; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc11g0295131 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc11g0295131
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr11:12309011..12309532
RNA-Seq ExpressionCmc11g0295131
SyntenyCmc11g0295131
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR032567 - LDOC1-related
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033652.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.8e-8592.49Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVVFVKKKDGTLRLCIDYRQLNKVTIRNKYHLPCIDDLFDQLRGAALFSKIDLRSEYHQVKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVSPWGAPV+FVKKKDGTLRLCIDYRQLNKVTIRNKY LP IDDLFDQLRGAALFSKIDLRS YHQ+KVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVVFVKKKDGTLRLCIDYRQLNKVTIRNKYHLPCIDDLFDQLRGAALFSKIDLRSEYHQVKVRESDIAK

Query:  TAFRMRYGHYEFRVMPFGLMNASAAFMDIMNRIFHQYLDQFVIVFIDDILVYSIDRESHEEHLRIVLQTLRDK
        T F+ RYGHYEFRVMPFGL NA A FMD+MNRIFHQYLDQFVIVFIDDILVYS+DRESHEEHLRIVLQTLRDK
Subjt:  TAFRMRYGHYEFRVMPFGLMNASAAFMDIMNRIFHQYLDQFVIVFIDDILVYSIDRESHEEHLRIVLQTLRDK

KAA0035455.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.8e-8592.49Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVVFVKKKDGTLRLCIDYRQLNKVTIRNKYHLPCIDDLFDQLRGAALFSKIDLRSEYHQVKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVSPWGAPV+FVKKKDGTLRLCIDYRQLNKVTIRNKY LP IDDLFDQLRGAALFSKIDLRS YHQ+KVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVVFVKKKDGTLRLCIDYRQLNKVTIRNKYHLPCIDDLFDQLRGAALFSKIDLRSEYHQVKVRESDIAK

Query:  TAFRMRYGHYEFRVMPFGLMNASAAFMDIMNRIFHQYLDQFVIVFIDDILVYSIDRESHEEHLRIVLQTLRDK
        TAFR RYGHYEFRVMPFGL NA A FMD+MNRIFH+YLDQFVIVFIDDILVYS+DRESHEEHLRIVLQTLR+K
Subjt:  TAFRMRYGHYEFRVMPFGLMNASAAFMDIMNRIFHQYLDQFVIVFIDDILVYSIDRESHEEHLRIVLQTLRDK

KAA0053247.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.4e-8998.82Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVVFVKKKDGTLRLCIDYRQLNKVTIRNKYHLPCIDDLFDQLRGAALFSKIDLRSEYHQVKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVVFVKKKDGTLRLCIDYRQLNKVTIRNKYHLPCIDDLFDQLRGAALFSKIDLRSEYHQVKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVVFVKKKDGTLRLCIDYRQLNKVTIRNKYHLPCIDDLFDQLRGAALFSKIDLRSEYHQVKVRESDIAK

Query:  TAFRMRYGHYEFRVMPFGLMNASAAFMDIMNRIFHQYLDQFVIVFIDDILVYSIDRESHEEHLRIVLQTL
        TAFRMRYGHYEFRVM FGLMNA AAFMDIMNRIFHQYLDQFVIVFIDDILVYSIDRESHEEHLRIVLQTL
Subjt:  TAFRMRYGHYEFRVMPFGLMNASAAFMDIMNRIFHQYLDQFVIVFIDDILVYSIDRESHEEHLRIVLQTL

TYK09834.1 Retrotransposon protein [Cucumis melo var. makuwa]2.3e-8793.64Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVVFVKKKDGTLRLCIDYRQLNKVTIRNKYHLPCIDDLFDQLRGAALFSKIDLRSEYHQVKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVSPWGAP+VFVKKKDGTLRLCIDYRQLNKV IRNKYHLPCIDDLFDQLRGAALFSKID RS+YHQ+KVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVVFVKKKDGTLRLCIDYRQLNKVTIRNKYHLPCIDDLFDQLRGAALFSKIDLRSEYHQVKVRESDIAK

Query:  TAFRMRYGHYEFRVMPFGLMNASAAFMDIMNRIFHQYLDQFVIVFIDDILVYSIDRESHEEHLRIVLQTLRDK
        TAFR+RY HYEFRVMPFGL NA AAFMDIMNRIFHQYLDQF+IVFIDDILVYSIDRESHEEHLRI+LQTLRDK
Subjt:  TAFRMRYGHYEFRVMPFGLMNASAAFMDIMNRIFHQYLDQFVIVFIDDILVYSIDRESHEEHLRIVLQTLRDK

TYK27290.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.8e-8592.49Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVVFVKKKDGTLRLCIDYRQLNKVTIRNKYHLPCIDDLFDQLRGAALFSKIDLRSEYHQVKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVSPWGAPV+FVKKKDGTLRLCIDYRQLNKVTIRNKY LP IDDLFDQLRGAALFSKIDLRS YHQ+KVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVVFVKKKDGTLRLCIDYRQLNKVTIRNKYHLPCIDDLFDQLRGAALFSKIDLRSEYHQVKVRESDIAK

Query:  TAFRMRYGHYEFRVMPFGLMNASAAFMDIMNRIFHQYLDQFVIVFIDDILVYSIDRESHEEHLRIVLQTLRDK
        TAFR RYGHYEFRVMPFGL NA A FMD+MNRIFH+YLDQFVIVFIDDILVYS+DRESHEEHLRIVLQTLR+K
Subjt:  TAFRMRYGHYEFRVMPFGLMNASAAFMDIMNRIFHQYLDQFVIVFIDDILVYSIDRESHEEHLRIVLQTLRDK

TrEMBL top hitse value%identityAlignment
A0A5A7U2V7 Reverse transcriptase2.3e-8592.49Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVVFVKKKDGTLRLCIDYRQLNKVTIRNKYHLPCIDDLFDQLRGAALFSKIDLRSEYHQVKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVSPWGAPV+FVKKKDGTLRLCIDYRQLNKVTIRNKY LP IDDLFDQLRGAALFSKIDLRS YHQ+KVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVVFVKKKDGTLRLCIDYRQLNKVTIRNKYHLPCIDDLFDQLRGAALFSKIDLRSEYHQVKVRESDIAK

Query:  TAFRMRYGHYEFRVMPFGLMNASAAFMDIMNRIFHQYLDQFVIVFIDDILVYSIDRESHEEHLRIVLQTLRDK
        TAFR RYGHYEFRVMPFGL NA A FMD+MNRIFH+YLDQFVIVFIDDILVYS+DRESHEEHLRIVLQTLR+K
Subjt:  TAFRMRYGHYEFRVMPFGLMNASAAFMDIMNRIFHQYLDQFVIVFIDDILVYSIDRESHEEHLRIVLQTLRDK

A0A5A7UFH6 DNA/RNA polymerases superfamily protein7.0e-9098.82Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVVFVKKKDGTLRLCIDYRQLNKVTIRNKYHLPCIDDLFDQLRGAALFSKIDLRSEYHQVKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVVFVKKKDGTLRLCIDYRQLNKVTIRNKYHLPCIDDLFDQLRGAALFSKIDLRSEYHQVKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVVFVKKKDGTLRLCIDYRQLNKVTIRNKYHLPCIDDLFDQLRGAALFSKIDLRSEYHQVKVRESDIAK

Query:  TAFRMRYGHYEFRVMPFGLMNASAAFMDIMNRIFHQYLDQFVIVFIDDILVYSIDRESHEEHLRIVLQTL
        TAFRMRYGHYEFRVM FGLMNA AAFMDIMNRIFHQYLDQFVIVFIDDILVYSIDRESHEEHLRIVLQTL
Subjt:  TAFRMRYGHYEFRVMPFGLMNASAAFMDIMNRIFHQYLDQFVIVFIDDILVYSIDRESHEEHLRIVLQTL

A0A5D3BHI1 Reverse transcriptase2.3e-8592.49Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVVFVKKKDGTLRLCIDYRQLNKVTIRNKYHLPCIDDLFDQLRGAALFSKIDLRSEYHQVKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVSPWGAPV+FVKKKDGTLRLCIDYRQLNKVTIRNKY LP IDDLFDQLRGAALFSKIDLRS YHQ+KVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVVFVKKKDGTLRLCIDYRQLNKVTIRNKYHLPCIDDLFDQLRGAALFSKIDLRSEYHQVKVRESDIAK

Query:  TAFRMRYGHYEFRVMPFGLMNASAAFMDIMNRIFHQYLDQFVIVFIDDILVYSIDRESHEEHLRIVLQTLRDK
        TAFR RYGHYEFRVMPFGL NA A FMD+MNRIFH+YLDQFVIVFIDDILVYS+DRESHEEHLRIVLQTLR+K
Subjt:  TAFRMRYGHYEFRVMPFGLMNASAAFMDIMNRIFHQYLDQFVIVFIDDILVYSIDRESHEEHLRIVLQTLRDK

A0A5D3BS67 Reverse transcriptase2.3e-8592.49Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVVFVKKKDGTLRLCIDYRQLNKVTIRNKYHLPCIDDLFDQLRGAALFSKIDLRSEYHQVKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVSPWGAPV+FVKKKDGTLRLCIDYRQLNKVTIRNKY LP IDDLFDQLRGAALFSKIDLRS YHQ+KVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVVFVKKKDGTLRLCIDYRQLNKVTIRNKYHLPCIDDLFDQLRGAALFSKIDLRSEYHQVKVRESDIAK

Query:  TAFRMRYGHYEFRVMPFGLMNASAAFMDIMNRIFHQYLDQFVIVFIDDILVYSIDRESHEEHLRIVLQTLRDK
        TAFR RYGHYEFRVMPFGL NA A FMD+MNRIFH+YLDQFVIVFIDDILVYS+DRESHEEHLRIVLQTLR+K
Subjt:  TAFRMRYGHYEFRVMPFGLMNASAAFMDIMNRIFHQYLDQFVIVFIDDILVYSIDRESHEEHLRIVLQTLRDK

A0A5D3CF61 Retrotransposon protein1.1e-8793.64Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVVFVKKKDGTLRLCIDYRQLNKVTIRNKYHLPCIDDLFDQLRGAALFSKIDLRSEYHQVKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVSPWGAP+VFVKKKDGTLRLCIDYRQLNKV IRNKYHLPCIDDLFDQLRGAALFSKID RS+YHQ+KVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVVFVKKKDGTLRLCIDYRQLNKVTIRNKYHLPCIDDLFDQLRGAALFSKIDLRSEYHQVKVRESDIAK

Query:  TAFRMRYGHYEFRVMPFGLMNASAAFMDIMNRIFHQYLDQFVIVFIDDILVYSIDRESHEEHLRIVLQTLRDK
        TAFR+RY HYEFRVMPFGL NA AAFMDIMNRIFHQYLDQF+IVFIDDILVYSIDRESHEEHLRI+LQTLRDK
Subjt:  TAFRMRYGHYEFRVMPFGLMNASAAFMDIMNRIFHQYLDQFVIVFIDDILVYSIDRESHEEHLRIVLQTLRDK

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein1.6e-3037.21Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVVFVKKKDGTLRLCIDYRQLNKVTIRNKYHLPCIDDLFDQLRGAALFSKIDLRSEYHQVKVRESDIAK
        + P +++ +  ++ + +  G IR S +    PV+FV KK+GTLR+ +DY+ LNK    N Y LP I+ L  +++G+ +F+K+DL+S YH ++VR+ D  K
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVVFVKKKDGTLRLCIDYRQLNKVTIRNKYHLPCIDDLFDQLRGAALFSKIDLRSEYHQVKVRESDIAK

Query:  TAFRMRYGHYEFRVMPFGLMNASAAFMDIMNRIFHQYLDQFVIVFIDDILVYSIDRESHEEHLRIVLQTLRD
         AFR   G +E+ VMP+G+  A A F   +N I  +  +  V+ ++DDIL++S     H +H++ VLQ L++
Subjt:  TAFRMRYGHYEFRVMPFGLMNASAAFMDIMNRIFHQYLDQFVIVFIDDILVYSIDRESHEEHLRIVLQTLRD

P0CT41 Transposon Tf2-12 polyprotein1.6e-3037.21Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVVFVKKKDGTLRLCIDYRQLNKVTIRNKYHLPCIDDLFDQLRGAALFSKIDLRSEYHQVKVRESDIAK
        + P +++ +  ++ + +  G IR S +    PV+FV KK+GTLR+ +DY+ LNK    N Y LP I+ L  +++G+ +F+K+DL+S YH ++VR+ D  K
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVVFVKKKDGTLRLCIDYRQLNKVTIRNKYHLPCIDDLFDQLRGAALFSKIDLRSEYHQVKVRESDIAK

Query:  TAFRMRYGHYEFRVMPFGLMNASAAFMDIMNRIFHQYLDQFVIVFIDDILVYSIDRESHEEHLRIVLQTLRD
         AFR   G +E+ VMP+G+  A A F   +N I  +  +  V+ ++DDIL++S     H +H++ VLQ L++
Subjt:  TAFRMRYGHYEFRVMPFGLMNASAAFMDIMNRIFHQYLDQFVIVFIDDILVYSIDRESHEEHLRIVLQTLRD

P31843 RNA-directed DNA polymerase homolog1.4e-3453.44Show/hide
Query:  TLRLCIDYRQLNKVTIRNKYHLPCIDDLFDQLRGAALFSKIDLRSEYHQVKVRESDIAKTAFRMRYGHYEFRVMPFGLMNASAAFMDIMNRIFHQYLDQF
        +LR+CIDYR L KVTI+NKY +P +DDLFD+L  A  F+K+DLRS Y QV++ + D  KT    RYG +EFRVMPFGL NA A F ++MN + ++YLD F
Subjt:  TLRLCIDYRQLNKVTIRNKYHLPCIDDLFDQLRGAALFSKIDLRSEYHQVKVRESDIAKTAFRMRYGHYEFRVMPFGLMNASAAFMDIMNRIFHQYLDQF

Query:  VIVFIDDILVYSIDRES---HEEHLRIVLQT
        V+V++DD++VY+I   S   H +HLR+V ++
Subjt:  VIVFIDDILVYSIDRES---HEEHLRIVLQT

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein1.8e-3445.51Show/hide
Query:  KELKMQLQELVDKGYIRPSVSPWGAPVVFVKKKDGTLRLCIDYRQLNKVTIRNKYHLPCIDDLFDQLRGAALFSKIDLRSEYHQVKVRESDIAKTAFRMR
        +E+   +Q+L+D  +I PS SP  +PVV V KKDGT RLC+DYR LNK TI + + LP ID+L  ++  A +F+ +DL S YHQ+ +   D  KTAF   
Subjt:  KELKMQLQELVDKGYIRPSVSPWGAPVVFVKKKDGTLRLCIDYRQLNKVTIRNKYHLPCIDDLFDQLRGAALFSKIDLRSEYHQVKVRESDIAKTAFRMR

Query:  YGHYEFRVMPFGLMNASAAFMDIMNRIFHQYLDQFVIVFIDDILVYSIDRESHEEHLRIVLQTLRDK
         G YE+ VMPFGL+NA + F   M   F     +FV V++DDIL++S   E H +HL  VL+ L+++
Subjt:  YGHYEFRVMPFGLMNASAAFMDIMNRIFHQYLDQFVIVFIDDILVYSIDRESHEEHLRIVLQTLRDK

Q99315 Transposon Ty3-G Gag-Pol polyprotein1.8e-3445.51Show/hide
Query:  KELKMQLQELVDKGYIRPSVSPWGAPVVFVKKKDGTLRLCIDYRQLNKVTIRNKYHLPCIDDLFDQLRGAALFSKIDLRSEYHQVKVRESDIAKTAFRMR
        +E+   +Q+L+D  +I PS SP  +PVV V KKDGT RLC+DYR LNK TI + + LP ID+L  ++  A +F+ +DL S YHQ+ +   D  KTAF   
Subjt:  KELKMQLQELVDKGYIRPSVSPWGAPVVFVKKKDGTLRLCIDYRQLNKVTIRNKYHLPCIDDLFDQLRGAALFSKIDLRSEYHQVKVRESDIAKTAFRMR

Query:  YGHYEFRVMPFGLMNASAAFMDIMNRIFHQYLDQFVIVFIDDILVYSIDRESHEEHLRIVLQTLRDK
         G YE+ VMPFGL+NA + F   M   F     +FV V++DDIL++S   E H +HL  VL+ L+++
Subjt:  YGHYEFRVMPFGLMNASAAFMDIMNRIFHQYLDQFVIVFIDDILVYSIDRESHEEHLRIVLQTLRDK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCCAAGCGAGCTTAAAGAATTGAAGATGCAGTTACAAGAACTAGTTGACAAAGGATACATCAGGCCTAGTGTTTCGCCGTGGGGAGCACCAGTGGTATTTGTGAA
AAAGAAAGATGGTACCCTCAGATTATGTATTGACTATAGACAGTTAAACAAGGTTACAATACGTAACAAGTATCATTTACCATGCATCGATGACTTATTTGATCAACTAA
GGGGAGCAGCATTGTTCTCTAAGATTGACTTAAGGTCAGAATACCACCAGGTGAAGGTTAGAGAATCAGATATTGCTAAGACAGCATTTAGAATGAGGTATGGGCATTAT
GAGTTTCGAGTTATGCCATTCGGTTTAATGAATGCGTCAGCGGCTTTCATGGATATCATGAACAGGATCTTCCATCAGTATTTAGATCAGTTTGTGATTGTGTTCATTGA
TGATATATTAGTTTACTCGATTGACAGAGAATCCCATGAGGAACATCTGAGGATTGTTCTACAAACTCTGCGTGATAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTCCAAGCGAGCTTAAAGAATTGAAGATGCAGTTACAAGAACTAGTTGACAAAGGATACATCAGGCCTAGTGTTTCGCCGTGGGGAGCACCAGTGGTATTTGTGAA
AAAGAAAGATGGTACCCTCAGATTATGTATTGACTATAGACAGTTAAACAAGGTTACAATACGTAACAAGTATCATTTACCATGCATCGATGACTTATTTGATCAACTAA
GGGGAGCAGCATTGTTCTCTAAGATTGACTTAAGGTCAGAATACCACCAGGTGAAGGTTAGAGAATCAGATATTGCTAAGACAGCATTTAGAATGAGGTATGGGCATTAT
GAGTTTCGAGTTATGCCATTCGGTTTAATGAATGCGTCAGCGGCTTTCATGGATATCATGAACAGGATCTTCCATCAGTATTTAGATCAGTTTGTGATTGTGTTCATTGA
TGATATATTAGTTTACTCGATTGACAGAGAATCCCATGAGGAACATCTGAGGATTGTTCTACAAACTCTGCGTGATAAATAG
Protein sequenceShow/hide protein sequence
MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVVFVKKKDGTLRLCIDYRQLNKVTIRNKYHLPCIDDLFDQLRGAALFSKIDLRSEYHQVKVRESDIAKTAFRMRYGHY
EFRVMPFGLMNASAAFMDIMNRIFHQYLDQFVIVFIDDILVYSIDRESHEEHLRIVLQTLRDK