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Cmc11g0289611 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc11g0289611
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Descriptiontranscription factor RADIALIS-like
Genome locationCMiso1.1chr11:4206819..4209414
RNA-Seq ExpressionCmc11g0289611
SyntenyCmc11g0289611
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571117.1 Protein RADIALIS-like 2, partial [Cucurbita argyrosperma subsp. sororia]1.2e-3475.44Show/hide
Query:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSSSSSSAPRTSNNA
        MAS+SSS H   SSSWTP QNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVK HFD LVEDVKHIESG VPFP Y+S++S S +S         NA
Subjt:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSSSSSSAPRTSNNA

Query:  NIKDQEQRMRNMKL
        NI DQEQRMRN+KL
Subjt:  NIKDQEQRMRNMKL

XP_004148844.1 transcription factor RADIALIS [Cucumis sativus]1.1e-4084.35Show/hide
Query:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSSSSSSAPRTSNNA
        MASISSS     SSSWTPNQNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSS          T++NA
Subjt:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSSSSSSAPRTSNNA

Query:  NIKDQEQRMRNMKLH
        NIKDQEQRMRNMKLH
Subjt:  NIKDQEQRMRNMKLH

XP_008460938.1 PREDICTED: protein RADIALIS-like 2 [Cucumis melo]2.8e-4994.78Show/hide
Query:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSSSSSSAPRTSNNA
        MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYT     SSSSSSSAPRTS+NA
Subjt:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSSSSSSAPRTSNNA

Query:  NIKDQEQRMRNMKLH
        NIKDQEQRMRNMKLH
Subjt:  NIKDQEQRMRNMKLH

XP_023513343.1 protein RADIALIS-like 2 [Cucurbita pepo subsp. pepo]1.2e-3474.56Show/hide
Query:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSSSSSSAPRTSNNA
        MAS+SSS H   SSSWTP QNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVK HFD LVEDVKHIESG VPFP Y+S++S+S +S         NA
Subjt:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSSSSSSAPRTSNNA

Query:  NIKDQEQRMRNMKL
        N+ DQEQRMRN+KL
Subjt:  NIKDQEQRMRNMKL

XP_038902123.1 protein RADIALIS-like 2 [Benincasa hispida]8.5e-3879.13Show/hide
Query:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSSSSSSAPRTSNNA
        MASI SSSHD  S SWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKT DEVKRHFD LVEDVKHIESGRVPFP YTS+S+         P TS+N 
Subjt:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSSSSSSAPRTSNNA

Query:  NIKDQEQRMRNMKLH
        N+ DQEQRMRN+KLH
Subjt:  NIKDQEQRMRNMKLH

TrEMBL top hitse value%identityAlignment
A0A0A0LL58 MYB transcription factor MYB1425.2e-4184.35Show/hide
Query:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSSSSSSAPRTSNNA
        MASISSS     SSSWTPNQNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSS          T++NA
Subjt:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSSSSSSAPRTSNNA

Query:  NIKDQEQRMRNMKLH
        NIKDQEQRMRNMKLH
Subjt:  NIKDQEQRMRNMKLH

A0A1S3CDK8 protein RADIALIS-like 21.4e-4994.78Show/hide
Query:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSSSSSSAPRTSNNA
        MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYT     SSSSSSSAPRTS+NA
Subjt:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSSSSSSAPRTSNNA

Query:  NIKDQEQRMRNMKLH
        NIKDQEQRMRNMKLH
Subjt:  NIKDQEQRMRNMKLH

A0A6J1FXX9 protein RADIALIS-like 23.1e-3372.81Show/hide
Query:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSSSSSSAPRTSNNA
        MAS++SS     SSSWTP QNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVK HFD LVEDVKHIESG VPFP Y+S++S+S +S         NA
Subjt:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSSSSSSAPRTSNNA

Query:  NIKDQEQRMRNMKL
        NI DQEQRMR++KL
Subjt:  NIKDQEQRMRNMKL

A0A6J1G543 transcription factor RADIALIS-like2.9e-3177.19Show/hide
Query:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSSSSSSAPRTSNNA
        MASI SSSHD  S+SW+PNQNKAFE ALAVFDKDTPDRWLNVA AV G KT DEVKRHF+ LVEDVKHIESG VPFP YT       SSSSSAPRTS++ 
Subjt:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSSSSSSAPRTSNNA

Query:  NIKDQEQRMRNMKL
        NI  QEQRMRNMKL
Subjt:  NIKDQEQRMRNMKL

A0A6J1JBS7 protein RADIALIS-like 21.1e-3372.81Show/hide
Query:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSSSSSSAPRTSNNA
        MAS+SSS H   SSSWTP +NKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVK HFD LVEDVKHIE G VPFP Y+S++S++ +S         NA
Subjt:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSSSSSSAPRTSNNA

Query:  NIKDQEQRMRNMKL
        NI DQEQRMRN+KL
Subjt:  NIKDQEQRMRNMKL

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 15.8e-2150Show/hide
Query:  SSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSSSSSSAPRTSNNANIKD
        SSS    +S SWT  QNKAFE+ALA +D+DTP+RW NVA  V GGKT +EVKRH++ LV+D+  IE+G VPFP Y +S   +            N  +  
Subjt:  SSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSSSSSSAPRTSNNANIKD

Query:  QEQRMRNMKL
        +E+RMRNM+L
Subjt:  QEQRMRNMKL

Q1A173 Protein RADIALIS-like 62.4e-1957.73Show/hide
Query:  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSSSSSSAPRTSNNANI
        +S+  S+ S WT +QNK FERALAV+DKDTPDRW NVA AV GGKT +EVKRH+D LVED+ +IE+GRVP P Y +  S+S S +    R   N  I
Subjt:  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSSSSSSAPRTSNNANI

Q58FS3 Transcription factor RADIALIS8.9e-2252.53Show/hide
Query:  WTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSSSSSSAPRTSNNANIKDQEQRMRNMKL
        W+  +NKAFERALAV+DKDTPDRW NVA AV  G+TP+EVK+H++ LVED+K+IESG+VPFP Y ++                  N+K  E+R RN+K+
Subjt:  WTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSSSSSSAPRTSNNANIKDQEQRMRNMKL

Q8GW75 Protein RADIALIS-like 54.1e-1962.65Show/hide
Query:  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSS
        +SS  S+SSSWT  QNK FERALAV+DKDTPDRW NVA AV G K+ +EVKRH+D LVED+ +IE   VP PKY +    S S
Subjt:  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSS

Q9SIJ5 Protein RADIALIS-like 22.8e-2355.26Show/hide
Query:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSSSSSSAPRTSNNA
        MAS S SS+   S SWT  QNKAFERALAV+D+DTPDRW NVA AV GGKTP+E KR +D LV D++ IE+G VPFP Y +++ +           SN  
Subjt:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSSSSSSAPRTSNNA

Query:  NIKDQEQRMRNMKL
         ++D+E+RMR+MKL
Subjt:  NIKDQEQRMRNMKL

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 52.9e-2062.65Show/hide
Query:  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSS
        +SS  S+SSSWT  QNK FERALAV+DKDTPDRW NVA AV G K+ +EVKRH+D LVED+ +IE   VP PKY +    S S
Subjt:  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSS

AT1G75250.1 RAD-like 64.5e-2163.86Show/hide
Query:  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSS
        +S+  S+ S WT +QNK FERALAV+DKDTPDRW NVA AV GGKT +EVKRH+D LVED+ +IE+GRVP P Y +  S+S S
Subjt:  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSS

AT1G75250.2 RAD-like 61.7e-2057.73Show/hide
Query:  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSSSSSSAPRTSNNANI
        +S+  S+ S WT +QNK FERALAV+DKDTPDRW NVA AV GGKT +EVKRH+D LVED+ +IE+GRVP P Y +  S+S S +    R   N  I
Subjt:  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSSSSSSAPRTSNNANI

AT2G21650.1 Homeodomain-like superfamily protein2.0e-2455.26Show/hide
Query:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSSSSSSAPRTSNNA
        MAS S SS+   S SWT  QNKAFERALAV+D+DTPDRW NVA AV GGKTP+E KR +D LV D++ IE+G VPFP Y +++ +           SN  
Subjt:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSSSSSSAPRTSNNA

Query:  NIKDQEQRMRNMKL
         ++D+E+RMR+MKL
Subjt:  NIKDQEQRMRNMKL

AT4G39250.1 RAD-like 14.1e-2250Show/hide
Query:  SSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSSSSSSAPRTSNNANIKD
        SSS    +S SWT  QNKAFE+ALA +D+DTP+RW NVA  V GGKT +EVKRH++ LV+D+  IE+G VPFP Y +S   +            N  +  
Subjt:  SSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSSSSSSAPRTSNNANIKD

Query:  QEQRMRNMKL
        +E+RMRNM+L
Subjt:  QEQRMRNMKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCATTTCCTCTTCCTCTCACGACTCTGCCTCCTCTTCTTGGACTCCTAACCAAAACAAAGCCTTCGAAAGGGCTTTGGCTGTCTTTGACAAAGACACCCCTGA
TCGCTGGCTCAATGTCGCCAACGCCGTCGGCGGTGGCAAGACCCCTGACGAAGTCAAGCGGCATTTCGACCGTCTCGTCGAAGATGTCAAACACATTGAATCTGGCCGCG
TTCCTTTCCCTAAATACACCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCCCTAGAACCTCCAATAATGCTAACATCAAAGACCAAGAACAAAGGATGAGA
AACATGAAACTCCATTAA
mRNA sequenceShow/hide mRNA sequence
TTTGCTGGCTGTGCATCTTTTTGTCTTCTCTCCCACTTCCATCCTGTGGTTCTTAAGTAAACAAATCATTCAAAATAATTTCTCACTCTCCCTTTTTCCGAAGATTTTCC
CTCTCTCTGCCCCCACTTATAAAATCCCTTCCCCTTCTCCATACTCTTTCTTCTTCACCCCTTTAAATTAATTTTAATTACCAGTTTTTGCCCCTCAACAATGGCTTCCA
TTTCCTCTTCCTCTCACGACTCTGCCTCCTCTTCTTGGACTCCTAACCAAAACAAAGCCTTCGAAAGGGCTTTGGCTGTCTTTGACAAAGACACCCCTGATCGCTGGCTC
AATGTCGCCAACGCCGTCGGCGGTGGCAAGACCCCTGACGAAGTCAAGCGGCATTTCGACCGTCTCGTCGAAGATGTCAAACACATTGAATCTGGCCGCGTTCCTTTCCC
TAAATACACCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCCCTAGAACCTCCAATAATGCTAACATCAAAGACCAAGAACAAAGGATGAGAAACATGAAAC
TCCATTAAATTGGTTAAAATTGAAGGCAAATGGATGGGATTAAGAAGAATGAAAAAGTGGATAGGTGGTTGCTGTTTTTGCCCCTAAGATAACAAAAAAGGAATTGATGT
AGCCAAATTTGCAATTTATGTGTTTTTTTTTTCTTCCTCTTGAAAGTGTATTTGCCCAACTAAAAAGCTAATCAATGTAGAAGAATCAATTTGATTTATGTTTCTTCCAT
CCACTAATTTCCCCCTATATATGAAAGTTTAATCCTTTTCATAATTTGTGAACTTATGGTAAATCATTATCCCCTT
Protein sequenceShow/hide protein sequence
MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSSSSSSAPRTSNNANIKDQEQRMR
NMKLH