CuGenDBv2

Gene ID	Cmc10g0280231
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Integrase catalytic domain-containing protein
Genome location	CMiso1.1chr10:17776750..17777061
RNA-Seq Expression	Cmc10g0280231
Synteny	Cmc10g0280231
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

CAA7051267.1 unnamed protein product [Microthlaspi erraticum]

1.5e-25

52.43

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Query:  MSLIFHSSVPLEFFPYAFSTAVFLINRMPSSSLKMLSPFEMLFGYTPDLHHLEVFGCACYPLLKPYTKHKLEPKTTQHVFLGYPHNFKAYICYNPLTKQT
        +SL+ H+ +P  F+ YAFSTAV+LINRMP+ +L + SPF M+FG+ P+   L++FGC C+P L+PY  HKLEP++T  VFLGY     AY+C++PLT + 
Subjt:  MSLIFHSSVPLEFFPYAFSTAVFLINRMPSSSLKMLSPFEMLFGYTPDLHHLEVFGCACYPLLKPYTKHKLEPKTTQHVFLGYPHNFKAYICYNPLTKQT

Query:  IVS
         VS
Subjt:  IVS

OMO55025.1 Integrase, catalytic core [Corchorus capsularis]

1.8e-23

50.49

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Query:  MSLIFHSSVPLEFFPYAFSTAVFLINRMPSSSLKMLSPFEMLFGYTPDLHHLEVFGCACYPLLKPYTKHKLEPKTTQHVFLGYPHNFKAYICYNPLTKQT
        ++L+ ++S+PL+++PYA +TAV+L+NR+P+  LK  SPF +LF   P+L  L+VFG  CYP LKPYT+HK+EPK+   VFLGY  N  AY+C +P++++ 
Subjt:  MSLIFHSSVPLEFFPYAFSTAVFLINRMPSSSLKMLSPFEMLFGYTPDLHHLEVFGCACYPLLKPYTKHKLEPKTTQHVFLGYPHNFKAYICYNPLTKQT

Query:  IVS
         VS
Subjt:  IVS

PKI52922.1 hypothetical protein CRG98_026753 [Punica granatum]

2.4e-23

50.49

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Query:  MSLIFHSSVPLEFFPYAFSTAVFLINRMPSSSLKMLSPFEMLFGYTPDLHHLEVFGCACYPLLKPYTKHKLEPKTTQHVFLGYPHNFKAYICYNPLTKQT
        ++L+FHSS   +F+ YAF TAV+LINR+P+ SL   SP E+L G+ P+  +L VFGC  YP L+PYT+HKLEP++   VF GYP++++ Y C NP T + 
Subjt:  MSLIFHSSVPLEFFPYAFSTAVFLINRMPSSSLKMLSPFEMLFGYTPDLHHLEVFGCACYPLLKPYTKHKLEPKTTQHVFLGYPHNFKAYICYNPLTKQT

Query:  IVS
         +S
Subjt:  IVS

TKR89925.1 hypothetical protein D5086_0000238180 [Populus alba]

2.8e-24

50.49

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Query:  MSLIFHSSVPLEFFPYAFSTAVFLINRMPSSSLKMLSPFEMLFGYTPDLHHLEVFGCACYPLLKPYTKHKLEPKTTQHVFLGYPHNFKAYICYNPLTKQT
        ++L+ H+S+PL F+P+AF+TAV+LINRMP+ +L + SP+E +FG  P+   L+VF C CYP L+PYT HKLEP++   +F GY     AY+CY+P T + 
Subjt:  MSLIFHSSVPLEFFPYAFSTAVFLINRMPSSSLKMLSPFEMLFGYTPDLHHLEVFGCACYPLLKPYTKHKLEPKTTQHVFLGYPHNFKAYICYNPLTKQT

Query:  IVS
         VS
Subjt:  IVS

TQD93593.1 hypothetical protein C1H46_020801 [Malus baccata]

2.4e-23

51.46

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Query:  MSLIFHSSVPLEFFPYAFSTAVFLINRMPSSSLKMLSPFEMLFGYTPDLHHLEVFGCACYPLLKPYTKHKLEPKTTQHVFLGYPHNFKAYICYNPLTKQT
        ++L+  + +P +F+ +A +TAV+LINRMP+  L M SPFE+L+  +P L HL++FGCACYP LKPY  HKL PKT++ +FLGY   +K +IC+NP   + 
Subjt:  MSLIFHSSVPLEFFPYAFSTAVFLINRMPSSSLKMLSPFEMLFGYTPDLHHLEVFGCACYPLLKPYTKHKLEPKTTQHVFLGYPHNFKAYICYNPLTKQT

Query:  IVS
        IVS
Subjt:  IVS

TrEMBL top hits

e value

%identity

Alignment

A0A2N9EUP4 Integrase catalytic domain-containing protein

4.2e-26

60.64

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Query:  MSLIFHSSVPLEFFPYAFSTAVFLINRMPSSSLKMLSPFEMLFGYTPDLHHLEVFGCACYPLLKPYTKHKLEPKTTQHVFLGYPHNFKAYICYN
        ++LI  SS+PL F+PYAFSTAVFLINR+PS S +++SP+E LFG TPD     VFGC CYPLL+PY+KHKL+P++   VFLGY  N K ++CY+
Subjt:  MSLIFHSSVPLEFFPYAFSTAVFLINRMPSSSLKMLSPFEMLFGYTPDLHHLEVFGCACYPLLKPYTKHKLEPKTTQHVFLGYPHNFKAYICYN

A0A2N9G1Z9 Integrase catalytic domain-containing protein

4.2e-26

60.64

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Query:  MSLIFHSSVPLEFFPYAFSTAVFLINRMPSSSLKMLSPFEMLFGYTPDLHHLEVFGCACYPLLKPYTKHKLEPKTTQHVFLGYPHNFKAYICYN
        ++LI  SS+PL F+PYAFSTAVFLINR+PS S +++SP+E LFG TPD     VFGC CYPLL+PY+KHKL+P++   VFLGY  N K ++CY+
Subjt:  MSLIFHSSVPLEFFPYAFSTAVFLINRMPSSSLKMLSPFEMLFGYTPDLHHLEVFGCACYPLLKPYTKHKLEPKTTQHVFLGYPHNFKAYICYN

A0A2N9H1I5 Integrase catalytic domain-containing protein

5.0e-27

57.28

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Query:  MSLIFHSSVPLEFFPYAFSTAVFLINRMPSSSLKMLSPFEMLFGYTPDLHHLEVFGCACYPLLKPYTKHKLEPKTTQHVFLGYPHNFKAYICYNPLTKQT
        ++LI  +S+PL F+PYAFSTAVFLINR+PS     +SP++ LFG +PD   +  FGCACYPLL+PY+ HKL P++TQ VFLGYP N K ++CY P +K+ 
Subjt:  MSLIFHSSVPLEFFPYAFSTAVFLINRMPSSSLKMLSPFEMLFGYTPDLHHLEVFGCACYPLLKPYTKHKLEPKTTQHVFLGYPHNFKAYICYNPLTKQT

Query:  IVS
         VS
Subjt:  IVS

A0A2N9HPM6 Integrase catalytic domain-containing protein

5.0e-27

57.28

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Query:  MSLIFHSSVPLEFFPYAFSTAVFLINRMPSSSLKMLSPFEMLFGYTPDLHHLEVFGCACYPLLKPYTKHKLEPKTTQHVFLGYPHNFKAYICYNPLTKQT
        ++LI  +S+PL F+PYAFSTAVFLINR+PS     +SP++ LFG +PD   +  FGCACYPLL+PY+ HKL P++TQ VFLGYP N K ++CY P +K+ 
Subjt:  MSLIFHSSVPLEFFPYAFSTAVFLINRMPSSSLKMLSPFEMLFGYTPDLHHLEVFGCACYPLLKPYTKHKLEPKTTQHVFLGYPHNFKAYICYNPLTKQT

Query:  IVS
         VS
Subjt:  IVS

A0A2N9I1C1 Integrase catalytic domain-containing protein

5.0e-27

57.28

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Query:  MSLIFHSSVPLEFFPYAFSTAVFLINRMPSSSLKMLSPFEMLFGYTPDLHHLEVFGCACYPLLKPYTKHKLEPKTTQHVFLGYPHNFKAYICYNPLTKQT
        ++LI  +S+PL F+PYAFSTAVFLINR+PS     +SP++ LFG +PD   +  FGCACYPLL+PY+ HKL P++TQ VFLGYP N K ++CY P +K+ 
Subjt:  MSLIFHSSVPLEFFPYAFSTAVFLINRMPSSSLKMLSPFEMLFGYTPDLHHLEVFGCACYPLLKPYTKHKLEPKTTQHVFLGYPHNFKAYICYNPLTKQT

Query:  IVS
         VS
Subjt:  IVS

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

1.4e-05

33.33

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Query:  SLIFHSSVPLEFFPYAFSTAVFLINRMPSSSL--KMLSPFEMLFGYTPDLHHLEVFGCACYPLLKPYTKHKLEPKTTQHVFLGY-PHNFKAYICYN
        +++  + +   F+  A  TA +LINR+PS +L     +P+EM     P L HL VFG   Y  +K   + K + K+ + +F+GY P+ FK +   N
Subjt:  SLIFHSSVPLEFFPYAFSTAVFLINRMPSSSL--KMLSPFEMLFGYTPDLHHLEVFGCACYPLLKPYTKHKLEPKTTQHVFLGY-PHNFKAYICYN

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

1.3e-24

48.54

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Query:  MSLIFHSSVPLEFFPYAFSTAVFLINRMPSSSLKMLSPFEMLFGYTPDLHHLEVFGCACYPLLKPYTKHKLEPKTTQHVFLGYPHNFKAYICYNPLTKQT
        ++L+ H+S+P  ++PYAF+ AV+LINR+P+  L++ SPF+ LFG +P+   L VFGCACYP L+PY +HKL+ K+ Q VFLGY     AY+C +  T + 
Subjt:  MSLIFHSSVPLEFFPYAFSTAVFLINRMPSSSLKMLSPFEMLFGYTPDLHHLEVFGCACYPLLKPYTKHKLEPKTTQHVFLGYPHNFKAYICYNPLTKQT

Query:  IVS
         +S
Subjt:  IVS

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

3.8e-24

53.26

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Query:  MSLIFHSSVPLEFFPYAFSTAVFLINRMPSSSLKMLSPFEMLFGYTPDLHHLEVFGCACYPLLKPYTKHKLEPKTTQHVFLGYPHNFKAYIC
        ++L+ H+SVP  ++PYAFS AV+LINR+P+  L++ SPF+ LFG  P+   L+VFGCACYP L+PY +HKLE K+ Q  F+GY     AY+C
Subjt:  MSLIFHSSVPLEFFPYAFSTAVFLINRMPSSSLKMLSPFEMLFGYTPDLHHLEVFGCACYPLLKPYTKHKLEPKTTQHVFLGYPHNFKAYIC

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTCTCTAATTTTCCATTCCTCTGTTCCTCTTGAATTTTTTCCTTACGCCTTCTCCACTGCAGTCTTTCTTATTAATCGAATGCCCTCTTCCTCACTTAAAATGTTATC
ACCATTTGAAATGCTTTTTGGTTATACTCCTGATTTGCATCATTTAGAAGTTTTTGGATGTGCATGTTACCCCCTTCTCAAGCCTTACACCAAACACAAACTTGAACCAA
AAACCACCCAACATGTATTTTTAGGCTATCCTCATAACTTCAAAGCCTATATTTGTTACAACCCATTAACCAAACAAACTATAGTTTCATGA

mRNA sequence

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Protein sequence

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MSLIFHSSVPLEFFPYAFSTAVFLINRMPSSSLKMLSPFEMLFGYTPDLHHLEVFGCACYPLLKPYTKHKLEPKTTQHVFLGYPHNFKAYICYNPLTKQTIVS

Cmc10g0280231 (gene) of Melon (Charmono) v1.1 genome