; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc10g0282971 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc10g0282971
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr10:22727437..22728204
RNA-Seq ExpressionCmc10g0282971
SyntenyCmc10g0282971
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035138.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]8.3e-12683.53Show/hide
Query:  MHLGSTEMYRTLKKTYWWPRMKQEIVEYVDRCLICQQLKLVRRRPEGFFNPFPLPEWKWEHITTDFLFGLPRTSNGHDGIWVIIDRLTKTTQFIPVKATF
        MH GST+MYRTLKKTYWW  MKQEI EYVDRCLICQQ+K VR+RPEGF NP P+PEWKWEHIT DFLFGLPRTS+GHDGIWVI+DRLTKTT+FIP+K T 
Subjt:  MHLGSTEMYRTLKKTYWWPRMKQEIVEYVDRCLICQQLKLVRRRPEGFFNPFPLPEWKWEHITTDFLFGLPRTSNGHDGIWVIIDRLTKTTQFIPVKATF

Query:  TLDQLARLYVDKIMSQYGVPVSIASYRDSRFTSKIWPCLHKAMGTGLKFSTSFHPHTDGKSEKTIQALEDMLRACVLQLKGSWDTHLPLMEFAYNNIYKS
        TLDQLARLYVDKI+SQY VPVSI S RD RFTSK WP L KAMGTGLKFSTSFHP TDG+SE+T+Q LEDMLRACVLQLKGSWDTHLPLMEF YNN Y+S
Subjt:  TLDQLARLYVDKIMSQYGVPVSIASYRDSRFTSKIWPCLHKAMGTGLKFSTSFHPHTDGKSEKTIQALEDMLRACVLQLKGSWDTHLPLMEFAYNNIYKS

Query:  SIDMVPYEALYGRPCRTSVCWHEVGERKLVGPKLVQVTINNIKLIRKNLRIAQDR
        SI M PYEALYGRPCRT VCW+EVGERKLVGP+LVQ+T NNIKLIR+NLRIAQDR
Subjt:  SIDMVPYEALYGRPCRTSVCWHEVGERKLVGPKLVQVTINNIKLIRKNLRIAQDR

KAA0037545.1 reverse transcriptase [Cucumis melo var. makuwa]3.7e-12684.31Show/hide
Query:  MHLGSTEMYRTLKKTYWWPRMKQEIVEYVDRCLICQQLKLVRRRPEGFFNPFPLPEWKWEHITTDFLFGLPRTSNGHDGIWVIIDRLTKTTQFIPVKATF
        MH GST+MYRTLKKTYWW  MKQEI EYVDRCLICQQ+KLVR+RP GF NP PLPEWKWEHIT DFLFGLPRTS+GHDGIWVI+DRLTK T+FIP+K T 
Subjt:  MHLGSTEMYRTLKKTYWWPRMKQEIVEYVDRCLICQQLKLVRRRPEGFFNPFPLPEWKWEHITTDFLFGLPRTSNGHDGIWVIIDRLTKTTQFIPVKATF

Query:  TLDQLARLYVDKIMSQYGVPVSIASYRDSRFTSKIWPCLHKAMGTGLKFSTSFHPHTDGKSEKTIQALEDMLRACVLQLKGSWDTHLPLMEFAYNNIYKS
        TLDQLARLYVDKI+SQYGVPVSI S RD RFTSK WP L KAMGTGLKFSTSFHP TDG+SE+TIQ LEDMLRACVLQLKGSWDTHLPLMEFAYNN Y+S
Subjt:  TLDQLARLYVDKIMSQYGVPVSIASYRDSRFTSKIWPCLHKAMGTGLKFSTSFHPHTDGKSEKTIQALEDMLRACVLQLKGSWDTHLPLMEFAYNNIYKS

Query:  SIDMVPYEALYGRPCRTSVCWHEVGERKLVGPKLVQVTINNIKLIRKNLRIAQDR
        SI M PYEALYGRPCRT VCW+EVGERKLVGP+LVQ+T NNIKLIR+NLR AQDR
Subjt:  SIDMVPYEALYGRPCRTSVCWHEVGERKLVGPKLVQVTINNIKLIRKNLRIAQDR

KAA0053246.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.1e-12583.92Show/hide
Query:  MHLGSTEMYRTLKKTYWWPRMKQEIVEYVDRCLICQQLKLVRRRPEGFFNPFPLPEWKWEHITTDFLFGLPRTSNGHDGIWVIIDRLTKTTQFIPVKATF
        MH GST+MYRTLKKTYWW  MKQEI EYVDRCLICQQ+K VR+RP GF NP P+PEWKWEHIT DFLFGLPRTS+GHDGIWVI+DRLTKTT+FIP+K T 
Subjt:  MHLGSTEMYRTLKKTYWWPRMKQEIVEYVDRCLICQQLKLVRRRPEGFFNPFPLPEWKWEHITTDFLFGLPRTSNGHDGIWVIIDRLTKTTQFIPVKATF

Query:  TLDQLARLYVDKIMSQYGVPVSIASYRDSRFTSKIWPCLHKAMGTGLKFSTSFHPHTDGKSEKTIQALEDMLRACVLQLKGSWDTHLPLMEFAYNNIYKS
        TLDQLARLYVDKI+SQYGVPVSI S RD RFTSK WP L KAMGTGLKFSTSFHP TDG+SE+TIQ LEDMLRACVLQLKGSWDTHLPLMEFAYNN Y+S
Subjt:  TLDQLARLYVDKIMSQYGVPVSIASYRDSRFTSKIWPCLHKAMGTGLKFSTSFHPHTDGKSEKTIQALEDMLRACVLQLKGSWDTHLPLMEFAYNNIYKS

Query:  SIDMVPYEALYGRPCRTSVCWHEVGERKLVGPKLVQVTINNIKLIRKNLRIAQDR
        SI M PYEALYGRPCRT VCW+EVGERKLVGP+LVQ+T NNIKLIR+NLR AQDR
Subjt:  SIDMVPYEALYGRPCRTSVCWHEVGERKLVGPKLVQVTINNIKLIRKNLRIAQDR

KAA0058337.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.3e-134100Show/hide
Query:  STEMYRTLKKTYWWPRMKQEIVEYVDRCLICQQLKLVRRRPEGFFNPFPLPEWKWEHITTDFLFGLPRTSNGHDGIWVIIDRLTKTTQFIPVKATFTLDQ
        STEMYRTLKKTYWWPRMKQEIVEYVDRCLICQQLKLVRRRPEGFFNPFPLPEWKWEHITTDFLFGLPRTSNGHDGIWVIIDRLTKTTQFIPVKATFTLDQ
Subjt:  STEMYRTLKKTYWWPRMKQEIVEYVDRCLICQQLKLVRRRPEGFFNPFPLPEWKWEHITTDFLFGLPRTSNGHDGIWVIIDRLTKTTQFIPVKATFTLDQ

Query:  LARLYVDKIMSQYGVPVSIASYRDSRFTSKIWPCLHKAMGTGLKFSTSFHPHTDGKSEKTIQALEDMLRACVLQLKGSWDTHLPLMEFAYNNIYKSSIDM
        LARLYVDKIMSQYGVPVSIASYRDSRFTSKIWPCLHKAMGTGLKFSTSFHPHTDGKSEKTIQALEDMLRACVLQLKGSWDTHLPLMEFAYNNIYKSSIDM
Subjt:  LARLYVDKIMSQYGVPVSIASYRDSRFTSKIWPCLHKAMGTGLKFSTSFHPHTDGKSEKTIQALEDMLRACVLQLKGSWDTHLPLMEFAYNNIYKSSIDM

Query:  VPYEALYGRPCRTSVCWHEVGERKLV
        VPYEALYGRPCRTSVCWHEVGERKLV
Subjt:  VPYEALYGRPCRTSVCWHEVGERKLV

TYK22484.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.3e-134100Show/hide
Query:  STEMYRTLKKTYWWPRMKQEIVEYVDRCLICQQLKLVRRRPEGFFNPFPLPEWKWEHITTDFLFGLPRTSNGHDGIWVIIDRLTKTTQFIPVKATFTLDQ
        STEMYRTLKKTYWWPRMKQEIVEYVDRCLICQQLKLVRRRPEGFFNPFPLPEWKWEHITTDFLFGLPRTSNGHDGIWVIIDRLTKTTQFIPVKATFTLDQ
Subjt:  STEMYRTLKKTYWWPRMKQEIVEYVDRCLICQQLKLVRRRPEGFFNPFPLPEWKWEHITTDFLFGLPRTSNGHDGIWVIIDRLTKTTQFIPVKATFTLDQ

Query:  LARLYVDKIMSQYGVPVSIASYRDSRFTSKIWPCLHKAMGTGLKFSTSFHPHTDGKSEKTIQALEDMLRACVLQLKGSWDTHLPLMEFAYNNIYKSSIDM
        LARLYVDKIMSQYGVPVSIASYRDSRFTSKIWPCLHKAMGTGLKFSTSFHPHTDGKSEKTIQALEDMLRACVLQLKGSWDTHLPLMEFAYNNIYKSSIDM
Subjt:  LARLYVDKIMSQYGVPVSIASYRDSRFTSKIWPCLHKAMGTGLKFSTSFHPHTDGKSEKTIQALEDMLRACVLQLKGSWDTHLPLMEFAYNNIYKSSIDM

Query:  VPYEALYGRPCRTSVCWHEVGERKLV
        VPYEALYGRPCRTSVCWHEVGERKLV
Subjt:  VPYEALYGRPCRTSVCWHEVGERKLV

TrEMBL top hitse value%identityAlignment
A0A5A7SX06 DNA/RNA polymerases superfamily protein4.0e-12683.53Show/hide
Query:  MHLGSTEMYRTLKKTYWWPRMKQEIVEYVDRCLICQQLKLVRRRPEGFFNPFPLPEWKWEHITTDFLFGLPRTSNGHDGIWVIIDRLTKTTQFIPVKATF
        MH GST+MYRTLKKTYWW  MKQEI EYVDRCLICQQ+K VR+RPEGF NP P+PEWKWEHIT DFLFGLPRTS+GHDGIWVI+DRLTKTT+FIP+K T 
Subjt:  MHLGSTEMYRTLKKTYWWPRMKQEIVEYVDRCLICQQLKLVRRRPEGFFNPFPLPEWKWEHITTDFLFGLPRTSNGHDGIWVIIDRLTKTTQFIPVKATF

Query:  TLDQLARLYVDKIMSQYGVPVSIASYRDSRFTSKIWPCLHKAMGTGLKFSTSFHPHTDGKSEKTIQALEDMLRACVLQLKGSWDTHLPLMEFAYNNIYKS
        TLDQLARLYVDKI+SQY VPVSI S RD RFTSK WP L KAMGTGLKFSTSFHP TDG+SE+T+Q LEDMLRACVLQLKGSWDTHLPLMEF YNN Y+S
Subjt:  TLDQLARLYVDKIMSQYGVPVSIASYRDSRFTSKIWPCLHKAMGTGLKFSTSFHPHTDGKSEKTIQALEDMLRACVLQLKGSWDTHLPLMEFAYNNIYKS

Query:  SIDMVPYEALYGRPCRTSVCWHEVGERKLVGPKLVQVTINNIKLIRKNLRIAQDR
        SI M PYEALYGRPCRT VCW+EVGERKLVGP+LVQ+T NNIKLIR+NLRIAQDR
Subjt:  SIDMVPYEALYGRPCRTSVCWHEVGERKLVGPKLVQVTINNIKLIRKNLRIAQDR

A0A5A7T7W9 Reverse transcriptase1.8e-12684.31Show/hide
Query:  MHLGSTEMYRTLKKTYWWPRMKQEIVEYVDRCLICQQLKLVRRRPEGFFNPFPLPEWKWEHITTDFLFGLPRTSNGHDGIWVIIDRLTKTTQFIPVKATF
        MH GST+MYRTLKKTYWW  MKQEI EYVDRCLICQQ+KLVR+RP GF NP PLPEWKWEHIT DFLFGLPRTS+GHDGIWVI+DRLTK T+FIP+K T 
Subjt:  MHLGSTEMYRTLKKTYWWPRMKQEIVEYVDRCLICQQLKLVRRRPEGFFNPFPLPEWKWEHITTDFLFGLPRTSNGHDGIWVIIDRLTKTTQFIPVKATF

Query:  TLDQLARLYVDKIMSQYGVPVSIASYRDSRFTSKIWPCLHKAMGTGLKFSTSFHPHTDGKSEKTIQALEDMLRACVLQLKGSWDTHLPLMEFAYNNIYKS
        TLDQLARLYVDKI+SQYGVPVSI S RD RFTSK WP L KAMGTGLKFSTSFHP TDG+SE+TIQ LEDMLRACVLQLKGSWDTHLPLMEFAYNN Y+S
Subjt:  TLDQLARLYVDKIMSQYGVPVSIASYRDSRFTSKIWPCLHKAMGTGLKFSTSFHPHTDGKSEKTIQALEDMLRACVLQLKGSWDTHLPLMEFAYNNIYKS

Query:  SIDMVPYEALYGRPCRTSVCWHEVGERKLVGPKLVQVTINNIKLIRKNLRIAQDR
        SI M PYEALYGRPCRT VCW+EVGERKLVGP+LVQ+T NNIKLIR+NLR AQDR
Subjt:  SIDMVPYEALYGRPCRTSVCWHEVGERKLVGPKLVQVTINNIKLIRKNLRIAQDR

A0A5A7U2V7 Reverse transcriptase5.2e-12683.92Show/hide
Query:  MHLGSTEMYRTLKKTYWWPRMKQEIVEYVDRCLICQQLKLVRRRPEGFFNPFPLPEWKWEHITTDFLFGLPRTSNGHDGIWVIIDRLTKTTQFIPVKATF
        MH GST+MYRTLKKTYWW  MKQEI EYVDRCLICQQ+K VR+RP GF NP P+PEWKWEHIT DFLFGLPRTS+GHDGIWVI+DRLTKTT+FIP+K T 
Subjt:  MHLGSTEMYRTLKKTYWWPRMKQEIVEYVDRCLICQQLKLVRRRPEGFFNPFPLPEWKWEHITTDFLFGLPRTSNGHDGIWVIIDRLTKTTQFIPVKATF

Query:  TLDQLARLYVDKIMSQYGVPVSIASYRDSRFTSKIWPCLHKAMGTGLKFSTSFHPHTDGKSEKTIQALEDMLRACVLQLKGSWDTHLPLMEFAYNNIYKS
        TLDQLARLYVDKI+SQYGVPVSI S RD RFTSK WP L KAMGTGLKFSTSFHP TDG+SE+TIQ LEDMLRACVLQLKGSWDTHLPLMEFAYNN Y+S
Subjt:  TLDQLARLYVDKIMSQYGVPVSIASYRDSRFTSKIWPCLHKAMGTGLKFSTSFHPHTDGKSEKTIQALEDMLRACVLQLKGSWDTHLPLMEFAYNNIYKS

Query:  SIDMVPYEALYGRPCRTSVCWHEVGERKLVGPKLVQVTINNIKLIRKNLRIAQDR
        SI M PYEALYGRPCRT VCW+EVGERKLVGP+LVQ+T NNIKLIR+NLR AQDR
Subjt:  SIDMVPYEALYGRPCRTSVCWHEVGERKLVGPKLVQVTINNIKLIRKNLRIAQDR

A0A5A7UUC2 DNA/RNA polymerases superfamily protein3.1e-134100Show/hide
Query:  STEMYRTLKKTYWWPRMKQEIVEYVDRCLICQQLKLVRRRPEGFFNPFPLPEWKWEHITTDFLFGLPRTSNGHDGIWVIIDRLTKTTQFIPVKATFTLDQ
        STEMYRTLKKTYWWPRMKQEIVEYVDRCLICQQLKLVRRRPEGFFNPFPLPEWKWEHITTDFLFGLPRTSNGHDGIWVIIDRLTKTTQFIPVKATFTLDQ
Subjt:  STEMYRTLKKTYWWPRMKQEIVEYVDRCLICQQLKLVRRRPEGFFNPFPLPEWKWEHITTDFLFGLPRTSNGHDGIWVIIDRLTKTTQFIPVKATFTLDQ

Query:  LARLYVDKIMSQYGVPVSIASYRDSRFTSKIWPCLHKAMGTGLKFSTSFHPHTDGKSEKTIQALEDMLRACVLQLKGSWDTHLPLMEFAYNNIYKSSIDM
        LARLYVDKIMSQYGVPVSIASYRDSRFTSKIWPCLHKAMGTGLKFSTSFHPHTDGKSEKTIQALEDMLRACVLQLKGSWDTHLPLMEFAYNNIYKSSIDM
Subjt:  LARLYVDKIMSQYGVPVSIASYRDSRFTSKIWPCLHKAMGTGLKFSTSFHPHTDGKSEKTIQALEDMLRACVLQLKGSWDTHLPLMEFAYNNIYKSSIDM

Query:  VPYEALYGRPCRTSVCWHEVGERKLV
        VPYEALYGRPCRTSVCWHEVGERKLV
Subjt:  VPYEALYGRPCRTSVCWHEVGERKLV

A0A5D3DFV3 DNA/RNA polymerases superfamily protein3.1e-134100Show/hide
Query:  STEMYRTLKKTYWWPRMKQEIVEYVDRCLICQQLKLVRRRPEGFFNPFPLPEWKWEHITTDFLFGLPRTSNGHDGIWVIIDRLTKTTQFIPVKATFTLDQ
        STEMYRTLKKTYWWPRMKQEIVEYVDRCLICQQLKLVRRRPEGFFNPFPLPEWKWEHITTDFLFGLPRTSNGHDGIWVIIDRLTKTTQFIPVKATFTLDQ
Subjt:  STEMYRTLKKTYWWPRMKQEIVEYVDRCLICQQLKLVRRRPEGFFNPFPLPEWKWEHITTDFLFGLPRTSNGHDGIWVIIDRLTKTTQFIPVKATFTLDQ

Query:  LARLYVDKIMSQYGVPVSIASYRDSRFTSKIWPCLHKAMGTGLKFSTSFHPHTDGKSEKTIQALEDMLRACVLQLKGSWDTHLPLMEFAYNNIYKSSIDM
        LARLYVDKIMSQYGVPVSIASYRDSRFTSKIWPCLHKAMGTGLKFSTSFHPHTDGKSEKTIQALEDMLRACVLQLKGSWDTHLPLMEFAYNNIYKSSIDM
Subjt:  LARLYVDKIMSQYGVPVSIASYRDSRFTSKIWPCLHKAMGTGLKFSTSFHPHTDGKSEKTIQALEDMLRACVLQLKGSWDTHLPLMEFAYNNIYKSSIDM

Query:  VPYEALYGRPCRTSVCWHEVGERKLV
        VPYEALYGRPCRTSVCWHEVGERKLV
Subjt:  VPYEALYGRPCRTSVCWHEVGERKLV

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein2.1e-3130.33Show/hide
Query:  MHLGSTEMYRTLKKTYWWPRMKQEIVEYVDRCLICQQLKLVRRRPEGFFNPFPLPEWKWEHITTDFLFGLPRTSNGHDGIWVIIDRLTKTTQFIPVKATF
        +H G   +   + + + W  ++++I EYV  C  CQ  K    +P G   P P  E  WE ++ DF+  LP  S+G++ ++V++DR +K    +P   + 
Subjt:  MHLGSTEMYRTLKKTYWWPRMKQEIVEYVDRCLICQQLKLVRRRPEGFFNPFPLPEWKWEHITTDFLFGLPRTSNGHDGIWVIIDRLTKTTQFIPVKATF

Query:  TLDQLARLYVDKIMSQYGVPVSIASYRDSRFTSKIWPCLHKAMGTGLKFSTSFHPHTDGKSEKTIQALEDMLRACVLQLKGSWDTHLPLMEFAYNNIYKS
        T +Q AR++  ++++ +G P  I +  D  FTS+ W          +KFS  + P TDG++E+T Q +E +LR        +W  H+ L++ +YNN   S
Subjt:  TLDQLARLYVDKIMSQYGVPVSIASYRDSRFTSKIWPCLHKAMGTGLKFSTSFHPHTDGKSEKTIQALEDMLRACVLQLKGSWDTHLPLMEFAYNNIYKS

Query:  SIDMVPYEALY
        +  M P+E ++
Subjt:  SIDMVPYEALY

P0CT41 Transposon Tf2-12 polyprotein2.1e-3130.33Show/hide
Query:  MHLGSTEMYRTLKKTYWWPRMKQEIVEYVDRCLICQQLKLVRRRPEGFFNPFPLPEWKWEHITTDFLFGLPRTSNGHDGIWVIIDRLTKTTQFIPVKATF
        +H G   +   + + + W  ++++I EYV  C  CQ  K    +P G   P P  E  WE ++ DF+  LP  S+G++ ++V++DR +K    +P   + 
Subjt:  MHLGSTEMYRTLKKTYWWPRMKQEIVEYVDRCLICQQLKLVRRRPEGFFNPFPLPEWKWEHITTDFLFGLPRTSNGHDGIWVIIDRLTKTTQFIPVKATF

Query:  TLDQLARLYVDKIMSQYGVPVSIASYRDSRFTSKIWPCLHKAMGTGLKFSTSFHPHTDGKSEKTIQALEDMLRACVLQLKGSWDTHLPLMEFAYNNIYKS
        T +Q AR++  ++++ +G P  I +  D  FTS+ W          +KFS  + P TDG++E+T Q +E +LR        +W  H+ L++ +YNN   S
Subjt:  TLDQLARLYVDKIMSQYGVPVSIASYRDSRFTSKIWPCLHKAMGTGLKFSTSFHPHTDGKSEKTIQALEDMLRACVLQLKGSWDTHLPLMEFAYNNIYKS

Query:  SIDMVPYEALY
        +  M P+E ++
Subjt:  SIDMVPYEALY

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein2.8e-3637.2Show/hide
Query:  HLGSTEMYRTLKKTYWWPRMKQEIVEYVDRCLICQQLKLVRRRPEGFFNPFPLPEWKWEHITTDFLFGLPRTSNGHDGIWVIIDRLTKTTQFIPVKATFT
        H G T     +   Y+WP+++  I++Y+  C+ CQ +K  R R  G   P P+ E +W  I+ DF+ GLP TSN  + I V++DR +K   FI  + T  
Subjt:  HLGSTEMYRTLKKTYWWPRMKQEIVEYVDRCLICQQLKLVRRRPEGFFNPFPLPEWKWEHITTDFLFGLPRTSNGHDGIWVIIDRLTKTTQFIPVKATFT

Query:  LDQLARLYVDKIMSQYGVPVSIASYRDSRFTSKIWPCLHKAMGTGLKFSTSFHPHTDGKSEKTIQALEDMLRACVLQLKGSWDTHLPLMEFAYNNIYKSS
          QL  L    I S +G P +I S RD R T+  +  L K +G     S++ HP TDG+SE+TIQ L  +LRA V     +W  +LP +EF YN+    +
Subjt:  LDQLARLYVDKIMSQYGVPVSIASYRDSRFTSKIWPCLHKAMGTGLKFSTSFHPHTDGKSEKTIQALEDMLRACVLQLKGSWDTHLPLMEFAYNNIYKSS

Query:  IDMVPYE
        +   P+E
Subjt:  IDMVPYE

Q99315 Transposon Ty3-G Gag-Pol polyprotein8.3e-3636.71Show/hide
Query:  HLGSTEMYRTLKKTYWWPRMKQEIVEYVDRCLICQQLKLVRRRPEGFFNPFPLPEWKWEHITTDFLFGLPRTSNGHDGIWVIIDRLTKTTQFIPVKATFT
        H G T     +   Y+WP+++  I++Y+  C+ CQ +K  R R  G   P P+ E +W  I+ DF+ GLP TSN  + I V++DR +K   FI  + T  
Subjt:  HLGSTEMYRTLKKTYWWPRMKQEIVEYVDRCLICQQLKLVRRRPEGFFNPFPLPEWKWEHITTDFLFGLPRTSNGHDGIWVIIDRLTKTTQFIPVKATFT

Query:  LDQLARLYVDKIMSQYGVPVSIASYRDSRFTSKIWPCLHKAMGTGLKFSTSFHPHTDGKSEKTIQALEDMLRACVLQLKGSWDTHLPLMEFAYNNIYKSS
          QL  L    I S +G P +I S RD R T+  +  L K +G     S++ HP TDG+SE+TIQ L  +LRA       +W  +LP +EF YN+    +
Subjt:  LDQLARLYVDKIMSQYGVPVSIASYRDSRFTSKIWPCLHKAMGTGLKFSTSFHPHTDGKSEKTIQALEDMLRACVLQLKGSWDTHLPLMEFAYNNIYKSS

Query:  IDMVPYE
        +   P+E
Subjt:  IDMVPYE

Q9UR07 Transposon Tf2-11 polyprotein2.1e-3130.33Show/hide
Query:  MHLGSTEMYRTLKKTYWWPRMKQEIVEYVDRCLICQQLKLVRRRPEGFFNPFPLPEWKWEHITTDFLFGLPRTSNGHDGIWVIIDRLTKTTQFIPVKATF
        +H G   +   + + + W  ++++I EYV  C  CQ  K    +P G   P P  E  WE ++ DF+  LP  S+G++ ++V++DR +K    +P   + 
Subjt:  MHLGSTEMYRTLKKTYWWPRMKQEIVEYVDRCLICQQLKLVRRRPEGFFNPFPLPEWKWEHITTDFLFGLPRTSNGHDGIWVIIDRLTKTTQFIPVKATF

Query:  TLDQLARLYVDKIMSQYGVPVSIASYRDSRFTSKIWPCLHKAMGTGLKFSTSFHPHTDGKSEKTIQALEDMLRACVLQLKGSWDTHLPLMEFAYNNIYKS
        T +Q AR++  ++++ +G P  I +  D  FTS+ W          +KFS  + P TDG++E+T Q +E +LR        +W  H+ L++ +YNN   S
Subjt:  TLDQLARLYVDKIMSQYGVPVSIASYRDSRFTSKIWPCLHKAMGTGLKFSTSFHPHTDGKSEKTIQALEDMLRACVLQLKGSWDTHLPLMEFAYNNIYKS

Query:  SIDMVPYEALY
        +  M P+E ++
Subjt:  SIDMVPYEALY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATCTAGGTAGCACCGAGATGTACAGAACATTAAAGAAGACTTATTGGTGGCCTAGAATGAAGCAAGAGATAGTTGAATATGTTGATAGATGTTTGATTTGTCAACA
GCTTAAACTAGTGAGACGGAGGCCAGAAGGATTTTTTAATCCTTTTCCATTGCCAGAGTGGAAATGGGAGCATATTACTACGGATTTCCTATTTGGATTACCTCGTACAT
CCAATGGACATGATGGTATATGGGTAATAATAGACAGACTCACCAAGACGACACAATTTATACCGGTTAAAGCGACATTTACGTTAGACCAGCTAGCTAGATTATATGTC
GATAAGATTATGAGTCAGTATGGAGTACCAGTGTCCATAGCTTCATATAGGGATTCGAGGTTTACTTCTAAAATTTGGCCTTGTTTGCATAAAGCAATGGGGACAGGGCT
AAAGTTTAGTACATCATTTCATCCCCACACAGATGGTAAGTCTGAGAAGACCATCCAAGCTTTAGAGGACATGTTGAGAGCATGTGTCCTTCAACTTAAAGGAAGTTGGG
ATACTCACTTGCCACTTATGGAGTTTGCTTATAATAATATTTATAAGTCTAGTATCGATATGGTACCATATGAGGCCTTATACGGCAGACCATGCAGAACTTCTGTGTGC
TGGCATGAAGTGGGAGAGCGGAAATTAGTAGGTCCTAAATTGGTTCAGGTTACGATAAACAATATTAAGTTAATCAGAAAAAACCTGAGGATAGCCCAAGATCGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCATCTAGGTAGCACCGAGATGTACAGAACATTAAAGAAGACTTATTGGTGGCCTAGAATGAAGCAAGAGATAGTTGAATATGTTGATAGATGTTTGATTTGTCAACA
GCTTAAACTAGTGAGACGGAGGCCAGAAGGATTTTTTAATCCTTTTCCATTGCCAGAGTGGAAATGGGAGCATATTACTACGGATTTCCTATTTGGATTACCTCGTACAT
CCAATGGACATGATGGTATATGGGTAATAATAGACAGACTCACCAAGACGACACAATTTATACCGGTTAAAGCGACATTTACGTTAGACCAGCTAGCTAGATTATATGTC
GATAAGATTATGAGTCAGTATGGAGTACCAGTGTCCATAGCTTCATATAGGGATTCGAGGTTTACTTCTAAAATTTGGCCTTGTTTGCATAAAGCAATGGGGACAGGGCT
AAAGTTTAGTACATCATTTCATCCCCACACAGATGGTAAGTCTGAGAAGACCATCCAAGCTTTAGAGGACATGTTGAGAGCATGTGTCCTTCAACTTAAAGGAAGTTGGG
ATACTCACTTGCCACTTATGGAGTTTGCTTATAATAATATTTATAAGTCTAGTATCGATATGGTACCATATGAGGCCTTATACGGCAGACCATGCAGAACTTCTGTGTGC
TGGCATGAAGTGGGAGAGCGGAAATTAGTAGGTCCTAAATTGGTTCAGGTTACGATAAACAATATTAAGTTAATCAGAAAAAACCTGAGGATAGCCCAAGATCGGTAG
Protein sequenceShow/hide protein sequence
MHLGSTEMYRTLKKTYWWPRMKQEIVEYVDRCLICQQLKLVRRRPEGFFNPFPLPEWKWEHITTDFLFGLPRTSNGHDGIWVIIDRLTKTTQFIPVKATFTLDQLARLYV
DKIMSQYGVPVSIASYRDSRFTSKIWPCLHKAMGTGLKFSTSFHPHTDGKSEKTIQALEDMLRACVLQLKGSWDTHLPLMEFAYNNIYKSSIDMVPYEALYGRPCRTSVC
WHEVGERKLVGPKLVQVTINNIKLIRKNLRIAQDR