDHEIELVSGAKP-----YRMVPPELAELRKQLDQLLNVGFIRHAKAPYGALVLF-R

Query:  KKDESLRLCIDYRAMNK------------------AHGSQ---QLDLRSGYYQVRIAERDEPKTTCVTRYSAFEFLVMPFGLTNAPTTFCTLMNQVFHEY
        KKD SLRLCIDYRA+NK                   HG++   +LDLRSGYYQVRIAE DEPKTTCVTRY AFEFLVMPFGLTNAP TFCTLMNQVFHEY
Subjt:  KKDESLRLCIDYRAMNK------------------AHGSQ---QLDLRSGYYQVRIAERDEPKTTCVTRYSAFEFLVMPFGLTNAPTTFCTLMNQVFHEY

Query:  LEKFVVVYLDDIVVYITTMEEYRDHLQKVFQKLKENQLYVKREKCSFTQERINFLGHVIECGRIGMEEGKIAAIRD
        L+KFVVVYLDDIVVY TTMEE+RDHLQKVFQKLKENQLYVKREKCSF QERINFLGHVIECGRIGMEEGKIAAIRD
Subjt:  LEKFVVVYLDDIVVYITTMEEYRDHLQKVFQKLKENQLYVKREKCSFTQERINFLGHVIECGRIGMEEGKIAAIRD

KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]

9.3e-114

80.8

Show/hide

Query:  MVIPLNSSENPVETVSKEIMCVLEKYRDVIPDSLPKSLPPRRMIDHEIELVSGAKP-----YRMVPPELAELRKQLDQLLNVGFIRHAKAPYGALVLF-R
        M IPL SSEN  ETV KEIM VLEKYRDV+PDSLPKSLPPRRMIDHEIELV GAKP     YRM PPELAELRKQLD+LLN GFIR AKAPYGA VLF R
Subjt:  MVIPLNSSENPVETVSKEIMCVLEKYRDVIPDSLPKSLPPRRMIDHEIELVSGAKP-----YRMVPPELAELRKQLDQLLNVGFIRHAKAPYGALVLF-R

Query:  KKDESLRLCIDYRAMNK------------------AHGSQ---QLDLRSGYYQVRIAERDEPKTTCVTRYSAFEFLVMPFGLTNAPTTFCTLMNQVFHEY
        KKD SLRLCIDYRA+NK                   HG++   +LDLRSGYYQVRIAE DEPKTTCVTRY AFEFLVMPFGLTNAP TFCTLMNQVFHEY
Subjt:  KKDESLRLCIDYRAMNK------------------AHGSQ---QLDLRSGYYQVRIAERDEPKTTCVTRYSAFEFLVMPFGLTNAPTTFCTLMNQVFHEY

Query:  LEKFVVVYLDDIVVYITTMEEYRDHLQKVFQKLKENQLYVKREKCSFTQERINFLGHVIECGRIGMEEGKIAAIRD
        L+KFVVVYLDDIVVY TTMEE+RDHLQKVFQKLKENQLYVKREKCSF QERINFLGHVIECGRIGMEEGKIAAIRD
Subjt:  LEKFVVVYLDDIVVYITTMEEYRDHLQKVFQKLKENQLYVKREKCSFTQERINFLGHVIECGRIGMEEGKIAAIRD

KAA0063412.1 reverse transcriptase [Cucumis melo var. makuwa]

9.3e-114

80.8

Show/hide

Query:  MVIPLNSSENPVETVSKEIMCVLEKYRDVIPDSLPKSLPPRRMIDHEIELVSGAKP-----YRMVPPELAELRKQLDQLLNVGFIRHAKAPYGALVLF-R
        M IPL SSEN  ETV KEIM VLEKYRDV+PDSLPKSLPPRRMIDHEIELV GAKP     YRM PPELAELRKQLD+LLN GFIR AKAPYGA VLF R
Subjt:  MVIPLNSSENPVETVSKEIMCVLEKYRDVIPDSLPKSLPPRRMIDHEIELVSGAKP-----YRMVPPELAELRKQLDQLLNVGFIRHAKAPYGALVLF-R

Query:  KKDESLRLCIDYRAMNK------------------AHGSQ---QLDLRSGYYQVRIAERDEPKTTCVTRYSAFEFLVMPFGLTNAPTTFCTLMNQVFHEY
        KKD SLRLCIDYRA+NK                   HG++   +LDLRSGYYQVRIAE DEPKTTCVTRY AFEFLVMPFGLTNAP TFCTLMNQVFHEY
Subjt:  KKDESLRLCIDYRAMNK------------------AHGSQ---QLDLRSGYYQVRIAERDEPKTTCVTRYSAFEFLVMPFGLTNAPTTFCTLMNQVFHEY

Query:  LEKFVVVYLDDIVVYITTMEEYRDHLQKVFQKLKENQLYVKREKCSFTQERINFLGHVIECGRIGMEEGKIAAIRD
        L+KFVVVYLDDIVVY TTMEE+RDHLQKVFQKLKENQLYVKREKCSF QERINFLGHVIECGRIGMEEGKIAAIRD
Subjt:  LEKFVVVYLDDIVVYITTMEEYRDHLQKVFQKLKENQLYVKREKCSFTQERINFLGHVIECGRIGMEEGKIAAIRD

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]

9.3e-114

80.8

Show/hide

Query:  MVIPLNSSENPVETVSKEIMCVLEKYRDVIPDSLPKSLPPRRMIDHEIELVSGAKP-----YRMVPPELAELRKQLDQLLNVGFIRHAKAPYGALVLF-R
        M IPL SSEN  ETV KEIM VLEKYRDV+PDSLPKSLPPRRMIDHEIELV GAKP     YRM PPELAELRKQLD+LLN GFIR AKAPYGA VLF R
Subjt:  MVIPLNSSENPVETVSKEIMCVLEKYRDVIPDSLPKSLPPRRMIDHEIELVSGAKP-----YRMVPPELAELRKQLDQLLNVGFIRHAKAPYGALVLF-R

Query:  KKDESLRLCIDYRAMNK------------------AHGSQ---QLDLRSGYYQVRIAERDEPKTTCVTRYSAFEFLVMPFGLTNAPTTFCTLMNQVFHEY
        KKD SLRLCIDYRA+NK                   HG++   +LDLRSGYYQVRIAE DEPKTTCVTRY AFEFLVMPFGLTNAP TFCTLMNQVFHEY
Subjt:  KKDESLRLCIDYRAMNK------------------AHGSQ---QLDLRSGYYQVRIAERDEPKTTCVTRYSAFEFLVMPFGLTNAPTTFCTLMNQVFHEY

Query:  LEKFVVVYLDDIVVYITTMEEYRDHLQKVFQKLKENQLYVKREKCSFTQERINFLGHVIECGRIGMEEGKIAAIRD
        L+KFVVVYLDDIVVY TTMEE+RDHLQKVFQKLKENQLYVKREKCSF QERINFLGHVIECGRIGMEEGKIAAIRD
Subjt:  LEKFVVVYLDDIVVYITTMEEYRDHLQKVFQKLKENQLYVKREKCSFTQERINFLGHVIECGRIGMEEGKIAAIRD

TYK28713.1 reverse transcriptase [Cucumis melo var. makuwa]

9.3e-114

80.8

Show/hide

Query:  MVIPLNSSENPVETVSKEIMCVLEKYRDVIPDSLPKSLPPRRMIDHEIELVSGAKP-----YRMVPPELAELRKQLDQLLNVGFIRHAKAPYGALVLF-R
        M IPL SSEN  ETV KEIM VLEKYRDV+PDSLPKSLPPRRMIDHEIELV GAKP     YRM PPELAELRKQLD+LLN GFIR AKAPYGA VLF R
Subjt:  MVIPLNSSENPVETVSKEIMCVLEKYRDVIPDSLPKSLPPRRMIDHEIELVSGAKP-----YRMVPPELAELRKQLDQLLNVGFIRHAKAPYGALVLF-R

Query:  KKDESLRLCIDYRAMNK------------------AHGSQ---QLDLRSGYYQVRIAERDEPKTTCVTRYSAFEFLVMPFGLTNAPTTFCTLMNQVFHEY
        KKD SLRLCIDYRA+NK                   HG++   +LDLRSGYYQVRIAE DEPKTTCVTRY AFEFLVMPFGLTNAP TFCTLMNQVFHEY
Subjt:  KKDESLRLCIDYRAMNK------------------AHGSQ---QLDLRSGYYQVRIAERDEPKTTCVTRYSAFEFLVMPFGLTNAPTTFCTLMNQVFHEY

Query:  LEKFVVVYLDDIVVYITTMEEYRDHLQKVFQKLKENQLYVKREKCSFTQERINFLGHVIECGRIGMEEGKIAAIRD
        L+KFVVVYLDDIVVY TTMEE+RDHLQKVFQKLKENQLYVKREKCSF QERINFLGHVIECGRIGMEEGKIAAIRD
Subjt:  LEKFVVVYLDDIVVYITTMEEYRDHLQKVFQKLKENQLYVKREKCSFTQERINFLGHVIECGRIGMEEGKIAAIRD

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T0E2 Reverse transcriptase

4.5e-114

80.8

Show/hide

Query:  MVIPLNSSENPVETVSKEIMCVLEKYRDVIPDSLPKSLPPRRMIDHEIELVSGAKP-----YRMVPPELAELRKQLDQLLNVGFIRHAKAPYGALVLF-R
        M IPL SSEN  ETV KEIM VLEKYRDV+PDSLPKSLPPRRMIDHEIELV GAKP     YRM PPELAELRKQLD+LLN GFIR AKAPYGA VLF R
Subjt:  MVIPLNSSENPVETVSKEIMCVLEKYRDVIPDSLPKSLPPRRMIDHEIELVSGAKP-----YRMVPPELAELRKQLDQLLNVGFIRHAKAPYGALVLF-R

Query:  KKDESLRLCIDYRAMNK------------------AHGSQ---QLDLRSGYYQVRIAERDEPKTTCVTRYSAFEFLVMPFGLTNAPTTFCTLMNQVFHEY
        KKD SLRLCIDYRA+NK                   HG++   +LDLRSGYYQVRIAE DEPKTTCVTRY AFEFLVMPFGLTNAP TFCTLMNQVFHEY
Subjt:  KKDESLRLCIDYRAMNK------------------AHGSQ---QLDLRSGYYQVRIAERDEPKTTCVTRYSAFEFLVMPFGLTNAPTTFCTLMNQVFHEY

Query:  LEKFVVVYLDDIVVYITTMEEYRDHLQKVFQKLKENQLYVKREKCSFTQERINFLGHVIECGRIGMEEGKIAAIRD
        L+KFVVVYLDDIVVY TTMEE+RDHLQKVFQKLKENQLYVKREKCSF QERINFLGHVIECGRIGMEEGKIAAIRD
Subjt:  LEKFVVVYLDDIVVYITTMEEYRDHLQKVFQKLKENQLYVKREKCSFTQERINFLGHVIECGRIGMEEGKIAAIRD

A0A5A7UXR6 Reverse transcriptase

4.5e-114

80.8

Show/hide

Query:  MVIPLNSSENPVETVSKEIMCVLEKYRDVIPDSLPKSLPPRRMIDHEIELVSGAKP-----YRMVPPELAELRKQLDQLLNVGFIRHAKAPYGALVLF-R
        M IPL SSEN  ETV KEIM VLEKYRDV+PDSLPKSLPPRRMIDHEIELV GAKP     YRM PPELAELRKQLD+LLN GFIR AKAPYGA VLF R
Subjt:  MVIPLNSSENPVETVSKEIMCVLEKYRDVIPDSLPKSLPPRRMIDHEIELVSGAKP-----YRMVPPELAELRKQLDQLLNVGFIRHAKAPYGALVLF-R

Query:  KKDESLRLCIDYRAMNK------------------AHGSQ---QLDLRSGYYQVRIAERDEPKTTCVTRYSAFEFLVMPFGLTNAPTTFCTLMNQVFHEY
        KKD SLRLCIDYRA+NK                   HG++   +LDLRSGYYQVRIAE DEPKTTCVTRY AFEFLVMPFGLTNAP TFCTLMNQVFHEY
Subjt:  KKDESLRLCIDYRAMNK------------------AHGSQ---QLDLRSGYYQVRIAERDEPKTTCVTRYSAFEFLVMPFGLTNAPTTFCTLMNQVFHEY

Query:  LEKFVVVYLDDIVVYITTMEEYRDHLQKVFQKLKENQLYVKREKCSFTQERINFLGHVIECGRIGMEEGKIAAIRD
        L+KFVVVYLDDIVVY TTMEE+RDHLQKVFQKLKENQLYVKREKCSF QERINFLGHVIECGRIGMEEGKIAAIRD
Subjt:  LEKFVVVYLDDIVVYITTMEEYRDHLQKVFQKLKENQLYVKREKCSFTQERINFLGHVIECGRIGMEEGKIAAIRD

A0A5D3B7E7 Reverse transcriptase

4.5e-114

80.8

Show/hide

Query:  MVIPLNSSENPVETVSKEIMCVLEKYRDVIPDSLPKSLPPRRMIDHEIELVSGAKP-----YRMVPPELAELRKQLDQLLNVGFIRHAKAPYGALVLF-R
        M IPL SSEN  ETV KEIM VLEKYRDV+PDSLPKSLPPRRMIDHEIELV GAKP     YRM PPELAELRKQLD+LLN GFIR AKAPYGA VLF R
Subjt:  MVIPLNSSENPVETVSKEIMCVLEKYRDVIPDSLPKSLPPRRMIDHEIELVSGAKP-----YRMVPPELAELRKQLDQLLNVGFIRHAKAPYGALVLF-R

Query:  KKDESLRLCIDYRAMNK------------------AHGSQ---QLDLRSGYYQVRIAERDEPKTTCVTRYSAFEFLVMPFGLTNAPTTFCTLMNQVFHEY
        KKD SLRLCIDYRA+NK                   HG++   +LDLRSGYYQVRIAE DEPKTTCVTRY AFEFLVMPFGLTNAP TFCTLMNQVFHEY
Subjt:  KKDESLRLCIDYRAMNK------------------AHGSQ---QLDLRSGYYQVRIAERDEPKTTCVTRYSAFEFLVMPFGLTNAPTTFCTLMNQVFHEY

Query:  LEKFVVVYLDDIVVYITTMEEYRDHLQKVFQKLKENQLYVKREKCSFTQERINFLGHVIECGRIGMEEGKIAAIRD
        L+KFVVVYLDDIVVY TTMEE+RDHLQKVFQKLKENQLYVKREKCSF QERINFLGHVIECGRIGMEEGKIAAIRD
Subjt:  LEKFVVVYLDDIVVYITTMEEYRDHLQKVFQKLKENQLYVKREKCSFTQERINFLGHVIECGRIGMEEGKIAAIRD

A0A5D3BRZ6 Reverse transcriptase

4.5e-114

80.8

Show/hide

Query:  MVIPLNSSENPVETVSKEIMCVLEKYRDVIPDSLPKSLPPRRMIDHEIELVSGAKP-----YRMVPPELAELRKQLDQLLNVGFIRHAKAPYGALVLF-R
        M IPL SSEN  ETV KEIM VLEKYRDV+PDSLPKSLPPRRMIDHEIELV GAKP     YRM PPELAELRKQLD+LLN GFIR AKAPYGA VLF R
Subjt:  MVIPLNSSENPVETVSKEIMCVLEKYRDVIPDSLPKSLPPRRMIDHEIELVSGAKP-----YRMVPPELAELRKQLDQLLNVGFIRHAKAPYGALVLF-R

Query:  KKDESLRLCIDYRAMNK------------------AHGSQ---QLDLRSGYYQVRIAERDEPKTTCVTRYSAFEFLVMPFGLTNAPTTFCTLMNQVFHEY
        KKD SLRLCIDYRA+NK                   HG++   +LDLRSGYYQVRIAE DEPKTTCVTRY AFEFLVMPFGLTNAP TFCTLMNQVFHEY
Subjt:  KKDESLRLCIDYRAMNK------------------AHGSQ---QLDLRSGYYQVRIAERDEPKTTCVTRYSAFEFLVMPFGLTNAPTTFCTLMNQVFHEY

Query:  LEKFVVVYLDDIVVYITTMEEYRDHLQKVFQKLKENQLYVKREKCSFTQERINFLGHVIECGRIGMEEGKIAAIRD
        L+KFVVVYLDDIVVY TTMEE+RDHLQKVFQKLKENQLYVKREKCSF QERINFLGHVIECGRIGMEEGKIAAIRD
Subjt:  LEKFVVVYLDDIVVYITTMEEYRDHLQKVFQKLKENQLYVKREKCSFTQERINFLGHVIECGRIGMEEGKIAAIRD

A0A5D3C4R1 Reverse transcriptase

4.5e-114

80.8

Show/hide

Query:  MVIPLNSSENPVETVSKEIMCVLEKYRDVIPDSLPKSLPPRRMIDHEIELVSGAKP-----YRMVPPELAELRKQLDQLLNVGFIRHAKAPYGALVLF-R
        M IPL SSEN  ETV KEIM VLEKYRDV+PDSLPKSLPPRRMIDHEIELV GAKP     YRM PPELAELRKQLD+LLN GFIR AKAPYGA VLF R
Subjt:  MVIPLNSSENPVETVSKEIMCVLEKYRDVIPDSLPKSLPPRRMIDHEIELVSGAKP-----YRMVPPELAELRKQLDQLLNVGFIRHAKAPYGALVLF-R

Query:  KKDESLRLCIDYRAMNK------------------AHGSQ---QLDLRSGYYQVRIAERDEPKTTCVTRYSAFEFLVMPFGLTNAPTTFCTLMNQVFHEY
        KKD SLRLCIDYRA+NK                   HG++   +LDLRSGYYQVRIAE DEPKTTCVTRY AFEFLVMPFGLTNAP TFCTLMNQVFHEY
Subjt:  KKDESLRLCIDYRAMNK------------------AHGSQ---QLDLRSGYYQVRIAERDEPKTTCVTRYSAFEFLVMPFGLTNAPTTFCTLMNQVFHEY

Query:  LEKFVVVYLDDIVVYITTMEEYRDHLQKVFQKLKENQLYVKREKCSFTQERINFLGHVIECGRIGMEEGKIAAIRD
        L+KFVVVYLDDIVVY TTMEE+RDHLQKVFQKLKENQLYVKREKCSF QERINFLGHVIECGRIGMEEGKIAAIRD
Subjt:  LEKFVVVYLDDIVVYITTMEEYRDHLQKVFQKLKENQLYVKREKCSFTQERINFLGHVIECGRIGMEEGKIAAIRD

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

4.4e-26

Show/hide

Query:  SSENPVETVSK--EIMCVLEKYRDVIPDSLPKSLP-PRRMIDHEIELVS-----GAKPYRMVPPELAELRKQLDQLLNVGFIRHAKAPYGALVLF-RKKD
        S  N V  + K  E+  + ++++D+  ++  + LP P + ++ E+EL         + Y + P ++  +  +++Q L  G IR +KA     V+F  KK+
Subjt:  SSENPVETVSK--EIMCVLEKYRDVIPDSLPKSLP-PRRMIDHEIELVS-----GAKPYRMVPPELAELRKQLDQLLNVGFIRHAKAPYGALVLF-RKKD

Query:  ESLRLCIDYRAMN------------------KAHGS---QQLDLRSGYYQVRIAERDEPKTTCVTRYSAFEFLVMPFGLTNAPTTFCTLMNQVFHEYLEK
         +LR+ +DY+ +N                  K  GS    +LDL+S Y+ +R+ + DE K         FE+LVMP+G++ AP  F   +N +  E  E 
Subjt:  ESLRLCIDYRAMN------------------KAHGS---QQLDLRSGYYQVRIAERDEPKTTCVTRYSAFEFLVMPFGLTNAPTTFCTLMNQVFHEYLEK

Query:  FVVVYLDDIVVYITTMEEYRDHLQKVFQKLKENQLYVKREKCSFTQERINFLG-HVIECG
         VV Y+DDI+++  +  E+  H++ V QKLK   L + + KC F Q ++ F+G H+ E G
Subjt:  FVVVYLDDIVVYITTMEEYRDHLQKVFQKLKENQLYVKREKCSFTQERINFLG-HVIECG

P0CT41 Transposon Tf2-12 polyprotein

4.4e-26

Show/hide

Query:  SSENPVETVSK--EIMCVLEKYRDVIPDSLPKSLP-PRRMIDHEIELVS-----GAKPYRMVPPELAELRKQLDQLLNVGFIRHAKAPYGALVLF-RKKD
        S  N V  + K  E+  + ++++D+  ++  + LP P + ++ E+EL         + Y + P ++  +  +++Q L  G IR +KA     V+F  KK+
Subjt:  SSENPVETVSK--EIMCVLEKYRDVIPDSLPKSLP-PRRMIDHEIELVS-----GAKPYRMVPPELAELRKQLDQLLNVGFIRHAKAPYGALVLF-RKKD

Query:  ESLRLCIDYRAMN------------------KAHGS---QQLDLRSGYYQVRIAERDEPKTTCVTRYSAFEFLVMPFGLTNAPTTFCTLMNQVFHEYLEK
         +LR+ +DY+ +N                  K  GS    +LDL+S Y+ +R+ + DE K         FE+LVMP+G++ AP  F   +N +  E  E 
Subjt:  ESLRLCIDYRAMN------------------KAHGS---QQLDLRSGYYQVRIAERDEPKTTCVTRYSAFEFLVMPFGLTNAPTTFCTLMNQVFHEYLEK

Query:  FVVVYLDDIVVYITTMEEYRDHLQKVFQKLKENQLYVKREKCSFTQERINFLG-HVIECG
         VV Y+DDI+++  +  E+  H++ V QKLK   L + + KC F Q ++ F+G H+ E G
Subjt:  FVVVYLDDIVVYITTMEEYRDHLQKVFQKLKENQLYVKREKCSFTQERINFLG-HVIECG

P31843 RNA-directed DNA polymerase homolog

7.3e-29

53.38

Show/hide

Query:  SLRLCIDYRAMNK---------------------AHGSQQLDLRSGYYQVRIAERDEPKTTCVTRYSAFEFLVMPFGLTNAPTTFCTLMNQVFHEYLEKF
        SLR+CIDYRA+ K                     A    +LDLRSGY+QVRIA+ DEPKTTCVTRY +FEF VMPFGLTNA  TFC LMN V +EYL+ F
Subjt:  SLRLCIDYRAMNK---------------------AHGSQQLDLRSGYYQVRIAERDEPKTTCVTRYSAFEFLVMPFGLTNAPTTFCTLMNQVFHEYLEKF

Query:  VVVYLDDIVVYITTMEEYRDHLQ--KVFQKLKE
        VVVYLDD+VVY        +H++  +V ++ KE
Subjt:  VVVYLDDIVVYITTMEEYRDHLQ--KVFQKLKE

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

7.3e-37

36.33

Show/hide

Query:  NPVETVSKEIMCVL-----EKYRDVIPDSLP------KSLPPRRMIDHEIELVSGAK-----PYRMVPPELAELRKQLDQLLNVGFIRHAKAPYGA-LVL
        N  +  +K+  C L     +KYR++I + LP       ++P    + H+IE+  GA+     PY +      E+ K + +LL+  FI  +K+P  + +VL
Subjt:  NPVETVSKEIMCVL-----EKYRDVIPDSLP------KSLPPRRMIDHEIELVSGAK-----PYRMVPPELAELRKQLDQLLNVGFIRHAKAPYGA-LVL

Query:  FRKKDESLRLCIDYRAMNKAH-----------------GSQQ----LDLRSGYYQVRIAERDEPKTTCVTRYSAFEFLVMPFGLTNAPTTFCTLMNQVFH
          KKD + RLC+DYR +NKA                  G+ Q    LDL SGY+Q+ +  +D  KT  VT    +E+ VMPFGL NAP+TF   M   F 
Subjt:  FRKKDESLRLCIDYRAMNKAH-----------------GSQQ----LDLRSGYYQVRIAERDEPKTTCVTRYSAFEFLVMPFGLTNAPTTFCTLMNQVFH

Query:  EYLEKFVVVYLDDIVVYITTMEEYRDHLQKVFQKLKENQLYVKREKCSFTQERINFLGHVIECGRIGMEEGKIAAIRD
        +   +FV VYLDDI+++  + EE+  HL  V ++LK   L VK++KC F  E   FLG+ I   +I   + K AAIRD
Subjt:  EYLEKFVVVYLDDIVVYITTMEEYRDHLQKVFQKLKENQLYVKREKCSFTQERINFLGHVIECGRIGMEEGKIAAIRD

Q99315 Transposon Ty3-G Gag-Pol polyprotein

7.3e-37

36.33

Show/hide

Query:  NPVETVSKEIMCVL-----EKYRDVIPDSLP------KSLPPRRMIDHEIELVSGAK-----PYRMVPPELAELRKQLDQLLNVGFIRHAKAPYGA-LVL
        N  +  +K+  C L     +KYR++I + LP       ++P    + H+IE+  GA+     PY +      E+ K + +LL+  FI  +K+P  + +VL
Subjt:  NPVETVSKEIMCVL-----EKYRDVIPDSLP------KSLPPRRMIDHEIELVSGAK-----PYRMVPPELAELRKQLDQLLNVGFIRHAKAPYGA-LVL

Query:  FRKKDESLRLCIDYRAMNKAH-----------------GSQQ----LDLRSGYYQVRIAERDEPKTTCVTRYSAFEFLVMPFGLTNAPTTFCTLMNQVFH
          KKD + RLC+DYR +NKA                  G+ Q    LDL SGY+Q+ +  +D  KT  VT    +E+ VMPFGL NAP+TF   M   F 
Subjt:  FRKKDESLRLCIDYRAMNKAH-----------------GSQQ----LDLRSGYYQVRIAERDEPKTTCVTRYSAFEFLVMPFGLTNAPTTFCTLMNQVFH

Query:  EYLEKFVVVYLDDIVVYITTMEEYRDHLQKVFQKLKENQLYVKREKCSFTQERINFLGHVIECGRIGMEEGKIAAIRD
        +   +FV VYLDDI+++  + EE+  HL  V ++LK   L VK++KC F  E   FLG+ I   +I   + K AAIRD
Subjt:  EYLEKFVVVYLDDIVVYITTMEEYRDHLQKVFQKLKENQLYVKREKCSFTQERINFLGHVIECGRIGMEEGKIAAIRD

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGTCATCCCACTCAATTCATCAGAGAACCCAGTGGAGACAGTCTCTAAGGAGATTATGTGCGTGTTAGAGAAGTATCGTGATGTGATACCCGATAGTTTACCCAAGTC
TTTGCCACCTCGGAGAATGATTGATCATGAGATCGAGTTAGTGTCAGGGGCAAAACCTTATCGTATGGTGCCTCCGGAGTTAGCTGAACTTCGGAAACAGTTAGATCAGT
TACTGAATGTAGGGTTTATTAGGCATGCAAAAGCTCCGTATGGGGCCCTAGTTCTGTTCCGGAAGAAGGATGAGAGTTTACGATTGTGCATCGATTATCGTGCCATGAAT
AAAGCTCACGGTTCGCAACAATTGGACTTGCGATCAGGATACTACCAAGTGAGAATTGCAGAGCGAGATGAGCCGAAGACAACCTGTGTCACCCGATATAGTGCGTTTGA
ATTCCTCGTAATGCCATTTGGTCTCACCAATGCCCCTACAACCTTCTGTACGTTGATGAACCAGGTCTTCCACGAATATCTCGAAAAATTCGTAGTAGTCTACCTGGATG
ATATAGTGGTATATATTACGACCATGGAGGAATATAGAGACCATTTGCAAAAGGTTTTTCAGAAATTAAAGGAGAATCAACTATATGTCAAAAGAGAAAAATGTTCTTTT
ACACAAGAGCGGATAAACTTCTTGGGCCATGTGATAGAGTGTGGCCGAATTGGGATGGAAGAAGGGAAGATTGCTGCGATACGCGACTGA

mRNA sequence

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Protein sequence

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MVIPLNSSENPVETVSKEIMCVLEKYRDVIPDSLPKSLPPRRMIDHEIELVSGAKPYRMVPPELAELRKQLDQLLNVGFIRHAKAPYGALVLFRKKDESLRLCIDYRAMN
KAHGSQQLDLRSGYYQVRIAERDEPKTTCVTRYSAFEFLVMPFGLTNAPTTFCTLMNQVFHEYLEKFVVVYLDDIVVYITTMEEYRDHLQKVFQKLKENQLYVKREKCSF
TQERINFLGHVIECGRIGMEEGKIAAIRD

Cmc10g0268111 (gene) of Melon (Charmono) v1.1 genome