; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc11g0285941 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc11g0285941
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationCMiso1.1chr11:1290733..1291131
RNA-Seq ExpressionCmc11g0285941
SyntenyCmc11g0285941
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042448.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.3e-4570.23Show/hide
Query:  LDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHLS
        LD +FALKDLG L YFLGFQ++YLES FI+N+EKY+  LLHK QL DLKPAPSPS +GK+LS   G PLED F+Y++T GALQYLTNTR DI+YIVN LS
Subjt:  LDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHLS

Query:  QFLQKPTGLPWQAVKRVLRYISGTKHYDILF
        QFLQKPT L W+AVKRVL+Y+SGTK + ++F
Subjt:  QFLQKPTGLPWQAVKRVLRYISGTKHYDILF

KAA0045871.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.8e-6089.63Show/hide
Query:  MLDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHL
        MLDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSITNGIPLED FIYQSTFGALQYLTNTRLDISYIVNHL
Subjt:  MLDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHL

Query:  SQFLQKPTGLPWQAVKR-----VLRYISGTKHYDI
        SQFLQKPTGLPWQAVKR      L + + TKH +I
Subjt:  SQFLQKPTGLPWQAVKR-----VLRYISGTKHYDI

KAA0057477.1 Copia protein [Cucumis melo var. makuwa]8.8e-5583.33Show/hide
Query:  MLDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHL
        MLD KFALKDLGPLHYFL FQIHYLES FIMN+EKY++ LLHK QLTDLKPA SPSVLGK LSI++GIPL+D F+YQST  ALQYLTNTR +ISYIVNHL
Subjt:  MLDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHL

Query:  SQFLQKPTGLPWQAVKRVLRYISGTKHYDILF
        SQFLQKPT L WQAVKRVLRYISGTKHY ILF
Subjt:  SQFLQKPTGLPWQAVKRVLRYISGTKHYDILF

TYK13717.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.8e-6089.63Show/hide
Query:  MLDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHL
        MLDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSITNGIPLED FIYQSTFGALQYLTNTRLDISYIVNHL
Subjt:  MLDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHL

Query:  SQFLQKPTGLPWQAVKR-----VLRYISGTKHYDI
        SQFLQKPTGLPWQAVKR      L + + TKH +I
Subjt:  SQFLQKPTGLPWQAVKR-----VLRYISGTKHYDI

TYK30173.1 Copia protein [Cucumis melo var. makuwa]8.8e-5583.33Show/hide
Query:  MLDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHL
        MLD KFALKDLGPLHYFL FQIHYLES FIMN+EKY++ LLHK QLTDLKPA SPSVLGK LSI++GIPL+D F+YQST  ALQYLTNTR +ISYIVNHL
Subjt:  MLDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHL

Query:  SQFLQKPTGLPWQAVKRVLRYISGTKHYDILF
        SQFLQKPT L WQAVKRVLRYISGTKHY ILF
Subjt:  SQFLQKPTGLPWQAVKRVLRYISGTKHYDILF

TrEMBL top hitse value%identityAlignment
A0A5A7TWM4 Putative mitochondrial protein8.9e-6189.63Show/hide
Query:  MLDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHL
        MLDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSITNGIPLED FIYQSTFGALQYLTNTRLDISYIVNHL
Subjt:  MLDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHL

Query:  SQFLQKPTGLPWQAVKR-----VLRYISGTKHYDI
        SQFLQKPTGLPWQAVKR      L + + TKH +I
Subjt:  SQFLQKPTGLPWQAVKR-----VLRYISGTKHYDI

A0A5A7US38 Copia protein4.3e-5583.33Show/hide
Query:  MLDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHL
        MLD KFALKDLGPLHYFL FQIHYLES FIMN+EKY++ LLHK QLTDLKPA SPSVLGK LSI++GIPL+D F+YQST  ALQYLTNTR +ISYIVNHL
Subjt:  MLDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHL

Query:  SQFLQKPTGLPWQAVKRVLRYISGTKHYDILF
        SQFLQKPT L WQAVKRVLRYISGTKHY ILF
Subjt:  SQFLQKPTGLPWQAVKRVLRYISGTKHYDILF

A0A5D3BWM8 Putative mitochondrial protein6.2e-4670.23Show/hide
Query:  LDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHLS
        LD +FALKDLG L YFLGFQ++YLES FI+N+EKY+  LLHK QL DLKPAPSPS +GK+LS   G PLED F+Y++T GALQYLTNTR DI+YIVN LS
Subjt:  LDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHLS

Query:  QFLQKPTGLPWQAVKRVLRYISGTKHYDILF
        QFLQKPT L W+AVKRVL+Y+SGTK + ++F
Subjt:  QFLQKPTGLPWQAVKRVLRYISGTKHYDILF

A0A5D3CP94 Putative mitochondrial protein8.9e-6189.63Show/hide
Query:  MLDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHL
        MLDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSITNGIPLED FIYQSTFGALQYLTNTRLDISYIVNHL
Subjt:  MLDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHL

Query:  SQFLQKPTGLPWQAVKR-----VLRYISGTKHYDI
        SQFLQKPTGLPWQAVKR      L + + TKH +I
Subjt:  SQFLQKPTGLPWQAVKR-----VLRYISGTKHYDI

A0A5D3E251 Copia protein4.3e-5583.33Show/hide
Query:  MLDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHL
        MLD KFALKDLGPLHYFL FQIHYLES FIMN+EKY++ LLHK QLTDLKPA SPSVLGK LSI++GIPL+D F+YQST  ALQYLTNTR +ISYIVNHL
Subjt:  MLDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHL

Query:  SQFLQKPTGLPWQAVKRVLRYISGTKHYDILF
        SQFLQKPT L WQAVKRVLRYISGTKHY ILF
Subjt:  SQFLQKPTGLPWQAVKRVLRYISGTKHYDILF

SwissProt top hitse value%identityAlignment
P04146 Copia protein9.9e-0930Show/hide
Query:  KFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSITNGIPLEDLFI-YQSTFGALQY-LTNTRLDISYIVNHLSQ
        KF + DL  + +F+G +I   E +  +++  YV+ +L K  + +     +P     +  + N    ED     +S  G L Y +  TR D++  VN LS+
Subjt:  KFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSITNGIPLEDLFI-YQSTFGALQY-LTNTRLDISYIVNHLSQ

Query:  FLQKPTGLPWQAVKRVLRYISGTKHYDILF
        +  K     WQ +KRVLRY+ GT    ++F
Subjt:  FLQKPTGLPWQAVKRVLRYISGTKHYDILF

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-944.8e-1133.33Show/hide
Query:  LDVKFALKDLGPLHYFLGFQI--HYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSITNGI---PLED-----LFIYQSTFGALQY-LTNTR
        L   F +KDLGP    LG +I       +  +++EKY+E +L +  + + KP  +P  L  HL ++  +    +E+        Y S  G+L Y +  TR
Subjt:  LDVKFALKDLGPLHYFLGFQI--HYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSITNGI---PLED-----LFIYQSTFGALQY-LTNTR

Query:  LDISYIVNHLSQFLQKPTGLPWQAVKRVLRYISGT
         DI++ V  +S+FL+ P    W+AVK +LRY+ GT
Subjt:  LDISYIVNHLSQFLQKPTGLPWQAVKRVLRYISGT

P92519 Uncharacterized mitochondrial protein AtMg008102.1e-1942.74Show/hide
Query:  LDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHLS
        L   F++KDLGP+HYFLG QI    S   +++ KY E +L+   + D KP  +P  L  + S++      D   ++S  GALQYLT TR DISY VN + 
Subjt:  LDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHLS

Query:  QFLQKPTGLPWQAVKRVLRYISGT
        Q + +PT   +  +KRVLRY+ GT
Subjt:  QFLQKPTGLPWQAVKRVLRYISGT

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE14.3e-2039.53Show/hide
Query:  LDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHLS
        L  +F++KD   LHYFLG +   + +   +++ +Y+  LL +  +   KP  +P      LS+ +G  L D   Y+   G+LQYL  TR DISY VN LS
Subjt:  LDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHLS

Query:  QFLQKPTGLPWQAVKRVLRYISGTKHYDI
        QF+  PT    QA+KR+LRY++GT ++ I
Subjt:  QFLQKPTGLPWQAVKRVLRYISGTKHYDI

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE22.8e-1937.21Show/hide
Query:  LDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHLS
        L  +F++K+   LHYFLG +   +     +++ +Y   LL +  +   KP  +P      L++ +G  L D   Y+   G+LQYL  TR D+SY VN LS
Subjt:  LDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHLS

Query:  QFLQKPTGLPWQAVKRVLRYISGTKHYDI
        Q++  PT   W A+KRVLRY++GT  + I
Subjt:  QFLQKPTGLPWQAVKRVLRYISGTKHYDI

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 86.6e-1640.83Show/hide
Query:  FALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHLSQFLQ
        F L+DLGPL YFLG +I    +   + + KY   LL +  L   KP+  P       S  +G    D   Y+   G L YL  TRLDIS+ VN LSQF +
Subjt:  FALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHLSQFLQ

Query:  KPTGLPWQAVKRVLRYISGT
         P     QAV ++L YI GT
Subjt:  KPTGLPWQAVKRVLRYISGT

ATMG00240.1 Gag-Pol-related retrotransposon family protein5.8e-0448.78Show/hide
Query:  YLTNTRLDISYIVNHLSQFLQKPTGLPWQAVKRVLRYISGT
        YLT TR D+++ VN LSQF         QAV +VL Y+ GT
Subjt:  YLTNTRLDISYIVNHLSQFLQKPTGLPWQAVKRVLRYISGT

ATMG00810.1 DNA/RNA polymerases superfamily protein1.5e-2042.74Show/hide
Query:  LDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHLS
        L   F++KDLGP+HYFLG QI    S   +++ KY E +L+   + D KP  +P  L  + S++      D   ++S  GALQYLT TR DISY VN + 
Subjt:  LDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHLS

Query:  QFLQKPTGLPWQAVKRVLRYISGT
        Q + +PT   +  +KRVLRY+ GT
Subjt:  QFLQKPTGLPWQAVKRVLRYISGT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGATGTTAAATTTGCTTTAAAGGACCTTGGGCCTCTGCACTATTTTCTTGGATTTCAAATTCATTATCTTGAGTCCGAATTTATTATGAATAAAGAAAAGTACGT
TGAAGGCTTGCTTCATAAGCATCAGCTCACTGACTTAAAACCAGCACCGTCCCCGAGTGTCCTAGGCAAGCATTTATCCATTACTAATGGCATACCTTTAGAGGATCTGT
TTATTTATCAAAGTACTTTTGGGGCTCTTCAGTATCTCACTAATACTCGACTAGACATATCCTATATAGTAAATCACCTTAGTCAATTTTTGCAGAAACCTACTGGTCTT
CCTTGGCAGGCTGTTAAACGGGTACTTCGTTATATCAGTGGTACTAAGCATTATGACATTTTATTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGGATGTTAAATTTGCTTTAAAGGACCTTGGGCCTCTGCACTATTTTCTTGGATTTCAAATTCATTATCTTGAGTCCGAATTTATTATGAATAAAGAAAAGTACGT
TGAAGGCTTGCTTCATAAGCATCAGCTCACTGACTTAAAACCAGCACCGTCCCCGAGTGTCCTAGGCAAGCATTTATCCATTACTAATGGCATACCTTTAGAGGATCTGT
TTATTTATCAAAGTACTTTTGGGGCTCTTCAGTATCTCACTAATACTCGACTAGACATATCCTATATAGTAAATCACCTTAGTCAATTTTTGCAGAAACCTACTGGTCTT
CCTTGGCAGGCTGTTAAACGGGTACTTCGTTATATCAGTGGTACTAAGCATTATGACATTTTATTTTAA
Protein sequenceShow/hide protein sequence
MLDVKFALKDLGPLHYFLGFQIHYLESEFIMNKEKYVEGLLHKHQLTDLKPAPSPSVLGKHLSITNGIPLEDLFIYQSTFGALQYLTNTRLDISYIVNHLSQFLQKPTGL
PWQAVKRVLRYISGTKHYDILF