CuGenDBv2

Gene ID	Cmc10g0281121
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Transposon Tf2-6 polyprotein
Genome location	CMiso1.1chr10:19287972..19288436
RNA-Seq Expression	Cmc10g0281121
Synteny	Cmc10g0281121
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0038941.1 Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa]

7.6e-74

89.4

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Query:  MVEEDIPKTAFRTHEGHYEFFVMPFGLTNGSATFQALMNKIFRPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQQKIEYL
        MV++DIPKTAFRTHEGHYEF VMPFGLTN   TFQALMN IFRPF RKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQ+KIEYL
Subjt:  MVEEDIPKTAFRTHEGHYEFFVMPFGLTNGSATFQALMNKIFRPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQQKIEYL

Query:  GHVISREGVEVDSEKIKEVADWPCSINIREVQGFLGLTGYYRRFVQHYGSM
        GH+IS EGVEVDSEKIK VADWPC  NI+EVQGFLGLTGYYRRFVQHYGS+
Subjt:  GHVISREGVEVDSEKIKEVADWPCSINIREVQGFLGLTGYYRRFVQHYGSM

KAA0053432.1 Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa]

2.0e-74

91.39

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Query:  MVEEDIPKTAFRTHEGHYEFFVMPFGLTNGSATFQALMNKIFRPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQQKIEYL
        MV+EDIPKTAFRTHEGHYEF VMPFGLTN  ATFQALMN IFRPFLRKFVLVFFDDILI SKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQQKIEYL
Subjt:  MVEEDIPKTAFRTHEGHYEFFVMPFGLTNGSATFQALMNKIFRPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQQKIEYL

Query:  GHVISREGVEVDSEKIKEVADWPCSINIREVQGFLGLTGYYRRFVQHYGSM
        GHVIS EGVEVDSEKIK VADWPC  NI+EV+GFLGLTGYYRRFVQHYGS+
Subjt:  GHVISREGVEVDSEKIKEVADWPCSINIREVQGFLGLTGYYRRFVQHYGSM

TYK02195.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

3.8e-73

86.75

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Query:  MVEEDIPKTAFRTHEGHYEFFVMPFGLTNGSATFQALMNKIFRPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQQKIEYL
        M+++DIPKTAFRTHEGHYEF VMPFGLTN  ATFQALMN IFRPFLRKFVLVFFDDILIYSKNEKDH+EHIEKVFL LR+H+LFANKKKCNFGQ+K+EYL
Subjt:  MVEEDIPKTAFRTHEGHYEFFVMPFGLTNGSATFQALMNKIFRPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQQKIEYL

Query:  GHVISREGVEVDSEKIKEVADWPCSINIREVQGFLGLTGYYRRFVQHYGSM
        GH+IS EGVEVDSEKIK VADWPC  NIREV+GFLGLTGYYRRFVQHYGS+
Subjt:  GHVISREGVEVDSEKIKEVADWPCSINIREVQGFLGLTGYYRRFVQHYGSM

TYK06548.1 putative retroelement pol polyprotein [Cucumis melo var. makuwa]

3.8e-73

86.75

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Query:  MVEEDIPKTAFRTHEGHYEFFVMPFGLTNGSATFQALMNKIFRPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQQKIEYL
        M+++DIPKTAFRTHEGHYEF VMPFGLTN  ATFQALMN IFRPFLRKFVLVFFDDILIYSKNEKDH+EHIEKVFL LR+H+LFANKKKCNFGQ+K+EYL
Subjt:  MVEEDIPKTAFRTHEGHYEFFVMPFGLTNGSATFQALMNKIFRPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQQKIEYL

Query:  GHVISREGVEVDSEKIKEVADWPCSINIREVQGFLGLTGYYRRFVQHYGSM
        GH+IS EGVEVDSEKIK VADWPC  NIREV+GFLGLTGYYRRFVQHYGS+
Subjt:  GHVISREGVEVDSEKIKEVADWPCSINIREVQGFLGLTGYYRRFVQHYGSM

TYK11209.1 Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa]

7.6e-74

89.4

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Query:  MVEEDIPKTAFRTHEGHYEFFVMPFGLTNGSATFQALMNKIFRPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQQKIEYL
        MV++DIPKTAFRTHEGHYEF VMPFGLTN   TFQALMN IFRPF RKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQ+KIEYL
Subjt:  MVEEDIPKTAFRTHEGHYEFFVMPFGLTNGSATFQALMNKIFRPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQQKIEYL

Query:  GHVISREGVEVDSEKIKEVADWPCSINIREVQGFLGLTGYYRRFVQHYGSM
        GH+IS EGVEVDSEKIK VADWPC  NI+EVQGFLGLTGYYRRFVQHYGS+
Subjt:  GHVISREGVEVDSEKIKEVADWPCSINIREVQGFLGLTGYYRRFVQHYGSM

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TBE6 Transposon Tf2-9 polyprotein

3.7e-74

89.4

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Query:  MVEEDIPKTAFRTHEGHYEFFVMPFGLTNGSATFQALMNKIFRPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQQKIEYL
        MV++DIPKTAFRTHEGHYEF VMPFGLTN   TFQALMN IFRPF RKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQ+KIEYL
Subjt:  MVEEDIPKTAFRTHEGHYEFFVMPFGLTNGSATFQALMNKIFRPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQQKIEYL

Query:  GHVISREGVEVDSEKIKEVADWPCSINIREVQGFLGLTGYYRRFVQHYGSM
        GH+IS EGVEVDSEKIK VADWPC  NI+EVQGFLGLTGYYRRFVQHYGS+
Subjt:  GHVISREGVEVDSEKIKEVADWPCSINIREVQGFLGLTGYYRRFVQHYGSM

A0A5A7UCF9 Transposon Tf2-6 polyprotein

9.7e-75

91.39

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Query:  MVEEDIPKTAFRTHEGHYEFFVMPFGLTNGSATFQALMNKIFRPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQQKIEYL
        MV+EDIPKTAFRTHEGHYEF VMPFGLTN  ATFQALMN IFRPFLRKFVLVFFDDILI SKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQQKIEYL
Subjt:  MVEEDIPKTAFRTHEGHYEFFVMPFGLTNGSATFQALMNKIFRPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQQKIEYL

Query:  GHVISREGVEVDSEKIKEVADWPCSINIREVQGFLGLTGYYRRFVQHYGSM
        GHVIS EGVEVDSEKIK VADWPC  NI+EV+GFLGLTGYYRRFVQHYGS+
Subjt:  GHVISREGVEVDSEKIKEVADWPCSINIREVQGFLGLTGYYRRFVQHYGSM

A0A5D3BSD7 Putative retroelement pol polyprotein

1.8e-73

86.75

Show/hide

Query:  MVEEDIPKTAFRTHEGHYEFFVMPFGLTNGSATFQALMNKIFRPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQQKIEYL
        M+++DIPKTAFRTHEGHYEF VMPFGLTN  ATFQALMN IFRPFLRKFVLVFFDDILIYSKNEKDH+EHIEKVFL LR+H+LFANKKKCNFGQ+K+EYL
Subjt:  MVEEDIPKTAFRTHEGHYEFFVMPFGLTNGSATFQALMNKIFRPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQQKIEYL

Query:  GHVISREGVEVDSEKIKEVADWPCSINIREVQGFLGLTGYYRRFVQHYGSM
        GH+IS EGVEVDSEKIK VADWPC  NIREV+GFLGLTGYYRRFVQHYGS+
Subjt:  GHVISREGVEVDSEKIKEVADWPCSINIREVQGFLGLTGYYRRFVQHYGSM

A0A5D3BSP2 Ty3/gypsy retrotransposon protein

1.8e-73

86.75

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Query:  MVEEDIPKTAFRTHEGHYEFFVMPFGLTNGSATFQALMNKIFRPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQQKIEYL
        M+++DIPKTAFRTHEGHYEF VMPFGLTN  ATFQALMN IFRPFLRKFVLVFFDDILIYSKNEKDH+EHIEKVFL LR+H+LFANKKKCNFGQ+K+EYL
Subjt:  MVEEDIPKTAFRTHEGHYEFFVMPFGLTNGSATFQALMNKIFRPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQQKIEYL

Query:  GHVISREGVEVDSEKIKEVADWPCSINIREVQGFLGLTGYYRRFVQHYGSM
        GH+IS EGVEVDSEKIK VADWPC  NIREV+GFLGLTGYYRRFVQHYGS+
Subjt:  GHVISREGVEVDSEKIKEVADWPCSINIREVQGFLGLTGYYRRFVQHYGSM

A0A5D3CLW4 Transposon Tf2-6 polyprotein

3.7e-74

89.4

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Query:  MVEEDIPKTAFRTHEGHYEFFVMPFGLTNGSATFQALMNKIFRPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQQKIEYL
        MV++DIPKTAFRTHEGHYEF VMPFGLTN   TFQALMN IFRPF RKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQ+KIEYL
Subjt:  MVEEDIPKTAFRTHEGHYEFFVMPFGLTNGSATFQALMNKIFRPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQQKIEYL

Query:  GHVISREGVEVDSEKIKEVADWPCSINIREVQGFLGLTGYYRRFVQHYGSM
        GH+IS EGVEVDSEKIK VADWPC  NI+EVQGFLGLTGYYRRFVQHYGS+
Subjt:  GHVISREGVEVDSEKIKEVADWPCSINIREVQGFLGLTGYYRRFVQHYGSM

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

1.3e-31

41.72

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Query:  MVEEDIPKTAFRTHEGHYEFFVMPFGLTNGSATFQALMNKIFRPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQQKIEYL
        M  E + KTAF T  GHYE+  MPFGL N  ATFQ  MN I RP L K  LV+ DDI+++S +  +H++ +  VF  L +  L     KC F +Q+  +L
Subjt:  MVEEDIPKTAFRTHEGHYEFFVMPFGLTNGSATFQALMNKIFRPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQQKIEYL

Query:  GHVISREGVEVDSEKIKEVADWPCSINIREVQGFLGLTGYYRRFVQHYGSM
        GHV++ +G++ + EKI+ +  +P     +E++ FLGLTGYYR+F+ ++  +
Subjt:  GHVISREGVEVDSEKIKEVADWPCSINIREVQGFLGLTGYYRRFVQHYGSM

P10401 Retrovirus-related Pol polyprotein from transposon gypsy

2.5e-27

36.42

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Query:  MVEEDIPKTAFRTHEGHYEFFVMPFGLTNGSATFQALMNKIFRPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQQKIEYL
        + E D  KT+F  + G YEF  +PFGL N S+ FQ  ++ + R  + K   V+ DD++I+S+NE DHV HI+ V   L    +  +++K  F ++ +EYL
Subjt:  MVEEDIPKTAFRTHEGHYEFFVMPFGLTNGSATFQALMNKIFRPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQQKIEYL

Query:  GHVISREGVEVDSEKIKEVADWPCSINIREVQGFLGLTGYYRRFVQHYGSM
        G ++S++G + D EK+K + ++P    + +V+ FLGL  YYR F++ + ++
Subjt:  GHVISREGVEVDSEKIKEVADWPCSINIREVQGFLGLTGYYRRFVQHYGSM

P20825 Retrovirus-related Pol polyprotein from transposon 297

1.2e-32

43.05

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Query:  MVEEDIPKTAFRTHEGHYEFFVMPFGLTNGSATFQALMNKIFRPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQQKIEYL
        M EE I KTAF T  GHYE+  MPFGL N  ATFQ  MN I RP L K  LV+ DDI+I+S +  +H+  I+ VF  L    L     KC F +++  +L
Subjt:  MVEEDIPKTAFRTHEGHYEFFVMPFGLTNGSATFQALMNKIFRPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQQKIEYL

Query:  GHVISREGVEVDSEKIKEVADWPCSINIREVQGFLGLTGYYRRFVQHYGSM
        GH+++ +G++ +  K+K +  +P     +E++ FLGLTGYYR+F+ +Y  +
Subjt:  GHVISREGVEVDSEKIKEVADWPCSINIREVQGFLGLTGYYRRFVQHYGSM

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

5.9e-29

36.42

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Query:  MVEEDIPKTAFRTHEGHYEFFVMPFGLTNGSATFQALMNKIFRPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQQKIEYL
        M E DIPKTAF T  G YEF  +PFGL N  A FQ +++ I R  + K   V+ DDI+++S++   H +++  V  +L +  L  N +K +F   ++E+L
Subjt:  MVEEDIPKTAFRTHEGHYEFFVMPFGLTNGSATFQALMNKIFRPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQQKIEYL

Query:  GHVISREGVEVDSEKIKEVADWPCSINIREVQGFLGLTGYYRRFVQHYGSM
        G++++ +G++ D +K++ +++ P   +++E++ FLG+T YYR+F+Q Y  +
Subjt:  GHVISREGVEVDSEKIKEVADWPCSINIREVQGFLGLTGYYRRFVQHYGSM

Q99315 Transposon Ty3-G Gag-Pol polyprotein

8.8e-25

39.31

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Query:  MVEEDIPKTAFRTHEGHYEFFVMPFGLTNGSATFQALMNKIFRPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQQKIEYL
        M  +D  KTAF T  G YE+ VMPFGL N  +TF   M   FR    +FV V+ DDILI+S++ ++H +H++ V   L+   L   KKKC F  ++ E+L
Subjt:  MVEEDIPKTAFRTHEGHYEFFVMPFGLTNGSATFQALMNKIFRPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQQKIEYL

Query:  GHVISREGVEVDSEKIKEVADWPCSINIREVQGFLGLTGYYRRFV
        G+ I  + +     K   + D+P    +++ Q FLG+  YYRRF+
Subjt:  GHVISREGVEVDSEKIKEVADWPCSINIREVQGFLGLTGYYRRFV

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

4.4e-19

48.28

Show/hide

Query:  VEHIEKVFLTLRRHALFANKKKCNFGQQKIEYLG--HVISREGVEVDSEKIKEVADWPCSINIREVQGFLGLTGYYRRFVQHYGSML
        + H+  V     +H  +AN+KKC FGQ +I YLG  H+IS EGV  D  K++ +  WP   N  E++GFLGLTGYYRRFV++YG ++
Subjt:  VEHIEKVFLTLRRHALFANKKKCNFGQQKIEYLG--HVISREGVEVDSEKIKEVADWPCSINIREVQGFLGLTGYYRRFVQHYGSML

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGTTGAGGAGGATATTCCAAAAACGGCTTTTCGCACTCATGAAGGTCATTACGAGTTTTTTGTTATGCCGTTTGGATTAACCAACGGTTCTGCCACTTTTCAA
GCCTTGATGAATAAAATTTTTAGACCATTTTTGAGAAAATTTGTTTTGGTCTTCTTCGATGATATCCTGATCTACAGCAAAAATGAGAAGGACCACGTAGAGCAT
ATTGAAAAGGTCTTCCTCACATTAAGAAGACATGCCTTATTCGCCAATAAAAAAAAGTGTAATTTTGGTCAGCAAAAGATTGAATATTTGGGGCACGTCATATCA
AGGGAAGGAGTAGAAGTAGATTCTGAAAAAATCAAAGAAGTTGCAGATTGGCCATGCTCAATAAACATAAGAGAAGTTCAAGGATTCCTTGGATTAACAGGCTAC
TATAGGAGATTCGTCCAACATTATGGGTCGATGCTGCCCCTTTAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MVEEDIPKTAFRTHEGHYEFFVMPFGLTNGSATFQALMNKIFRPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQQKIEYLGHVIS
REGVEVDSEKIKEVADWPCSINIREVQGFLGLTGYYRRFVQHYGSMLPL

Cmc10g0281121 (gene) of Melon (Charmono) v1.1 genome