CuGenDBv2

Gene ID	Cmc11g0289801
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	mediator of RNA polymerase II transcription subunit 32
Genome location	CMiso1.1chr11:4423783..4427205
RNA-Seq Expression	Cmc11g0289801
Synteny	Cmc11g0289801
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0009631 - cold acclimation (biological process) GO:0010150 - leaf senescence (biological process) GO:0048364 - root development (biological process) GO:0016592 - mediator complex (cellular component)
InterPro domains	IPR033244 - Mediator of RNA polymerase II transcription subunit 32

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0045925.1 mediator of RNA polymerase II transcription subunit 32 [Cucumis melo var. makuwa]

2.2e-70

99.32

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Query:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAV
        MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAV
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFTEDTTQ
        RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFTED TQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFTEDTTQ

TYK13665.1 mediator of RNA polymerase II transcription subunit 32 [Cucumis melo var. makuwa]

5.7e-71

100

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Query:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAV
        MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAV
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFTEDTTQ
        RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFTEDTTQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFTEDTTQ

XP_004148855.1 mediator of RNA polymerase II transcription subunit 32 [Cucumis sativus]

5.3e-69

97.95

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Query:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAV
        MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQS TT LPPISAV
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFTEDTTQ
        RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFTED TQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFTEDTTQ

XP_008457936.1 PREDICTED: mediator of RNA polymerase II transcription subunit 32 [Cucumis melo]

5.7e-71

100

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Query:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAV
        MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAV
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFTEDTTQ
        RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFTEDTTQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFTEDTTQ

XP_038902813.1 mediator of RNA polymerase II transcription subunit 32 [Benincasa hispida]

4.1e-69

97.26

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Query:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAV
        MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ TTG+PPISAV
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFTEDTTQ
        RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFTED TQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFTEDTTQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LIN7 Uncharacterized protein

2.6e-69

97.95

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Query:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAV
        MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQS TT LPPISAV
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFTEDTTQ
        RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFTED TQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFTEDTTQ

A0A1S3C6T6 mediator of RNA polymerase II transcription subunit 32

2.8e-71

100

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Query:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAV
        MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAV
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFTEDTTQ
        RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFTEDTTQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFTEDTTQ

A0A5A7TWZ7 Mediator of RNA polymerase II transcription subunit 32

1.0e-70

99.32

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Query:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAV
        MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAV
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFTEDTTQ
        RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFTED TQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFTEDTTQ

A0A5D3CQ46 Mediator of RNA polymerase II transcription subunit 32

2.8e-71

100

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Query:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAV
        MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAV
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFTEDTTQ
        RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFTEDTTQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFTEDTTQ

A0A6J1JH28 mediator of RNA polymerase II transcription subunit 32-like isoform X2

1.3e-65

93.96

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Query:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQSG--TTGLPPIS
        MDSLVDSLNNAYQEFV+GAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQ+   TTGLPPIS
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQSG--TTGLPPIS

Query:  AVRLEQMSKAVRWLVIELQHGSG-AAASASAHSHQSAPFDARFTEDTTQ
        A+RLEQMSKAVRWLVIELQHGSG AAASASAHSH SAPFDARFTED TQ
Subjt:  AVRLEQMSKAVRWLVIELQHGSG-AAASASAHSHQSAPFDARFTEDTTQ

SwissProt top hits

e value

%identity

Alignment

Q84VW5 Mediator of RNA polymerase II transcription subunit 32

4.3e-45

67.32

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Query:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATG---SLAGKSGQSGTTG----
        MD++VDSLN AY++FV  +A VLE+ E++G QK   TD ALENFK+KWELFRVACDQAEEFVESVKQRIGSECLVDEATG   + AG    +  TG    
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATG---SLAGKSGQSGTTG----

Query:  LPPISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFTEDTTQ
        LPPISAVRLEQMS+AVRWLV+ELQ GSG  A  S HS  S  FD+RF+ED+TQ
Subjt:  LPPISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFTEDTTQ

Arabidopsis top hits

e value

%identity

Alignment

AT1G11760.1 MED32; Has 41 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

3.0e-46

67.32

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Query:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATG---SLAGKSGQSGTTG----
        MD++VDSLN AY++FV  +A VLE+ E++G QK   TD ALENFK+KWELFRVACDQAEEFVESVKQRIGSECLVDEATG   + AG    +  TG    
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATG---SLAGKSGQSGTTG----

Query:  LPPISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFTEDTTQ
        LPPISAVRLEQMS+AVRWLV+ELQ GSG  A  S HS  S  FD+RF+ED+TQ
Subjt:  LPPISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFTEDTTQ

Sequences

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CDS sequence

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ATGGACAGCCTAGTGGACTCTTTAAATAACGCATATCAGGAGTTTGTTGCTGGAGCAGCTAATGTTCTTGAAGCAAATGAAGCCTCTGGGGCTCAGAAGACGGCA
GCAACAGATGCCGCTCTTGAGAATTTTAAACAAAAATGGGAGCTGTTCAGGGTTGCTTGTGATCAAGCAGAGGAGTTTGTAGAGTCTGTGAAGCAAAGGATAGGA
TCAGAGTGCCTTGTTGATGAGGCCACTGGTTCACTGGCTGGCAAGTCTGGGCAGTCTGGTACCACTGGCCTTCCTCCGATCAGTGCTGTTCGATTGGAACAGATG
AGCAAAGCTGTAAGATGGCTCGTGATTGAGTTGCAGCACGGCTCAGGAGCTGCTGCTTCTGCTTCAGCACACTCTCATCAGTCTGCTCCTTTTGATGCTAGATTT
ACTGAGGATACAACCCAATAG

mRNA sequence

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CTTGGCAAAATAAAAATAAAACTCTAATTGAAGGGAGATAAATAAATAAAAAACACAATTAGGTTAAATTATAAAAAATGGTTGTGAAGTTTGAAAGATTTTTAC
ACAAACTATATAACTTTATGGACATTTTTTATAATTCAACATTCAAACGACTAAAATATTTAATTAATTTGAAGCAATTAGGAAACTAGATTTCCTCCCTTCTTC
GCCATATTCCGATCTCAGCTGTCTCTCTCGACATCTCTCACCGTCTCGGCTCGCTCAGCCACAGTGCCGCCCACGCGCGTCGCCGTCGCTTCGCTGCTGCACCTC
CGTCCAACGTTCATCCAGACGCCGCAGTCTCGTGCCGGTATCTGATATGGACAGCCTAGTGGACTCTTTAAATAACGCATATCAGGAGTTTGTTGCTGGAGCAGC
TAATGTTCTTGAAGCAAATGAAGCCTCTGGGGCTCAGAAGACGGCAGCAACAGATGCCGCTCTTGAGAATTTTAAACAAAAATGGGAGCTGTTCAGGGTTGCTTG
TGATCAAGCAGAGGAGTTTGTAGAGTCTGTGAAGCAAAGGATAGGATCAGAGTGCCTTGTTGATGAGGCCACTGGTTCACTGGCTGGCAAGTCTGGGCAGTCTGG
TACCACTGGCCTTCCTCCGATCAGTGCTGTTCGATTGGAACAGATGAGCAAAGCTGTAAGATGGCTCGTGATTGAGTTGCAGCACGGCTCAGGAGCTGCTGCTTC
TGCTTCAGCACACTCTCATCAGTCTGCTCCTTTTGATGCTAGATTTACTGAGGATACAACCCAATAGGTACCGATCTTTCGAGGTTACATAATGAGTTCTTGTTT
TTGTGTTTTGGATGAAATGGCTTTCTTGGGTGGCGGTGGGGTGTTAACTGTGTAAGATAATCAGCTTGAGCTTTGACTGAACATGAAAAAGCTGATCCATTTGTT
CTGTATCTATCGTTAACTAAATATAGTTTCATGTTCTTTGTACTTGTTTGTTTTTCTTGGAGGTTTGGTGGGGAGAAACTGTCTCTGGTATATATACTTAATGTG
GGGATTCAAAACACTAAGGGTATGTTTGGGGTGGGGTTTTAGGAGGAAAAGGATTAGGAAATTGGGCCAAACCGTGTTTGGCCCAAGGATTATGATAA

Protein sequence

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MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAVRLEQM
SKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFTEDTTQ

Cmc11g0289801 (gene) of Melon (Charmono) v1.1 genome