; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc11g0287921 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc11g0287921
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr11:2757189..2758232
RNA-Seq ExpressionCmc11g0287921
SyntenyCmc11g0287921
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR016197 - Chromo-like domain superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025848.1 pol protein [Cucumis melo var. makuwa]5.9e-19999.42Show/hide
Query:  MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTER
        MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTER

Query:  LNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVR
        LNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVR
Subjt:  LNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVR

Query:  RKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLSLPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVE
        RKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRL+LPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQ+SENLSYEEQPVE
Subjt:  RKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLSLPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVE

Query:  VLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
        VLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
Subjt:  VLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

KAA0031437.1 pol protein [Cucumis melo var. makuwa]5.9e-19999.42Show/hide
Query:  MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTER
        MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTER

Query:  LNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVR
        LNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVR
Subjt:  LNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVR

Query:  RKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLSLPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVE
        RKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRL+LPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQ+SENLSYEEQPVE
Subjt:  RKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLSLPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVE

Query:  VLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
        VLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
Subjt:  VLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

KAA0033825.1 pol protein [Cucumis melo var. makuwa]5.9e-19999.42Show/hide
Query:  MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTER
        MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTER

Query:  LNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVR
        LNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVR
Subjt:  LNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVR

Query:  RKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLSLPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVE
        RKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRL+LPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQ+SENLSYEEQPVE
Subjt:  RKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLSLPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVE

Query:  VLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
        VLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
Subjt:  VLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

TYK28368.1 pol protein [Cucumis melo var. makuwa]5.9e-19999.42Show/hide
Query:  MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTER
        MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTER

Query:  LNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVR
        LNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVR
Subjt:  LNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVR

Query:  RKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLSLPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVE
        RKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRL+LPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQ+SENLSYEEQPVE
Subjt:  RKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLSLPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVE

Query:  VLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
        VLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
Subjt:  VLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

TYK28422.1 pol protein [Cucumis melo var. makuwa]5.9e-19999.42Show/hide
Query:  MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTER
        MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTER

Query:  LNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVR
        LNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVR
Subjt:  LNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVR

Query:  RKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLSLPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVE
        RKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRL+LPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQ+SENLSYEEQPVE
Subjt:  RKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLSLPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVE

Query:  VLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
        VLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
Subjt:  VLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

TrEMBL top hitse value%identityAlignment
A0A5A7TEQ2 Reverse transcriptase2.8e-19999.42Show/hide
Query:  MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTER
        MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTER

Query:  LNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVR
        LNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVR
Subjt:  LNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVR

Query:  RKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLSLPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVE
        RKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRL+LPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQ+SENLSYEEQPVE
Subjt:  RKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLSLPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVE

Query:  VLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
        VLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
Subjt:  VLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

A0A5A7TSL0 Reverse transcriptase2.8e-19999.42Show/hide
Query:  MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTER
        MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTER

Query:  LNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVR
        LNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVR
Subjt:  LNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVR

Query:  RKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLSLPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVE
        RKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRL+LPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQ+SENLSYEEQPVE
Subjt:  RKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLSLPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVE

Query:  VLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
        VLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
Subjt:  VLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

A0A5A7U2S5 Pol protein2.8e-19999.42Show/hide
Query:  MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTER
        MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTER

Query:  LNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVR
        LNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVR
Subjt:  LNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVR

Query:  RKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLSLPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVE
        RKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRL+LPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQ+SENLSYEEQPVE
Subjt:  RKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLSLPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVE

Query:  VLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
        VLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
Subjt:  VLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

A0A5A7UBS1 Reverse transcriptase2.8e-19999.42Show/hide
Query:  MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTER
        MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTER

Query:  LNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVR
        LNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVR
Subjt:  LNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVR

Query:  RKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLSLPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVE
        RKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRL+LPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQ+SENLSYEEQPVE
Subjt:  RKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLSLPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVE

Query:  VLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
        VLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
Subjt:  VLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

A0A5D3CQB5 Reverse transcriptase2.8e-19999.42Show/hide
Query:  MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTER
        MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTER

Query:  LNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVR
        LNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVR
Subjt:  LNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVR

Query:  RKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLSLPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVE
        RKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRL+LPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQ+SENLSYEEQPVE
Subjt:  RKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLSLPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVE

Query:  VLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
        VLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
Subjt:  VLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein1.9e-3835.51Show/hide
Query:  MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTER
        MDFIT LP++  GY  ++VVVDR +K A  VP   + TA +  +++   ++   G P  II+D D  FTS+ WK         + FS  + PQTDGQTER
Subjt:  MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTER

Query:  LNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADV
         NQ +E +LR        +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T    Q ++  + T   + K Y D+
Subjt:  LNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADV

Query:  RRKDL-EFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLSLPPSFAAV-HDVFHISMLRKY
        + +++ EF+ GD+V +K     G L   K  KL+P F GPF +L++ GP  Y L LP S   +    FH+S L KY
Subjt:  RRKDL-EFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLSLPPSFAAV-HDVFHISMLRKY

P0CT35 Transposon Tf2-2 polyprotein1.9e-3835.51Show/hide
Query:  MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTER
        MDFIT LP++  GY  ++VVVDR +K A  VP   + TA +  +++   ++   G P  II+D D  FTS+ WK         + FS  + PQTDGQTER
Subjt:  MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTER

Query:  LNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADV
         NQ +E +LR        +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T    Q ++  + T   + K Y D+
Subjt:  LNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADV

Query:  RRKDL-EFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLSLPPSFAAV-HDVFHISMLRKY
        + +++ EF+ GD+V +K     G L   K  KL+P F GPF +L++ GP  Y L LP S   +    FH+S L KY
Subjt:  RRKDL-EFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLSLPPSFAAV-HDVFHISMLRKY

P0CT36 Transposon Tf2-3 polyprotein1.9e-3835.51Show/hide
Query:  MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTER
        MDFIT LP++  GY  ++VVVDR +K A  VP   + TA +  +++   ++   G P  II+D D  FTS+ WK         + FS  + PQTDGQTER
Subjt:  MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTER

Query:  LNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADV
         NQ +E +LR        +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T    Q ++  + T   + K Y D+
Subjt:  LNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADV

Query:  RRKDL-EFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLSLPPSFAAV-HDVFHISMLRKY
        + +++ EF+ GD+V +K     G L   K  KL+P F GPF +L++ GP  Y L LP S   +    FH+S L KY
Subjt:  RRKDL-EFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLSLPPSFAAV-HDVFHISMLRKY

P0CT41 Transposon Tf2-12 polyprotein1.9e-3835.51Show/hide
Query:  MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTER
        MDFIT LP++  GY  ++VVVDR +K A  VP   + TA +  +++   ++   G P  II+D D  FTS+ WK         + FS  + PQTDGQTER
Subjt:  MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTER

Query:  LNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADV
         NQ +E +LR        +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T    Q ++  + T   + K Y D+
Subjt:  LNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADV

Query:  RRKDL-EFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLSLPPSFAAV-HDVFHISMLRKY
        + +++ EF+ GD+V +K     G L   K  KL+P F GPF +L++ GP  Y L LP S   +    FH+S L KY
Subjt:  RRKDL-EFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLSLPPSFAAV-HDVFHISMLRKY

Q9UR07 Transposon Tf2-11 polyprotein1.9e-3835.51Show/hide
Query:  MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTER
        MDFIT LP++  GY  ++VVVDR +K A  VP   + TA +  +++   ++   G P  II+D D  FTS+ WK         + FS  + PQTDGQTER
Subjt:  MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTER

Query:  LNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADV
         NQ +E +LR        +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T    Q ++  + T   + K Y D+
Subjt:  LNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADV

Query:  RRKDL-EFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLSLPPSFAAV-HDVFHISMLRKY
        + +++ EF+ GD+V +K     G L   K  KL+P F GPF +L++ GP  Y L LP S   +    FH+S L KY
Subjt:  RRKDL-EFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLSLPPSFAAV-HDVFHISMLRKY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTTATTACGGGACTGCCCAAGACCCTAAGGGGCTACACGGTGATCTGGGTTGTGGTTGACAGACTCACGAAGTCGGCCCATTTCGTGCCAGGGAAATCCACTTA
CACTGCCAGTAAGTGGGGGCAGCTATATATGACAGAAATTGTGAGACTACATGGAGTACCCGTATCCATCATTTCAGACAGAGACGCCCGTTTCACATCGAAGTTCTGGA
AAGGACTTCAACTTGCATTAGGTACGAGGTTGGACTTCAGCACGGCATTCCACCCTCAGACTGATGGTCAGACAGAGAGATTGAACCAGATTTTGGAGGACATGCTGCGA
GCCTGCGTACTAGAATTTTCAGGAAGTTGGGACTCCCATCTGCATCTGATGGAGTTTGCCTATAACAACAGCTACCAGGCTACCATCGGTATGGCACCGTTCGAGGCTCT
GTATGGCAAGTGCTGTAGATCCCCTGTCTGCTGGGGCGAGGTTGGAGAGCAGAGGATGCTAGGCCCCGAGTTAGTGCAGACGACCAACGCAGCCATACAGAAGATCCGAG
CTCGTATGCTGACAGCCCAGAGCAGACAGAAGAGTTACGCTGATGTACGACGTAAGGACCTCGAGTTTGAAGTGGGAGATATGGTCTTTCTGAAGGTTGCACCCATGAAG
GGTGTTCTGAGGTTCGCGAAGAAGGGGAAGCTGAGTCCACGCTTCGTAGGGCCGTTCGAGATATTGGAGCGGATTGGCCCCGTGGCGTACCGCTTGTCGCTACCCCCATC
TTTTGCTGCAGTGCACGACGTATTCCATATCTCCATGCTGAGGAAATATGTCGCAGACCCAACACATGTGGTGGACTTCGAACCACTGCAGATTAGCGAGAACTTGAGCT
ACGAGGAGCAGCCTGTCGAGGTCTTGGCAAGGGAGGTCAAGAAGCTTCGCAGTCGAGAAATTCCACTGGTCAAAATCCTTTGGCAGAACCATGGAGTGGAAGAGGCTACG
TGGGAGAAAGAAGAGGATATGAGAGCCCAGTACCCCGAGCTGTTCGAGGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATTTTATTACGGGACTGCCCAAGACCCTAAGGGGCTACACGGTGATCTGGGTTGTGGTTGACAGACTCACGAAGTCGGCCCATTTCGTGCCAGGGAAATCCACTTA
CACTGCCAGTAAGTGGGGGCAGCTATATATGACAGAAATTGTGAGACTACATGGAGTACCCGTATCCATCATTTCAGACAGAGACGCCCGTTTCACATCGAAGTTCTGGA
AAGGACTTCAACTTGCATTAGGTACGAGGTTGGACTTCAGCACGGCATTCCACCCTCAGACTGATGGTCAGACAGAGAGATTGAACCAGATTTTGGAGGACATGCTGCGA
GCCTGCGTACTAGAATTTTCAGGAAGTTGGGACTCCCATCTGCATCTGATGGAGTTTGCCTATAACAACAGCTACCAGGCTACCATCGGTATGGCACCGTTCGAGGCTCT
GTATGGCAAGTGCTGTAGATCCCCTGTCTGCTGGGGCGAGGTTGGAGAGCAGAGGATGCTAGGCCCCGAGTTAGTGCAGACGACCAACGCAGCCATACAGAAGATCCGAG
CTCGTATGCTGACAGCCCAGAGCAGACAGAAGAGTTACGCTGATGTACGACGTAAGGACCTCGAGTTTGAAGTGGGAGATATGGTCTTTCTGAAGGTTGCACCCATGAAG
GGTGTTCTGAGGTTCGCGAAGAAGGGGAAGCTGAGTCCACGCTTCGTAGGGCCGTTCGAGATATTGGAGCGGATTGGCCCCGTGGCGTACCGCTTGTCGCTACCCCCATC
TTTTGCTGCAGTGCACGACGTATTCCATATCTCCATGCTGAGGAAATATGTCGCAGACCCAACACATGTGGTGGACTTCGAACCACTGCAGATTAGCGAGAACTTGAGCT
ACGAGGAGCAGCCTGTCGAGGTCTTGGCAAGGGAGGTCAAGAAGCTTCGCAGTCGAGAAATTCCACTGGTCAAAATCCTTTGGCAGAACCATGGAGTGGAAGAGGCTACG
TGGGAGAAAGAAGAGGATATGAGAGCCCAGTACCCCGAGCTGTTCGAGGATTAG
Protein sequenceShow/hide protein sequence
MDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLR
ACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMK
GVLRFAKKGKLSPRFVGPFEILERIGPVAYRLSLPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEAT
WEKEEDMRAQYPELFED