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Cmc10g0281021 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc10g0281021
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr10:19160593..19161138
RNA-Seq ExpressionCmc10g0281021
SyntenyCmc10g0281021
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW18297.1 Transposon Ty3-G Gag-Pol polyprotein [Vitis vinifera]1.2e-5959.12Show/hide
Query:  MGFEFLKEMYENDDDFGNLFSKCVNETKINNFYVFYGFLFKKDKLCIPNGSYREFLAKEAHGGGLMGHFSKFKTYEAFKSHFYWPHMQHDVHKVCHTCIT
        +GFE++KE+Y NDDDF +++  C  +T    FY   G+LF++++LC+PN S RE L +EAHGGGLMGHF   KT +    HF+WP M+ DV + C  CIT
Subjt:  MGFEFLKEMYENDDDFGNLFSKCVNETKINNFYVFYGFLFKKDKLCIPNGSYREFLAKEAHGGGLMGHFSKFKTYEAFKSHFYWPHMQHDVHKVCHTCIT

Query:  CREVKFKCRTHGLYTPLLVPNAPWDDLSMDFILGLPRSRKEHDSIFVVVDRFSKMSHFIAFHKTDDAKNVADLFFKEVVRL
        CR+ K +   HGLYTPL VP+APW D+SMDF+LGLPRSR   DSIFVVVDRFSKM+HFI+ HKTDDA ++A+LFF+E+VRL
Subjt:  CREVKFKCRTHGLYTPLLVPNAPWDDLSMDFILGLPRSRKEHDSIFVVVDRFSKMSHFIAFHKTDDAKNVADLFFKEVVRL

RYE25342.1 hypothetical protein EOP45_04870, partial [Sphingobacteriaceae bacterium]1.9e-6060.22Show/hide
Query:  MGFEFLKEMYENDDDFGNLFSKCVNETKINNFYVFYGFLFKKDKLCIPNGSYREFLAKEAHGGGLMGHFSKFKTYEAFKSHFYWPHMQHDVHKVCHTCIT
        +GFE++KE+Y +D DFG  F  C +     NF +  GFLF+++KLCIP+ S RE L +EAH GGLMGHF   KT      HFYWPHM+ DV K+C  CIT
Subjt:  MGFEFLKEMYENDDDFGNLFSKCVNETKINNFYVFYGFLFKKDKLCIPNGSYREFLAKEAHGGGLMGHFSKFKTYEAFKSHFYWPHMQHDVHKVCHTCIT

Query:  CREVKFKCRTHGLYTPLLVPNAPWDDLSMDFILGLPRSRKEHDSIFVVVDRFSKMSHFIAFHKTDDAKNVADLFFKEVVRL
        C++ K K + HGLYTPL +P+APW D+SMDF+LGLPR+++  DS+FVVVDRFSKM+HFIA HKTD+A N+ADLFFKE+VRL
Subjt:  CREVKFKCRTHGLYTPLLVPNAPWDDLSMDFILGLPRSRKEHDSIFVVVDRFSKMSHFIAFHKTDDAKNVADLFFKEVVRL

XP_021686315.1 uncharacterized protein LOC110669123 [Hevea brasiliensis]3.0e-6162.98Show/hide
Query:  MGFEFLKEMYENDDDFGNLFSKCVNETKINNFYVFYGFLFKKDKLCIPNGSYREFLAKEAHGGGLMGHFSKFKTYEAFKSHFYWPHMQHDVHKVCHTCIT
        +GFE +KEMY NDDDFG +F+ C      + FY   GFLF+++KLC+P  S RE L KE+H GGLMGHF   KT E  K HFYWPHM+ DV +VC  C+T
Subjt:  MGFEFLKEMYENDDDFGNLFSKCVNETKINNFYVFYGFLFKKDKLCIPNGSYREFLAKEAHGGGLMGHFSKFKTYEAFKSHFYWPHMQHDVHKVCHTCIT

Query:  CREVKFKCRTHGLYTPLLVPNAPWDDLSMDFILGLPRSRKEHDSIFVVVDRFSKMSHFIAFHKTDDAKNVADLFFKEVVRL
        C + K K R HGLY PL VP+ PW DLSMDFILGLPR++K HDSIFVVVDRFSKM+HFI  HKTDDA  +A LFF+E+VRL
Subjt:  CREVKFKCRTHGLYTPLLVPNAPWDDLSMDFILGLPRSRKEHDSIFVVVDRFSKMSHFIAFHKTDDAKNVADLFFKEVVRL

XP_022157414.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 [Momordica charantia]2.8e-5960.77Show/hide
Query:  MGFEFLKEMYENDDDFGNLFSKCVNETKINNFYVFYGFLFKKDKLCIPNGSYREFLAKEAHGGGLMGHFSKFKTYEAFKSHFYWPHMQHDVHKVCHTCIT
        +GFE LK +Y +D  F +    C     ++++ +F GFLF+K KLCIP+ S RE L KEAHGGGLM HF   KTY+    HFYWP M+HDVHKVC  CI 
Subjt:  MGFEFLKEMYENDDDFGNLFSKCVNETKINNFYVFYGFLFKKDKLCIPNGSYREFLAKEAHGGGLMGHFSKFKTYEAFKSHFYWPHMQHDVHKVCHTCIT

Query:  CREVKFKCRTHGLYTPLLVPNAPWDDLSMDFILGLPRSRKEHDSIFVVVDRFSKMSHFIAFHKTDDAKNVADLFFKEVVRL
        C++ K + + HGLY+PL VP  PW D+SMDF+LGLPR+RK  DSIFVVVDRFSKM+HFI  HKTDDAK +ADLFF+EVVRL
Subjt:  CREVKFKCRTHGLYTPLLVPNAPWDDLSMDFILGLPRSRKEHDSIFVVVDRFSKMSHFIAFHKTDDAKNVADLFFKEVVRL

XP_035542994.1 uncharacterized protein LOC118346093, partial [Juglans regia]2.5e-6058.56Show/hide
Query:  MGFEFLKEMYENDDDFGNLFSKCVNETKINNFYVFYGFLFKKDKLCIPNGSYREFLAKEAHGGGLMGHFSKFKTYEAFKSHFYWPHMQHDVHKVCHTCIT
        +GFE++KE+Y  D DFG++F+ C  +     FY + GFLF+++KLC+P  S RE L +EAHGGGLMGHF   KT      HF+WPHM+ DV ++C  CIT
Subjt:  MGFEFLKEMYENDDDFGNLFSKCVNETKINNFYVFYGFLFKKDKLCIPNGSYREFLAKEAHGGGLMGHFSKFKTYEAFKSHFYWPHMQHDVHKVCHTCIT

Query:  CREVKFKCRTHGLYTPLLVPNAPWDDLSMDFILGLPRSRKEHDSIFVVVDRFSKMSHFIAFHKTDDAKNVADLFFKEVVRL
        C++ K K + HGLYTPL +P+ PW D+SMDF+LGLPR+++  DS+FVVVDRFSKM+HFIA HKTDDA ++ADLFFKE+VRL
Subjt:  CREVKFKCRTHGLYTPLLVPNAPWDDLSMDFILGLPRSRKEHDSIFVVVDRFSKMSHFIAFHKTDDAKNVADLFFKEVVRL

TrEMBL top hitse value%identityAlignment
A0A2N9EC96 Uncharacterized protein2.5e-6160.22Show/hide
Query:  MGFEFLKEMYENDDDFGNLFSKCVNETKINNFYVFYGFLFKKDKLCIPNGSYREFLAKEAHGGGLMGHFSKFKTYEAFKSHFYWPHMQHDVHKVCHTCIT
        +GFE++KE+Y NDDDF ++F+ C  +     FY   G+LF++++LC+PN S RE L +EAHGGGLMGHF   KT +    HF+WP M+ DV +VC  C+T
Subjt:  MGFEFLKEMYENDDDFGNLFSKCVNETKINNFYVFYGFLFKKDKLCIPNGSYREFLAKEAHGGGLMGHFSKFKTYEAFKSHFYWPHMQHDVHKVCHTCIT

Query:  CREVKFKCRTHGLYTPLLVPNAPWDDLSMDFILGLPRSRKEHDSIFVVVDRFSKMSHFIAFHKTDDAKNVADLFFKEVVRL
        CR+ K +   HGLYTPL VP+APW D+SMDF+LGLPRSRK  DSIFVVVDRFSKM+HFI+ HKTDDA ++ADLFF+E+VRL
Subjt:  CREVKFKCRTHGLYTPLLVPNAPWDDLSMDFILGLPRSRKEHDSIFVVVDRFSKMSHFIAFHKTDDAKNVADLFFKEVVRL

A0A2N9EXV0 Uncharacterized protein2.5e-6160.22Show/hide
Query:  MGFEFLKEMYENDDDFGNLFSKCVNETKINNFYVFYGFLFKKDKLCIPNGSYREFLAKEAHGGGLMGHFSKFKTYEAFKSHFYWPHMQHDVHKVCHTCIT
        +GFE++KE+Y NDDDF ++F+ C  +     FY   G+LF++++LC+PN S RE L +EAHGGGLMGHF   KT +    HF+WP M+ DV +VC  C+T
Subjt:  MGFEFLKEMYENDDDFGNLFSKCVNETKINNFYVFYGFLFKKDKLCIPNGSYREFLAKEAHGGGLMGHFSKFKTYEAFKSHFYWPHMQHDVHKVCHTCIT

Query:  CREVKFKCRTHGLYTPLLVPNAPWDDLSMDFILGLPRSRKEHDSIFVVVDRFSKMSHFIAFHKTDDAKNVADLFFKEVVRL
        CR+ K +   HGLYTPL VP+APW D+SMDF+LGLPRSRK  DSIFVVVDRFSKM+HFI+ HKTDDA ++ADLFF+E+VRL
Subjt:  CREVKFKCRTHGLYTPLLVPNAPWDDLSMDFILGLPRSRKEHDSIFVVVDRFSKMSHFIAFHKTDDAKNVADLFFKEVVRL

A0A2N9F7E8 Reverse transcriptase2.5e-6160.22Show/hide
Query:  MGFEFLKEMYENDDDFGNLFSKCVNETKINNFYVFYGFLFKKDKLCIPNGSYREFLAKEAHGGGLMGHFSKFKTYEAFKSHFYWPHMQHDVHKVCHTCIT
        +GFE++KE+Y NDDDF ++F+ C  +     FY   G+LF++++LC+PN S RE L +EAHGGGLMGHF   KT +    HF+WP M+ DV +VC  C+T
Subjt:  MGFEFLKEMYENDDDFGNLFSKCVNETKINNFYVFYGFLFKKDKLCIPNGSYREFLAKEAHGGGLMGHFSKFKTYEAFKSHFYWPHMQHDVHKVCHTCIT

Query:  CREVKFKCRTHGLYTPLLVPNAPWDDLSMDFILGLPRSRKEHDSIFVVVDRFSKMSHFIAFHKTDDAKNVADLFFKEVVRL
        CR+ K +   HGLYTPL VP+APW D+SMDF+LGLPRSRK  DSIFVVVDRFSKM+HFI+ HKTDDA ++ADLFF+E+VRL
Subjt:  CREVKFKCRTHGLYTPLLVPNAPWDDLSMDFILGLPRSRKEHDSIFVVVDRFSKMSHFIAFHKTDDAKNVADLFFKEVVRL

A0A2N9G0F9 Reverse transcriptase2.5e-6160.22Show/hide
Query:  MGFEFLKEMYENDDDFGNLFSKCVNETKINNFYVFYGFLFKKDKLCIPNGSYREFLAKEAHGGGLMGHFSKFKTYEAFKSHFYWPHMQHDVHKVCHTCIT
        +GFE++KE+Y NDDDF ++F+ C  +     FY   G+LF++++LC+PN S RE L +EAHGGGLMGHF   KT +    HF+WP M+ DV +VC  C+T
Subjt:  MGFEFLKEMYENDDDFGNLFSKCVNETKINNFYVFYGFLFKKDKLCIPNGSYREFLAKEAHGGGLMGHFSKFKTYEAFKSHFYWPHMQHDVHKVCHTCIT

Query:  CREVKFKCRTHGLYTPLLVPNAPWDDLSMDFILGLPRSRKEHDSIFVVVDRFSKMSHFIAFHKTDDAKNVADLFFKEVVRL
        CR+ K +   HGLYTPL VP+APW D+SMDF+LGLPRSRK  DSIFVVVDRFSKM+HFI+ HKTDDA ++ADLFF+E+VRL
Subjt:  CREVKFKCRTHGLYTPLLVPNAPWDDLSMDFILGLPRSRKEHDSIFVVVDRFSKMSHFIAFHKTDDAKNVADLFFKEVVRL

A0A2N9I0N6 Uncharacterized protein1.4e-6160.77Show/hide
Query:  MGFEFLKEMYENDDDFGNLFSKCVNETKINNFYVFYGFLFKKDKLCIPNGSYREFLAKEAHGGGLMGHFSKFKTYEAFKSHFYWPHMQHDVHKVCHTCIT
        +GFE++KE+Y NDDDF ++F+ C   T    FY   G+LF++++LC+PN S RE L +EAHGGGLMGHF   KT +    HF+WP M+ DV +VC  C+T
Subjt:  MGFEFLKEMYENDDDFGNLFSKCVNETKINNFYVFYGFLFKKDKLCIPNGSYREFLAKEAHGGGLMGHFSKFKTYEAFKSHFYWPHMQHDVHKVCHTCIT

Query:  CREVKFKCRTHGLYTPLLVPNAPWDDLSMDFILGLPRSRKEHDSIFVVVDRFSKMSHFIAFHKTDDAKNVADLFFKEVVRL
        CR+ K +   HGLYTPL VP+APW D+SMDF+LGLPRSRK  DSIFVVVDRFSKM+HFI+ HKTDDA ++ADLFF+E+VRL
Subjt:  CREVKFKCRTHGLYTPLLVPNAPWDDLSMDFILGLPRSRKEHDSIFVVVDRFSKMSHFIAFHKTDDAKNVADLFFKEVVRL

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein2.5e-1032.2Show/hide
Query:  YENDDDFGNLFSKCVNETK--INNFYVFYGFLF-KKDKLCIPNGS-YREFLAKEAHGGGLMGHFSKFKTYEAFKSHFYWPHMQHDVHKVCHTCITCREVK
        Y ND    NL +   NE K    N  +  G L   KD++ +PN +     + K+ H  G + H             F W  ++  + +    C TC+   
Subjt:  YENDDDFGNLFSKCVNETK--INNFYVFYGFLF-KKDKLCIPNGS-YREFLAKEAHGGGLMGHFSKFKTYEAFKSHFYWPHMQHDVHKVCHTCITCREVK

Query:  FKCRTHGLYTPLL-VP--NAPWDDLSMDFILGLPRSRKEHDSIFVVVDRFSKMSHFIAFHKTDDAKNVADLFFKEVV
         K R H  Y PL  +P    PW+ LSMDFI  LP S   ++++FVVVDRFSKM+  +   K+  A+  A +F + V+
Subjt:  FKCRTHGLYTPLL-VP--NAPWDDLSMDFILGLPRSRKEHDSIFVVVDRFSKMSHFIAFHKTDDAKNVADLFFKEVV

P0CT41 Transposon Tf2-12 polyprotein2.5e-1032.2Show/hide
Query:  YENDDDFGNLFSKCVNETK--INNFYVFYGFLF-KKDKLCIPNGS-YREFLAKEAHGGGLMGHFSKFKTYEAFKSHFYWPHMQHDVHKVCHTCITCREVK
        Y ND    NL +   NE K    N  +  G L   KD++ +PN +     + K+ H  G + H             F W  ++  + +    C TC+   
Subjt:  YENDDDFGNLFSKCVNETK--INNFYVFYGFLF-KKDKLCIPNGS-YREFLAKEAHGGGLMGHFSKFKTYEAFKSHFYWPHMQHDVHKVCHTCITCREVK

Query:  FKCRTHGLYTPLL-VP--NAPWDDLSMDFILGLPRSRKEHDSIFVVVDRFSKMSHFIAFHKTDDAKNVADLFFKEVV
         K R H  Y PL  +P    PW+ LSMDFI  LP S   ++++FVVVDRFSKM+  +   K+  A+  A +F + V+
Subjt:  FKCRTHGLYTPLL-VP--NAPWDDLSMDFILGLPRSRKEHDSIFVVVDRFSKMSHFIAFHKTDDAKNVADLFFKEVV

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein1.6e-2034.62Show/hide
Query:  VNETKINNFYVFYGFLFKKDKLCIPNGSYREFLAKEAHGGGLMGHFSKFKTYEAFKSHFYWPHMQHDVHKVCHTCITCREVK-FKCRTHGLYTPLLVPNA
        ++ET   N+ +    ++ +D+L +P       +          GHF    T       +YWP +QH + +   TC+ C+ +K  + R HGL  PL +   
Subjt:  VNETKINNFYVFYGFLFKKDKLCIPNGSYREFLAKEAHGGGLMGHFSKFKTYEAFKSHFYWPHMQHDVHKVCHTCITCREVK-FKCRTHGLYTPLLVPNA

Query:  PWDDLSMDFILGLPRSRKEHDSIFVVVDRFSKMSHFIAFHKTDDAKNVADLFFKEV
         W D+SMDF+ GLP +    + I VVVDRFSK +HFIA  KT DA  + DL F+ +
Subjt:  PWDDLSMDFILGLPRSRKEHDSIFVVVDRFSKMSHFIAFHKTDDAKNVADLFFKEV

Q99315 Transposon Ty3-G Gag-Pol polyprotein1.6e-2034.62Show/hide
Query:  VNETKINNFYVFYGFLFKKDKLCIPNGSYREFLAKEAHGGGLMGHFSKFKTYEAFKSHFYWPHMQHDVHKVCHTCITCREVK-FKCRTHGLYTPLLVPNA
        ++ET   N+ +    ++ +D+L +P       +          GHF    T       +YWP +QH + +   TC+ C+ +K  + R HGL  PL +   
Subjt:  VNETKINNFYVFYGFLFKKDKLCIPNGSYREFLAKEAHGGGLMGHFSKFKTYEAFKSHFYWPHMQHDVHKVCHTCITCREVK-FKCRTHGLYTPLLVPNA

Query:  PWDDLSMDFILGLPRSRKEHDSIFVVVDRFSKMSHFIAFHKTDDAKNVADLFFKEV
         W D+SMDF+ GLP +    + I VVVDRFSK +HFIA  KT DA  + DL F+ +
Subjt:  PWDDLSMDFILGLPRSRKEHDSIFVVVDRFSKMSHFIAFHKTDDAKNVADLFFKEV

Q9UR07 Transposon Tf2-11 polyprotein2.5e-1032.2Show/hide
Query:  YENDDDFGNLFSKCVNETK--INNFYVFYGFLF-KKDKLCIPNGS-YREFLAKEAHGGGLMGHFSKFKTYEAFKSHFYWPHMQHDVHKVCHTCITCREVK
        Y ND    NL +   NE K    N  +  G L   KD++ +PN +     + K+ H  G + H             F W  ++  + +    C TC+   
Subjt:  YENDDDFGNLFSKCVNETK--INNFYVFYGFLF-KKDKLCIPNGS-YREFLAKEAHGGGLMGHFSKFKTYEAFKSHFYWPHMQHDVHKVCHTCITCREVK

Query:  FKCRTHGLYTPLL-VP--NAPWDDLSMDFILGLPRSRKEHDSIFVVVDRFSKMSHFIAFHKTDDAKNVADLFFKEVV
         K R H  Y PL  +P    PW+ LSMDFI  LP S   ++++FVVVDRFSKM+  +   K+  A+  A +F + V+
Subjt:  FKCRTHGLYTPLL-VP--NAPWDDLSMDFILGLPRSRKEHDSIFVVVDRFSKMSHFIAFHKTDDAKNVADLFFKEVV

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATTTGAGTTTTTGAAAGAAATGTATGAAAATGATGATGACTTTGGTAATTTGTTTTCCAAATGTGTGAATGAAACAAAAATAAATAATTTTTATGTTTTTTATGG
ATTTTTGTTTAAGAAAGATAAACTTTGCATTCCAAATGGTTCATATAGAGAATTTCTTGCAAAGGAAGCACATGGTGGTGGTTTAATGGGTCATTTTTCTAAATTTAAAA
CATATGAAGCATTCAAGAGTCATTTTTATTGGCCACATATGCAACATGATGTTCACAAAGTTTGTCATACATGTATTACATGTCGAGAAGTTAAATTTAAATGTAGGACA
CATGGATTGTATACACCTTTGCTTGTCCCTAATGCACCTTGGGATGATTTGTCTATGGATTTTATTCTTGGTCTCCCTAGGTCTAGGAAAGAACATGATAGCATCTTTGT
TGTTGTTGATCGTTTTAGTAAAATGTCACATTTCATTGCCTTTCATAAAACTGATGATGCCAAGAATGTTGCAGATTTATTCTTTAAGGAAGTTGTAAGGTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGATTTGAGTTTTTGAAAGAAATGTATGAAAATGATGATGACTTTGGTAATTTGTTTTCCAAATGTGTGAATGAAACAAAAATAAATAATTTTTATGTTTTTTATGG
ATTTTTGTTTAAGAAAGATAAACTTTGCATTCCAAATGGTTCATATAGAGAATTTCTTGCAAAGGAAGCACATGGTGGTGGTTTAATGGGTCATTTTTCTAAATTTAAAA
CATATGAAGCATTCAAGAGTCATTTTTATTGGCCACATATGCAACATGATGTTCACAAAGTTTGTCATACATGTATTACATGTCGAGAAGTTAAATTTAAATGTAGGACA
CATGGATTGTATACACCTTTGCTTGTCCCTAATGCACCTTGGGATGATTTGTCTATGGATTTTATTCTTGGTCTCCCTAGGTCTAGGAAAGAACATGATAGCATCTTTGT
TGTTGTTGATCGTTTTAGTAAAATGTCACATTTCATTGCCTTTCATAAAACTGATGATGCCAAGAATGTTGCAGATTTATTCTTTAAGGAAGTTGTAAGGTTGTAA
Protein sequenceShow/hide protein sequence
MGFEFLKEMYENDDDFGNLFSKCVNETKINNFYVFYGFLFKKDKLCIPNGSYREFLAKEAHGGGLMGHFSKFKTYEAFKSHFYWPHMQHDVHKVCHTCITCREVKFKCRT
HGLYTPLLVPNAPWDDLSMDFILGLPRSRKEHDSIFVVVDRFSKMSHFIAFHKTDDAKNVADLFFKEVVRL