CuGenDBv2

Gene ID	Cmc10g0281271
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Genome location	CMiso1.1chr10:19505043..19505432
RNA-Seq Expression	Cmc10g0281271
Synteny	Cmc10g0281271
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0046416.1 gag/pol protein [Cucumis melo var. makuwa]

3.1e-44

73.64

Show/hide

Query:  MYAMLCTRLDIFYMVGVVSRYRYNPGFTRWITIKTILKYLRRTRNHILMYGSKNLILTGYTDSDFQTNRVSRKSTLGLVFTFNEEAVVWRSIKQECIVDS
        MYAMLCTR DI Y VG+VSRY+ NPG   W  +KTILKYLRRTR+++L+YGSK+LILTGYTDSDFQT+R SRKST G VFT N  AVVWRSIKQ CIVDS
Subjt:  MYAMLCTRLDIFYMVGVVSRYRYNPGFTRWITIKTILKYLRRTRNHILMYGSKNLILTGYTDSDFQTNRVSRKSTLGLVFTFNEEAVVWRSIKQECIVDS

Query:  TMKAEYVITYEAAKKAIWLGIFLTDLEVV
        TM+AEYV   EAAK+A+WL  FL DLEVV
Subjt:  TMKAEYVITYEAAKKAIWLGIFLTDLEVV

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

1.5e-43

72.87

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Query:  MYAMLCTRLDIFYMVGVVSRYRYNPGFTRWITIKTILKYLRRTRNHILMYGSKNLILTGYTDSDFQTNRVSRKSTLGLVFTFNEEAVVWRSIKQECIVDS
        MYAMLCTR DI Y VG+VSRY+ NPG   W  +KTILKYLRRTR++ L+YGSK+LILTGYTDSDFQT+R SRKST G VFT N  AVVWRSIKQ CI DS
Subjt:  MYAMLCTRLDIFYMVGVVSRYRYNPGFTRWITIKTILKYLRRTRNHILMYGSKNLILTGYTDSDFQTNRVSRKSTLGLVFTFNEEAVVWRSIKQECIVDS

Query:  TMKAEYVITYEAAKKAIWLGIFLTDLEVV
        TM+AEYV   EAAK+A+WL  FL DLEVV
Subjt:  TMKAEYVITYEAAKKAIWLGIFLTDLEVV

KAA0049636.1 gag/pol protein [Cucumis melo var. makuwa]

1.5e-43

72.87

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Query:  MYAMLCTRLDIFYMVGVVSRYRYNPGFTRWITIKTILKYLRRTRNHILMYGSKNLILTGYTDSDFQTNRVSRKSTLGLVFTFNEEAVVWRSIKQECIVDS
        MYAMLCTR DI Y VG+VSRY+ NPG   W  +KTILKYLRRTR++ L+YGSK+LILTGYTDSDFQT+R SRKST G VFT N  AVVWRSIKQ CI DS
Subjt:  MYAMLCTRLDIFYMVGVVSRYRYNPGFTRWITIKTILKYLRRTRNHILMYGSKNLILTGYTDSDFQTNRVSRKSTLGLVFTFNEEAVVWRSIKQECIVDS

Query:  TMKAEYVITYEAAKKAIWLGIFLTDLEVV
        TM+AEYV   EAAK+A+WL  FL DLEVV
Subjt:  TMKAEYVITYEAAKKAIWLGIFLTDLEVV

TYJ97618.1 gag/pol protein [Cucumis melo var. makuwa]

1.5e-43

72.87

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Query:  MYAMLCTRLDIFYMVGVVSRYRYNPGFTRWITIKTILKYLRRTRNHILMYGSKNLILTGYTDSDFQTNRVSRKSTLGLVFTFNEEAVVWRSIKQECIVDS
        MYAMLCTR DI Y VG+VSRY+ NPG   W  +KTILKYLRRTR++ L+YGSK+LILTGYTDSDFQT+R SRKST G VFT N  AVVWRSIKQ CI DS
Subjt:  MYAMLCTRLDIFYMVGVVSRYRYNPGFTRWITIKTILKYLRRTRNHILMYGSKNLILTGYTDSDFQTNRVSRKSTLGLVFTFNEEAVVWRSIKQECIVDS

Query:  TMKAEYVITYEAAKKAIWLGIFLTDLEVV
        TM+AEYV   EAAK+A+WL  FL DLEVV
Subjt:  TMKAEYVITYEAAKKAIWLGIFLTDLEVV

TYK05759.1 gag/pol protein [Cucumis melo var. makuwa]

6.8e-44

72.87

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Query:  MYAMLCTRLDIFYMVGVVSRYRYNPGFTRWITIKTILKYLRRTRNHILMYGSKNLILTGYTDSDFQTNRVSRKSTLGLVFTFNEEAVVWRSIKQECIVDS
        MYAMLCTR +I Y VG+VS+Y+ NPG   WI +KTILKYLRR RN++L+YGSK+LILTGYTDSDFQT+R SRKST G VFT N  AVVWRSIKQ CIVDS
Subjt:  MYAMLCTRLDIFYMVGVVSRYRYNPGFTRWITIKTILKYLRRTRNHILMYGSKNLILTGYTDSDFQTNRVSRKSTLGLVFTFNEEAVVWRSIKQECIVDS

Query:  TMKAEYVITYEAAKKAIWLGIFLTDLEVV
        TM+AEYV   EAAK+A+WL  FL DLEVV
Subjt:  TMKAEYVITYEAAKKAIWLGIFLTDLEVV

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

7.4e-44

72.87

Show/hide

Query:  MYAMLCTRLDIFYMVGVVSRYRYNPGFTRWITIKTILKYLRRTRNHILMYGSKNLILTGYTDSDFQTNRVSRKSTLGLVFTFNEEAVVWRSIKQECIVDS
        MYAMLCTR DI Y VG+VSRY+ NPG   W  +KTILKYLRRTR++ L+YGSK+LILTGYTDSDFQT+R SRKST G VFT N  AVVWRSIKQ CI DS
Subjt:  MYAMLCTRLDIFYMVGVVSRYRYNPGFTRWITIKTILKYLRRTRNHILMYGSKNLILTGYTDSDFQTNRVSRKSTLGLVFTFNEEAVVWRSIKQECIVDS

Query:  TMKAEYVITYEAAKKAIWLGIFLTDLEVV
        TM+AEYV   EAAK+A+WL  FL DLEVV
Subjt:  TMKAEYVITYEAAKKAIWLGIFLTDLEVV

A0A5A7TWI0 Gag/pol protein

1.5e-44

73.64

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Query:  MYAMLCTRLDIFYMVGVVSRYRYNPGFTRWITIKTILKYLRRTRNHILMYGSKNLILTGYTDSDFQTNRVSRKSTLGLVFTFNEEAVVWRSIKQECIVDS
        MYAMLCTR DI Y VG+VSRY+ NPG   W  +KTILKYLRRTR+++L+YGSK+LILTGYTDSDFQT+R SRKST G VFT N  AVVWRSIKQ CIVDS
Subjt:  MYAMLCTRLDIFYMVGVVSRYRYNPGFTRWITIKTILKYLRRTRNHILMYGSKNLILTGYTDSDFQTNRVSRKSTLGLVFTFNEEAVVWRSIKQECIVDS

Query:  TMKAEYVITYEAAKKAIWLGIFLTDLEVV
        TM+AEYV   EAAK+A+WL  FL DLEVV
Subjt:  TMKAEYVITYEAAKKAIWLGIFLTDLEVV

A0A5D3C5V6 Gag/pol protein

3.3e-44

72.87

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Query:  MYAMLCTRLDIFYMVGVVSRYRYNPGFTRWITIKTILKYLRRTRNHILMYGSKNLILTGYTDSDFQTNRVSRKSTLGLVFTFNEEAVVWRSIKQECIVDS
        MYAMLCTR +I Y VG+VS+Y+ NPG   WI +KTILKYLRR RN++L+YGSK+LILTGYTDSDFQT+R SRKST G VFT N  AVVWRSIKQ CIVDS
Subjt:  MYAMLCTRLDIFYMVGVVSRYRYNPGFTRWITIKTILKYLRRTRNHILMYGSKNLILTGYTDSDFQTNRVSRKSTLGLVFTFNEEAVVWRSIKQECIVDS

Query:  TMKAEYVITYEAAKKAIWLGIFLTDLEVV
        TM+AEYV   EAAK+A+WL  FL DLEVV
Subjt:  TMKAEYVITYEAAKKAIWLGIFLTDLEVV

A0A5D3CPJ6 Gag/pol protein

7.4e-44

72.87

Show/hide

Query:  MYAMLCTRLDIFYMVGVVSRYRYNPGFTRWITIKTILKYLRRTRNHILMYGSKNLILTGYTDSDFQTNRVSRKSTLGLVFTFNEEAVVWRSIKQECIVDS
        MYAMLCTR DI Y VG+VSRY+ NPG   W  +KTILKYLRRTR++ L+YGSK+LILTGYTDSDFQT+R SRKST G VFT N  AVVWRSIKQ CI DS
Subjt:  MYAMLCTRLDIFYMVGVVSRYRYNPGFTRWITIKTILKYLRRTRNHILMYGSKNLILTGYTDSDFQTNRVSRKSTLGLVFTFNEEAVVWRSIKQECIVDS

Query:  TMKAEYVITYEAAKKAIWLGIFLTDLEVV
        TM+AEYV   EAAK+A+WL  FL DLEVV
Subjt:  TMKAEYVITYEAAKKAIWLGIFLTDLEVV

A0A5D3CSZ6 Gag/pol protein

7.4e-44

72.87

Show/hide

Query:  MYAMLCTRLDIFYMVGVVSRYRYNPGFTRWITIKTILKYLRRTRNHILMYGSKNLILTGYTDSDFQTNRVSRKSTLGLVFTFNEEAVVWRSIKQECIVDS
        MYAMLCTR DI Y VG+VSRY+ NPG   W  +KTILKYLRRTR++ L+YGSK+LILTGYTDSDFQT+R SRKST G VFT N  AVVWRSIKQ CI DS
Subjt:  MYAMLCTRLDIFYMVGVVSRYRYNPGFTRWITIKTILKYLRRTRNHILMYGSKNLILTGYTDSDFQTNRVSRKSTLGLVFTFNEEAVVWRSIKQECIVDS

Query:  TMKAEYVITYEAAKKAIWLGIFLTDLEVV
        TM+AEYV   EAAK+A+WL  FL DLEVV
Subjt:  TMKAEYVITYEAAKKAIWLGIFLTDLEVV

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

3.7e-16

35.34

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Query:  MYAMLCTRLDIFYMVGVVSRYRYNPGFTRWITIKTILKYLRRTRNHILMYGSKNLI----LTGYTDSDFQTNRVSRKSTLGLVF-TFNEEAVVWRSIKQE
        MY MLCTR D+   V ++SRY        W  +K +L+YL+ T +  L++  KNL     + GY DSD+  + + RKST G +F  F+   + W + +Q 
Subjt:  MYAMLCTRLDIFYMVGVVSRYRYNPGFTRWITIKTILKYLRRTRNHILMYGSKNLI----LTGYTDSDFQTNRVSRKSTLGLVF-TFNEEAVVWRSIKQE

Query:  CIVDSTMKAEYVITYEAAKKAIWLGIFLTDLEV
         +  S+ +AEY+  +EA ++A+WL   LT + +
Subjt:  CIVDSTMKAEYVITYEAAKKAIWLGIFLTDLEV

P0CV72 Secreted RxLR effector protein 161

5.3e-15

36.89

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Query:  MYAMLCTRLDIFYMVGVVSRYRYNPGFTRWITIKTILKYLRRTRNHILMYGSKNLI-LTGYTDSDFQTNRVSRKSTLGLVFTFNEEAVVWRSIKQECIVD
        MY M+ TR D+   VGV+S++  +P  T W  +K +L+YL+ T+ + L +       L GY+D+D+  +  SR+ST G +F  N   V WRS KQ  +  
Subjt:  MYAMLCTRLDIFYMVGVVSRYRYNPGFTRWITIKTILKYLRRTRNHILMYGSKNLI-LTGYTDSDFQTNRVSRKSTLGLVFTFNEEAVVWRSIKQECIVD

Query:  STMKAEYVITYEAAKKAIWLGI
        S+ + EY+   EA ++A+WL +
Subjt:  STMKAEYVITYEAAKKAIWLGI

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.9e-25

47.62

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Query:  MYAMLCTRLDIFYMVGVVSRYRYNPGFTRWITIKTILKYLRRTRNHILMYGSKNLILTGYTDSDFQTNRVSRKSTLGLVFTFNEEAVVWRSIKQECIVDS
        MYAM+CTR DI + VGVVSR+  NPG   W  +K IL+YLR T    L +G  + IL GYTD+D   +  +RKS+ G +FTF+  A+ W+S  Q+C+  S
Subjt:  MYAMLCTRLDIFYMVGVVSRYRYNPGFTRWITIKTILKYLRRTRNHILMYGSKNLILTGYTDSDFQTNRVSRKSTLGLVFTFNEEAVVWRSIKQECIVDS

Query:  TMKAEYVITYEAAKKAIWLGIFLTDL
        T +AEY+   E  K+ IWL  FL +L
Subjt:  TMKAEYVITYEAAKKAIWLGIFLTDL

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

2.0e-09

29.46

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Query:  MYAMLCTRLDIFYMVGVVSRYRYNPGFTRWITIKTILKYLRRTRNHILMYGSK-NLILTGYTDSDFQTNRVSRKSTLGLVFTFNEEAVVWRSIKQECIVD
        MY  + TRLDI + V  +S++   P       +  IL Y++ T    L Y S+  + L  ++D+ FQ+ + +R+ST G         + W+S KQ+ +  
Subjt:  MYAMLCTRLDIFYMVGVVSRYRYNPGFTRWITIKTILKYLRRTRNHILMYGSK-NLILTGYTDSDFQTNRVSRKSTLGLVFTFNEEAVVWRSIKQECIVD

Query:  STMKAEYVITYEAAKKAIWLGIFLTDLEV
        S+ +AEY     A  + +WL  F  +L++
Subjt:  STMKAEYVITYEAAKKAIWLGIFLTDLEV

Sequences

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CDS sequence

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ATGTATGCGATGTTATGTACTAGACTTGACATTTTTTATATGGTGGGGGTAGTCAGTAGATATCGATATAATCCAGGATTTACTCGCTGGATTACCATTAAAACT
ATCCTTAAATATCTTAGGAGAACGAGGAACCATATTCTTATGTATGGTTCTAAGAATTTGATTCTTACAGGATACACAGACTCTGACTTTCAAACTAATAGAGTT
TCTAGGAAATCTACTTTAGGTTTAGTGTTTACATTTAATGAAGAAGCTGTAGTTTGGAGAAGTATCAAGCAAGAGTGTATTGTTGACTCTACCATGAAGGCAGAG
TATGTCATAACTTATGAAGCTGCAAAAAAGGCTATCTGGCTTGGAATATTCTTGACTGATTTGGAAGTTGTTTGA

mRNA sequence

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Protein sequence

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MYAMLCTRLDIFYMVGVVSRYRYNPGFTRWITIKTILKYLRRTRNHILMYGSKNLILTGYTDSDFQTNRVSRKSTLGLVFTFNEEAVVWRSIKQECIVDSTMKAE
YVITYEAAKKAIWLGIFLTDLEVV

Cmc10g0281271 (gene) of Melon (Charmono) v1.1 genome