CuGenDBv2

Gene ID	Cmc11g0287981
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	DUF3414 domain-containing protein
Genome location	CMiso1.1chr11:2800245..2802187
RNA-Seq Expression	Cmc11g0287981
Synteny	Cmc11g0287981
Gene Ontology terms	GO:0017056 - structural constituent of nuclear pore (molecular function)
InterPro domains	IPR044840 - Nucleoporin Nup188

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0045699.1 nucleoporin NUP188-like protein [Cucumis melo var. makuwa]

9.1e-65

100

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Query:  MASSTSVDSSLWWDPFHPFLTELENVSLSSTELPPTLMKKMDDNHAWFVGTVSLFKKPNEKSRVALDSQEVKIGAHTLSIQPELKAKALKLSSYLCLDEV
        MASSTSVDSSLWWDPFHPFLTELENVSLSSTELPPTLMKKMDDNHAWFVGTVSLFKKPNEKSRVALDSQEVKIGAHTLSIQPELKAKALKLSSYLCLDEV
Subjt:  MASSTSVDSSLWWDPFHPFLTELENVSLSSTELPPTLMKKMDDNHAWFVGTVSLFKKPNEKSRVALDSQEVKIGAHTLSIQPELKAKALKLSSYLCLDEV

Query:  QSYILASRTIEHENVHENSPFEELLHM
        QSYILASRTIEHENVHENSPFEELLHM
Subjt:  QSYILASRTIEHENVHENSPFEELLHM

TYJ99584.1 DUF3414 domain-containing protein [Cucumis melo var. makuwa]

9.1e-65

100

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Query:  MASSTSVDSSLWWDPFHPFLTELENVSLSSTELPPTLMKKMDDNHAWFVGTVSLFKKPNEKSRVALDSQEVKIGAHTLSIQPELKAKALKLSSYLCLDEV
        MASSTSVDSSLWWDPFHPFLTELENVSLSSTELPPTLMKKMDDNHAWFVGTVSLFKKPNEKSRVALDSQEVKIGAHTLSIQPELKAKALKLSSYLCLDEV
Subjt:  MASSTSVDSSLWWDPFHPFLTELENVSLSSTELPPTLMKKMDDNHAWFVGTVSLFKKPNEKSRVALDSQEVKIGAHTLSIQPELKAKALKLSSYLCLDEV

Query:  QSYILASRTIEHENVHENSPFEELLHM
        QSYILASRTIEHENVHENSPFEELLHM
Subjt:  QSYILASRTIEHENVHENSPFEELLHM

XP_008457947.1 PREDICTED: uncharacterized protein LOC103497512 [Cucumis melo]

9.1e-65

100

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Query:  MASSTSVDSSLWWDPFHPFLTELENVSLSSTELPPTLMKKMDDNHAWFVGTVSLFKKPNEKSRVALDSQEVKIGAHTLSIQPELKAKALKLSSYLCLDEV
        MASSTSVDSSLWWDPFHPFLTELENVSLSSTELPPTLMKKMDDNHAWFVGTVSLFKKPNEKSRVALDSQEVKIGAHTLSIQPELKAKALKLSSYLCLDEV
Subjt:  MASSTSVDSSLWWDPFHPFLTELENVSLSSTELPPTLMKKMDDNHAWFVGTVSLFKKPNEKSRVALDSQEVKIGAHTLSIQPELKAKALKLSSYLCLDEV

Query:  QSYILASRTIEHENVHENSPFEELLHM
        QSYILASRTIEHENVHENSPFEELLHM
Subjt:  QSYILASRTIEHENVHENSPFEELLHM

XP_011649284.1 uncharacterized protein LOC101204633 [Cucumis sativus]

4.0e-60

93.7

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Query:  MASSTSVDSSLWWDPFHPFLTELENVSLSSTELPPTLMKKMDDNHAWFVGTVSLFKKPNEKSRVALDSQEVKIGAHTLSIQPELKAKALKLSSYLCLDEV
        M SSTSVDS LWWDPFHPFLTELENVSLSSTELPPTLMKK+D NHAWFVGTVSLFKKPNEKSRVAL+SQEVKIGAHTLSIQPELKAKALKLSSYLCLDEV
Subjt:  MASSTSVDSSLWWDPFHPFLTELENVSLSSTELPPTLMKKMDDNHAWFVGTVSLFKKPNEKSRVALDSQEVKIGAHTLSIQPELKAKALKLSSYLCLDEV

Query:  QSYILASRTIEHENVHENSPFEELLHM
        QSYILA+RTIEHENVHEN PF+ELLHM
Subjt:  QSYILASRTIEHENVHENSPFEELLHM

XP_038902764.1 uncharacterized protein LOC120089385 isoform X1 [Benincasa hispida]

1.3e-55

88.19

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Query:  MASSTSVDSSLWWDPFHPFLTELENVSLSSTELPPTLMKKMDDNHAWFVGTVSLFKKPNEKSRVALDSQEVKIGAHTLSIQPELKAKALKLSSYLCLDEV
        MA+STSVDSSLWWDPF P LTELENVSLSS ELPP LMKKMDDNHAWFV TVSLFKKPNEKSRVALDSQEVKIG+HTLSIQPELK KALKLSSYLCLDEV
Subjt:  MASSTSVDSSLWWDPFHPFLTELENVSLSSTELPPTLMKKMDDNHAWFVGTVSLFKKPNEKSRVALDSQEVKIGAHTLSIQPELKAKALKLSSYLCLDEV

Query:  QSYILASRTIEHENVHENSPFEELLHM
        QSYILA+RTI H+NV ENS F+EL HM
Subjt:  QSYILASRTIEHENVHENSPFEELLHM

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LPK9 Uncharacterized protein

1.9e-60

93.7

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Query:  MASSTSVDSSLWWDPFHPFLTELENVSLSSTELPPTLMKKMDDNHAWFVGTVSLFKKPNEKSRVALDSQEVKIGAHTLSIQPELKAKALKLSSYLCLDEV
        M SSTSVDS LWWDPFHPFLTELENVSLSSTELPPTLMKK+D NHAWFVGTVSLFKKPNEKSRVAL+SQEVKIGAHTLSIQPELKAKALKLSSYLCLDEV
Subjt:  MASSTSVDSSLWWDPFHPFLTELENVSLSSTELPPTLMKKMDDNHAWFVGTVSLFKKPNEKSRVALDSQEVKIGAHTLSIQPELKAKALKLSSYLCLDEV

Query:  QSYILASRTIEHENVHENSPFEELLHM
        QSYILA+RTIEHENVHEN PF+ELLHM
Subjt:  QSYILASRTIEHENVHENSPFEELLHM

A0A1S3C7B7 uncharacterized protein LOC103497512

4.4e-65

100

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Query:  MASSTSVDSSLWWDPFHPFLTELENVSLSSTELPPTLMKKMDDNHAWFVGTVSLFKKPNEKSRVALDSQEVKIGAHTLSIQPELKAKALKLSSYLCLDEV
        MASSTSVDSSLWWDPFHPFLTELENVSLSSTELPPTLMKKMDDNHAWFVGTVSLFKKPNEKSRVALDSQEVKIGAHTLSIQPELKAKALKLSSYLCLDEV
Subjt:  MASSTSVDSSLWWDPFHPFLTELENVSLSSTELPPTLMKKMDDNHAWFVGTVSLFKKPNEKSRVALDSQEVKIGAHTLSIQPELKAKALKLSSYLCLDEV

Query:  QSYILASRTIEHENVHENSPFEELLHM
        QSYILASRTIEHENVHENSPFEELLHM
Subjt:  QSYILASRTIEHENVHENSPFEELLHM

A0A5A7TWR3 Nucleoporin NUP188-like protein

4.4e-65

100

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Query:  MASSTSVDSSLWWDPFHPFLTELENVSLSSTELPPTLMKKMDDNHAWFVGTVSLFKKPNEKSRVALDSQEVKIGAHTLSIQPELKAKALKLSSYLCLDEV
        MASSTSVDSSLWWDPFHPFLTELENVSLSSTELPPTLMKKMDDNHAWFVGTVSLFKKPNEKSRVALDSQEVKIGAHTLSIQPELKAKALKLSSYLCLDEV
Subjt:  MASSTSVDSSLWWDPFHPFLTELENVSLSSTELPPTLMKKMDDNHAWFVGTVSLFKKPNEKSRVALDSQEVKIGAHTLSIQPELKAKALKLSSYLCLDEV

Query:  QSYILASRTIEHENVHENSPFEELLHM
        QSYILASRTIEHENVHENSPFEELLHM
Subjt:  QSYILASRTIEHENVHENSPFEELLHM

A0A5D3BKP2 DUF3414 domain-containing protein

4.4e-65

100

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Query:  MASSTSVDSSLWWDPFHPFLTELENVSLSSTELPPTLMKKMDDNHAWFVGTVSLFKKPNEKSRVALDSQEVKIGAHTLSIQPELKAKALKLSSYLCLDEV
        MASSTSVDSSLWWDPFHPFLTELENVSLSSTELPPTLMKKMDDNHAWFVGTVSLFKKPNEKSRVALDSQEVKIGAHTLSIQPELKAKALKLSSYLCLDEV
Subjt:  MASSTSVDSSLWWDPFHPFLTELENVSLSSTELPPTLMKKMDDNHAWFVGTVSLFKKPNEKSRVALDSQEVKIGAHTLSIQPELKAKALKLSSYLCLDEV

Query:  QSYILASRTIEHENVHENSPFEELLHM
        QSYILASRTIEHENVHENSPFEELLHM
Subjt:  QSYILASRTIEHENVHENSPFEELLHM

A0A6J1G6Y8 uncharacterized protein LOC111451342

8.1e-51

81.89

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Query:  MASSTSVDSSLWWDPFHPFLTELENVSLSSTELPPTLMKKMDDNHAWFVGTVSLFKKPNEKSRVALDSQEVKIGAHTLSIQPELKAKALKLSSYLCLDEV
        MA+STSVDSSLWWDPF   LTELENV LSS ELPP L+KK+DDN AWF+ TVSLFKKPNEKSR ALDSQE+KIGAHTLSIQ ELK KALKLSSYLCLDEV
Subjt:  MASSTSVDSSLWWDPFHPFLTELENVSLSSTELPPTLMKKMDDNHAWFVGTVSLFKKPNEKSRVALDSQEVKIGAHTLSIQPELKAKALKLSSYLCLDEV

Query:  QSYILASRTIEHENVHENSPFEELLHM
        QSYILA RT EHEN+  NSPF+ELLH+
Subjt:  QSYILASRTIEHENVHENSPFEELLHM

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G38760.1 Protein of unknown function (DUF3414)

5.2e-34

58.06

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Query:  MASSTSVDSSLWWDPFHPFLTELENVSLSSTELPPTLMKKMDDNHAWFVGTVSLFKKPNEKSRVALDSQEVKIGAHTLSIQPELKAKALKLSSYLCLDEV
        MA+  SVDSSLWWDPF   LT+LEN SLS  +LP  + KK+++NHAWFVGT+S+FK P+EKS+ AL+S  VKI  H L I+P+LK KAL++SS+L LDE+
Subjt:  MASSTSVDSSLWWDPFHPFLTELENVSLSSTELPPTLMKKMDDNHAWFVGTVSLFKKPNEKSRVALDSQEVKIGAHTLSIQPELKAKALKLSSYLCLDEV

Query:  QSYILASRTIEHENVHENSPFEEL
        QSYIL  R++E E    +S  +EL
Subjt:  QSYILASRTIEHENVHENSPFEEL

Sequences

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CDS sequence

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ATGGCTTCCTCCACTTCAGTCGATTCGTCTCTTTGGTGGGATCCTTTCCATCCGTTTCTTACCGAGCTCGAAAATGTTTCCCTCTCATCTACAGAACTTCCTCCT
ACGCTGATGAAAAAGATGGATGACAACCATGCTTGGTTCGTGGGTACAGTTTCACTCTTTAAGAAACCGAATGAGAAATCAAGGGTGGCTTTAGATTCTCAGGAA
GTTAAAATTGGAGCTCACACGCTATCTATACAACCTGAGCTTAAAGCTAAAGCCCTCAAGTTGAGCTCTTATTTGTGTTTGGATGAGGTCCAATCGTACATTCTG
GCTTCTAGAACCATTGAACATGAGAATGTACATGAAAACTCCCCATTTGAGGAACTTCTTCACATGAAATGA

mRNA sequence

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CCCAAGTAGGTAGCAGGCGCGAAAGCTAAAAGCACTACAAATTTCTCCGTTCCAACAAATCACTCTTCCTCTTCATTTCAGCCGCTCCATGGCAATTGCTGAAGA
AGCTCTCTGAAACTCAGAGGCGCGAGAGAAGAAGAGAGAATCACACAAACATTTTATTCTTTCCTCGTTAGGTTTCTGCTCCCAAGCTCTCACTTGAACTTCTCG
CATGGCTTCCTCCACTTCAGTCGATTCGTCTCTTTGGTGGGATCCTTTCCATCCGTTTCTTACCGAGCTCGAAAATGTTTCCCTCTCATCTACAGAACTTCCTCC
TACGCTGATGAAAAAGATGGATGACAACCATGCTTGGTTCGTGGGTACAGTTTCACTCTTTAAGAAACCGAATGAGAAATCAAGGGTGGCTTTAGATTCTCAGGA
AGTTAAAATTGGAGCTCACACGCTATCTATACAACCTGAGCTTAAAGCTAAAGCCCTCAAGTTGAGCTCTTATTTGTGTTTGGATGAGGTCCAATCGTACATTCT
GGCTTCTAGAACCATTGAACATGAGAATGTACATGAAAACTCCCCATTTGAGGAACTTCTTCACATGAAATGA

Protein sequence

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MASSTSVDSSLWWDPFHPFLTELENVSLSSTELPPTLMKKMDDNHAWFVGTVSLFKKPNEKSRVALDSQEVKIGAHTLSIQPELKAKALKLSSYLCLDEVQSYIL
ASRTIEHENVHENSPFEELLHMK

Cmc11g0287981 (gene) of Melon (Charmono) v1.1 genome