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Cmc10g0280201 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc10g0280201
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr10:17706931..17707317
RNA-Seq ExpressionCmc10g0280201
SyntenyCmc10g0280201
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035531.1 uncharacterized protein E6C27_scaffold285G001970 [Cucumis melo var. makuwa]1.9e-5483.59Show/hide
Query:  MLFGHTNASATFCTLMNQVFHEYLDKFVVVYLDDIVVYSSTIEEHKDHLRNVFQKLKKNQLYVKREKCSFVQERINFLGHVIECGRIGMEEGKIATICDW
        M FG TNA ATFCTLMNQVFHEYLDKFVVVYLDDIVVYS+T+EEH+DHL+ VFQKLK+NQLYVKREKCSF QERINFLGHVIECGRIGMEEGKIA I DW
Subjt:  MLFGHTNASATFCTLMNQVFHEYLDKFVVVYLDDIVVYSSTIEEHKDHLRNVFQKLKKNQLYVKREKCSFVQERINFLGHVIECGRIGMEEGKIATICDW

Query:  VIPKLVSKLCSFFRLANYYRQFIEGFSK
         +PK VS+L SF  LANYYR+F+EGFSK
Subjt:  VIPKLVSKLCSFFRLANYYRQFIEGFSK

KAA0042379.1 reverse transcriptase [Cucumis melo var. makuwa]2.3e-5583.59Show/hide
Query:  MLFGHTNASATFCTLMNQVFHEYLDKFVVVYLDDIVVYSSTIEEHKDHLRNVFQKLKKNQLYVKREKCSFVQERINFLGHVIECGRIGMEEGKIATICDW
        M FG TNASATFCTLMNQVFHEYLDKFVVVYLDDIVVYS+T+EEH+DHL+ VFQKLK+NQLYVKREKC F QE+INFLGHVIECGRIGMEEGKIA I DW
Subjt:  MLFGHTNASATFCTLMNQVFHEYLDKFVVVYLDDIVVYSSTIEEHKDHLRNVFQKLKKNQLYVKREKCSFVQERINFLGHVIECGRIGMEEGKIATICDW

Query:  VIPKLVSKLCSFFRLANYYRQFIEGFSK
         +PK VS+LCSF RLANYYR+F++GFSK
Subjt:  VIPKLVSKLCSFFRLANYYRQFIEGFSK

KAA0057285.1 uncharacterized protein E6C27_scaffold280G001260 [Cucumis melo var. makuwa]6.6e-5584.38Show/hide
Query:  MLFGHTNASATFCTLMNQVFHEYLDKFVVVYLDDIVVYSSTIEEHKDHLRNVFQKLKKNQLYVKREKCSFVQERINFLGHVIECGRIGMEEGKIATICDW
        M FG TNA ATFCT+MNQVFHEYLDKFVVVYLDDIVVYS+T+EEH+DHL+ VFQKLK+NQLYVKREKCSF QERINFLGHVIECGRIGMEEGKIA I DW
Subjt:  MLFGHTNASATFCTLMNQVFHEYLDKFVVVYLDDIVVYSSTIEEHKDHLRNVFQKLKKNQLYVKREKCSFVQERINFLGHVIECGRIGMEEGKIATICDW

Query:  VIPKLVSKLCSFFRLANYYRQFIEGFSK
         +PK VS+L SF RLANYYR+FIEGFSK
Subjt:  VIPKLVSKLCSFFRLANYYRQFIEGFSK

KAA0059106.1 reverse transcriptase [Cucumis melo var. makuwa]2.5e-5483.59Show/hide
Query:  MLFGHTNASATFCTLMNQVFHEYLDKFVVVYLDDIVVYSSTIEEHKDHLRNVFQKLKKNQLYVKREKCSFVQERINFLGHVIECGRIGMEEGKIATICDW
        M FG TNA ATFCTLMNQVFHEYLDKFVVVYLDDIVVYS+T+EEH+DHL+ VFQKLK+NQLYVKREKCSF QERINFLGHVIECGRIGMEEGKIA I DW
Subjt:  MLFGHTNASATFCTLMNQVFHEYLDKFVVVYLDDIVVYSSTIEEHKDHLRNVFQKLKKNQLYVKREKCSFVQERINFLGHVIECGRIGMEEGKIATICDW

Query:  VIPKLVSKLCSFFRLANYYRQFIEGFSK
         +PK VS+L SF RLANYYR+F+EGF K
Subjt:  VIPKLVSKLCSFFRLANYYRQFIEGFSK

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]3.3e-5483.59Show/hide
Query:  MLFGHTNASATFCTLMNQVFHEYLDKFVVVYLDDIVVYSSTIEEHKDHLRNVFQKLKKNQLYVKREKCSFVQERINFLGHVIECGRIGMEEGKIATICDW
        M FG TNA ATFCTLMNQVFHEYLDKFVVVYLDDIVVYS+T+EEH+DHL+ VFQKLK+NQLYVKREKCSF QERINFLGHVIECGRIGMEEGKIA I DW
Subjt:  MLFGHTNASATFCTLMNQVFHEYLDKFVVVYLDDIVVYSSTIEEHKDHLRNVFQKLKKNQLYVKREKCSFVQERINFLGHVIECGRIGMEEGKIATICDW

Query:  VIPKLVSKLCSFFRLANYYRQFIEGFSK
         +PK VS+L SF  LANYYR+F+EGFSK
Subjt:  VIPKLVSKLCSFFRLANYYRQFIEGFSK

TrEMBL top hitse value%identityAlignment
A0A5A7T1S6 Reverse transcriptase domain-containing protein9.2e-5583.59Show/hide
Query:  MLFGHTNASATFCTLMNQVFHEYLDKFVVVYLDDIVVYSSTIEEHKDHLRNVFQKLKKNQLYVKREKCSFVQERINFLGHVIECGRIGMEEGKIATICDW
        M FG TNA ATFCTLMNQVFHEYLDKFVVVYLDDIVVYS+T+EEH+DHL+ VFQKLK+NQLYVKREKCSF QERINFLGHVIECGRIGMEEGKIA I DW
Subjt:  MLFGHTNASATFCTLMNQVFHEYLDKFVVVYLDDIVVYSSTIEEHKDHLRNVFQKLKKNQLYVKREKCSFVQERINFLGHVIECGRIGMEEGKIATICDW

Query:  VIPKLVSKLCSFFRLANYYRQFIEGFSK
         +PK VS+L SF  LANYYR+F+EGFSK
Subjt:  VIPKLVSKLCSFFRLANYYRQFIEGFSK

A0A5A7UUR0 Reverse transcriptase domain-containing protein3.2e-5584.38Show/hide
Query:  MLFGHTNASATFCTLMNQVFHEYLDKFVVVYLDDIVVYSSTIEEHKDHLRNVFQKLKKNQLYVKREKCSFVQERINFLGHVIECGRIGMEEGKIATICDW
        M FG TNA ATFCT+MNQVFHEYLDKFVVVYLDDIVVYS+T+EEH+DHL+ VFQKLK+NQLYVKREKCSF QERINFLGHVIECGRIGMEEGKIA I DW
Subjt:  MLFGHTNASATFCTLMNQVFHEYLDKFVVVYLDDIVVYSSTIEEHKDHLRNVFQKLKKNQLYVKREKCSFVQERINFLGHVIECGRIGMEEGKIATICDW

Query:  VIPKLVSKLCSFFRLANYYRQFIEGFSK
         +PK VS+L SF RLANYYR+FIEGFSK
Subjt:  VIPKLVSKLCSFFRLANYYRQFIEGFSK

A0A5A7UY33 Reverse transcriptase1.2e-5483.59Show/hide
Query:  MLFGHTNASATFCTLMNQVFHEYLDKFVVVYLDDIVVYSSTIEEHKDHLRNVFQKLKKNQLYVKREKCSFVQERINFLGHVIECGRIGMEEGKIATICDW
        M FG TNA ATFCTLMNQVFHEYLDKFVVVYLDDIVVYS+T+EEH+DHL+ VFQKLK+NQLYVKREKCSF QERINFLGHVIECGRIGMEEGKIA I DW
Subjt:  MLFGHTNASATFCTLMNQVFHEYLDKFVVVYLDDIVVYSSTIEEHKDHLRNVFQKLKKNQLYVKREKCSFVQERINFLGHVIECGRIGMEEGKIATICDW

Query:  VIPKLVSKLCSFFRLANYYRQFIEGFSK
         +PK VS+L SF RLANYYR+F+EGF K
Subjt:  VIPKLVSKLCSFFRLANYYRQFIEGFSK

A0A5D3C4R1 Reverse transcriptase1.6e-5483.59Show/hide
Query:  MLFGHTNASATFCTLMNQVFHEYLDKFVVVYLDDIVVYSSTIEEHKDHLRNVFQKLKKNQLYVKREKCSFVQERINFLGHVIECGRIGMEEGKIATICDW
        M FG TNA ATFCTLMNQVFHEYLDKFVVVYLDDIVVYS+T+EEH+DHL+ VFQKLK+NQLYVKREKCSF QERINFLGHVIECGRIGMEEGKIA I DW
Subjt:  MLFGHTNASATFCTLMNQVFHEYLDKFVVVYLDDIVVYSSTIEEHKDHLRNVFQKLKKNQLYVKREKCSFVQERINFLGHVIECGRIGMEEGKIATICDW

Query:  VIPKLVSKLCSFFRLANYYRQFIEGFSK
         +PK VS+L SF  LANYYR+F+EGFSK
Subjt:  VIPKLVSKLCSFFRLANYYRQFIEGFSK

A0A5D3CW71 Reverse transcriptase1.1e-5583.59Show/hide
Query:  MLFGHTNASATFCTLMNQVFHEYLDKFVVVYLDDIVVYSSTIEEHKDHLRNVFQKLKKNQLYVKREKCSFVQERINFLGHVIECGRIGMEEGKIATICDW
        M FG TNASATFCTLMNQVFHEYLDKFVVVYLDDIVVYS+T+EEH+DHL+ VFQKLK+NQLYVKREKC F QE+INFLGHVIECGRIGMEEGKIA I DW
Subjt:  MLFGHTNASATFCTLMNQVFHEYLDKFVVVYLDDIVVYSSTIEEHKDHLRNVFQKLKKNQLYVKREKCSFVQERINFLGHVIECGRIGMEEGKIATICDW

Query:  VIPKLVSKLCSFFRLANYYRQFIEGFSK
         +PK VS+LCSF RLANYYR+F++GFSK
Subjt:  VIPKLVSKLCSFFRLANYYRQFIEGFSK

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.63.5e-1940.16Show/hide
Query:  MLFGHTNASATFCTLMNQVFHEYLDKFVVVYLDDIVVYSSTIEEHKDHLRNVFQKLKKNQLYVKREKCSFVQERINFLGHVIECGRIGMEEGKIATICDW
        M FG  NA ATF   MN +    L+K  +VYLDDI+V+S++++EH   L  VF+KL K  L ++ +KC F+++   FLGHV+    I     KI  I  +
Subjt:  MLFGHTNASATFCTLMNQVFHEYLDKFVVVYLDDIVVYSSTIEEHKDHLRNVFQKLKKNQLYVKREKCSFVQERINFLGHVIECGRIGMEEGKIATICDW

Query:  VIPKLVSKLCSFFRLANYYRQFIEGFS
         IP    ++ +F  L  YYR+FI  F+
Subjt:  VIPKLVSKLCSFFRLANYYRQFIEGFS

P20825 Retrovirus-related Pol polyprotein from transposon 2975.1e-1836.22Show/hide
Query:  MLFGHTNASATFCTLMNQVFHEYLDKFVVVYLDDIVVYSSTIEEHKDHLRNVFQKLKKNQLYVKREKCSFVQERINFLGHVIECGRIGMEEGKIATICDW
        M FG  NA ATF   MN +    L+K  +VYLDDI+++S+++ EH + ++ VF KL    L ++ +KC F+++  NFLGH++    I     K+  I  +
Subjt:  MLFGHTNASATFCTLMNQVFHEYLDKFVVVYLDDIVVYSSTIEEHKDHLRNVFQKLKKNQLYVKREKCSFVQERINFLGHVIECGRIGMEEGKIATICDW

Query:  VIPKLVSKLCSFFRLANYYRQFIEGFS
         IP    ++ +F  L  YYR+FI  ++
Subjt:  VIPKLVSKLCSFFRLANYYRQFIEGFS

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein1.2e-1942.19Show/hide
Query:  MLFGHTNASATFCTLMNQVFHEYLDKFVVVYLDDIVVYSSTIEEHKDHLRNVFQKLKKNQLYVKREKCSFVQERINFLGHVIECGRIGMEEGKIATICDW
        M FG  NA +TF   M   F +   +FV VYLDDI+++S + EEH  HL  V ++LK   L VK++KC F  E   FLG+ I   +I   + K A I D+
Subjt:  MLFGHTNASATFCTLMNQVFHEYLDKFVVVYLDDIVVYSSTIEEHKDHLRNVFQKLKKNQLYVKREKCSFVQERINFLGHVIECGRIGMEEGKIATICDW

Query:  VIPKLVSKLCSFFRLANYYRQFIEGFSK
          PK V +   F  + NYYR+FI   SK
Subjt:  VIPKLVSKLCSFFRLANYYRQFIEGFSK

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus1.8e-1533.33Show/hide
Query:  FGHTNASATFCTLMNQVFHEYLDKFVVVYLDDIVVYSSTIEEHKDHLRNVFQKLKKNQLYVKREKCSFVQERINFLGHVIECGRIGMEEGKIATICDWVI
        FG  NA A F  +++ +  E++ K   VY+DDI+V+S   + H  +LR V   L K  L V  EK  F+  ++ FLG+++    I  +  K+  I +   
Subjt:  FGHTNASATFCTLMNQVFHEYLDKFVVVYLDDIVVYSSTIEEHKDHLRNVFQKLKKNQLYVKREKCSFVQERINFLGHVIECGRIGMEEGKIATICDWVI

Query:  PKLVSKLCSFFRLANYYRQFIEGFSK
        P  V +L  F  + +YYR+FI+ ++K
Subjt:  PKLVSKLCSFFRLANYYRQFIEGFSK

Q99315 Transposon Ty3-G Gag-Pol polyprotein1.2e-1942.19Show/hide
Query:  MLFGHTNASATFCTLMNQVFHEYLDKFVVVYLDDIVVYSSTIEEHKDHLRNVFQKLKKNQLYVKREKCSFVQERINFLGHVIECGRIGMEEGKIATICDW
        M FG  NA +TF   M   F +   +FV VYLDDI+++S + EEH  HL  V ++LK   L VK++KC F  E   FLG+ I   +I   + K A I D+
Subjt:  MLFGHTNASATFCTLMNQVFHEYLDKFVVVYLDDIVVYSSTIEEHKDHLRNVFQKLKKNQLYVKREKCSFVQERINFLGHVIECGRIGMEEGKIATICDW

Query:  VIPKLVSKLCSFFRLANYYRQFIEGFSK
          PK V +   F  + NYYR+FI   SK
Subjt:  VIPKLVSKLCSFFRLANYYRQFIEGFSK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTATTCGGTCATACCAATGCCTCTGCAACCTTTTGTACATTGATGAACCAAGTCTTCCATGAATATCTTGACAAGTTTGTAGTGGTCTACCTAGATGACATAGTGGT
ATATAGCTCGACCATAGAGGAACACAAGGATCACCTTCGAAATGTTTTTCAGAAATTGAAGAAGAATCAATTGTATGTCAAGAGAGAAAAATGTTCCTTTGTGCAAGAAC
GGATAAACTTCTTGGGCCATGTGATAGAGTGTGGCCGAATTGGGATGGAAGAAGGAAAGATTGCTACAATATGTGATTGGGTAATACCAAAATTAGTCTCGAAATTATGC
TCTTTCTTCAGGTTAGCAAATTATTACAGGCAATTTATTGAGGGATTCTCCAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCTATTCGGTCATACCAATGCCTCTGCAACCTTTTGTACATTGATGAACCAAGTCTTCCATGAATATCTTGACAAGTTTGTAGTGGTCTACCTAGATGACATAGTGGT
ATATAGCTCGACCATAGAGGAACACAAGGATCACCTTCGAAATGTTTTTCAGAAATTGAAGAAGAATCAATTGTATGTCAAGAGAGAAAAATGTTCCTTTGTGCAAGAAC
GGATAAACTTCTTGGGCCATGTGATAGAGTGTGGCCGAATTGGGATGGAAGAAGGAAAGATTGCTACAATATGTGATTGGGTAATACCAAAATTAGTCTCGAAATTATGC
TCTTTCTTCAGGTTAGCAAATTATTACAGGCAATTTATTGAGGGATTCTCCAAATGA
Protein sequenceShow/hide protein sequence
MLFGHTNASATFCTLMNQVFHEYLDKFVVVYLDDIVVYSSTIEEHKDHLRNVFQKLKKNQLYVKREKCSFVQERINFLGHVIECGRIGMEEGKIATICDWVIPKLVSKLC
SFFRLANYYRQFIEGFSK