CuGenDBv2

Gene ID	Cmc11g0295471
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr11:12935751..12936110
RNA-Seq Expression	Cmc11g0295471
Synteny	Cmc11g0295471
Gene Ontology terms	NA
InterPro domains	IPR000477 - Reverse transcriptase domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0035574.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

2.2e-52

89.92

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Query:  MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANKLHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNW
        MSFGLTNAP VFMDLMNRVFREFLDTFVIVFIDDILIYSK EAKH+EHL M+L+TLR NKL+ KFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT+W
Subjt:  MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANKLHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNW

Query:  PRPSTVSEVRSFLGLASYY
         RPSTVSEVRSFLGLA YY
Subjt:  PRPSTVSEVRSFLGLASYY

KAA0039055.1 reverse transcriptase [Cucumis melo var. makuwa]

8.8e-54

90.76

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Query:  MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANKLHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNW
        MSFGLTNAP VFMDLMNRVFREFLDTFVIVFIDDILIYSK+EA+H+EHL MVL+TLR NKL+ KFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT+W
Subjt:  MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANKLHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNW

Query:  PRPSTVSEVRSFLGLASYY
        PRPST+SEVRSFLGLASYY
Subjt:  PRPSTVSEVRSFLGLASYY

KAA0051425.1 pol protein [Cucumis melo var. makuwa]

1.3e-52

89.08

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Query:  MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANKLHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNW
        MSFGLTNAPTVFMDLMNRVFREFLDTF+IVFIDDILIYSK EA+H+EHL MVL+TLR NKL+ KFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT+W
Subjt:  MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANKLHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNW

Query:  PRPSTVSEVRSFLGLASYY
        PRPST+S+VRSFLGLA YY
Subjt:  PRPSTVSEVRSFLGLASYY

KAA0059783.1 pol protein [Cucumis melo var. makuwa]

3.3e-53

90.76

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Query:  MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANKLHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNW
        MSFGLTNAP VFMDLMN+VFREFLDTFVIVFIDDILIYSKIEA+H+EHL MVL+TLR NKL+ KFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT+W
Subjt:  MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANKLHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNW

Query:  PRPSTVSEVRSFLGLASYY
        PRPSTVSEVRSFLGLA YY
Subjt:  PRPSTVSEVRSFLGLASYY

TYK29834.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.7e-52

89.08

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Query:  MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANKLHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNW
        MSFGLTNAP VFMDLMNRVFREFLDTFVIVF DDILIYSKIEA+H++HL MVL+TLRANKL+ KFSKCEFWLKQ+SFLGHVVSKAGVSVDPAKIEAVT+W
Subjt:  MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANKLHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNW

Query:  PRPSTVSEVRSFLGLASYY
        PRPSTVSEVRSFLGL  YY
Subjt:  PRPSTVSEVRSFLGLASYY

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TCC7 Reverse transcriptase

4.3e-54

90.76

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Query:  MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANKLHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNW
        MSFGLTNAP VFMDLMNRVFREFLDTFVIVFIDDILIYSK+EA+H+EHL MVL+TLR NKL+ KFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT+W
Subjt:  MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANKLHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNW

Query:  PRPSTVSEVRSFLGLASYY
        PRPST+SEVRSFLGLASYY
Subjt:  PRPSTVSEVRSFLGLASYY

A0A5A7UCP3 Pol protein

6.1e-53

89.08

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Query:  MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANKLHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNW
        MSFGLTNAPTVFMDLMNRVFREFLDTF+IVFIDDILIYSK EA+H+EHL MVL+TLR NKL+ KFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT+W
Subjt:  MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANKLHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNW

Query:  PRPSTVSEVRSFLGLASYY
        PRPST+S+VRSFLGLA YY
Subjt:  PRPSTVSEVRSFLGLASYY

A0A5A7UV33 Pol protein

1.6e-53

90.76

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Query:  MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANKLHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNW
        MSFGLTNAP VFMDLMN+VFREFLDTFVIVFIDDILIYSKIEA+H+EHL MVL+TLR NKL+ KFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT+W
Subjt:  MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANKLHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNW

Query:  PRPSTVSEVRSFLGLASYY
        PRPSTVSEVRSFLGLA YY
Subjt:  PRPSTVSEVRSFLGLASYY

A0A5D3E1T8 Ty3-gypsy retrotransposon protein

8.0e-53

89.08

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Query:  MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANKLHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNW
        MSFGLTNAP VFMDLMNRVFREFLDTFVIVF DDILIYSKIEA+H++HL MVL+TLRANKL+ KFSKCEFWLKQ+SFLGHVVSKAGVSVDPAKIEAVT+W
Subjt:  MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANKLHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNW

Query:  PRPSTVSEVRSFLGLASYY
        PRPSTVSEVRSFLGL  YY
Subjt:  PRPSTVSEVRSFLGLASYY

A0A5D3E4V0 Reverse transcriptase

1.0e-52

89.92

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Query:  MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANKLHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNW
        MSFGLTNAP VFMDLMNRVFREFLDTFVIVFIDDILIYSK EAKH+EHL M+L+TLR NKL+ KFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT+W
Subjt:  MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANKLHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNW

Query:  PRPSTVSEVRSFLGLASYY
         RPSTVSEVRSFLGLA YY
Subjt:  PRPSTVSEVRSFLGLASYY

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

2.3e-20

39.5

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Query:  MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANKLHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNW
        M FGL NAP  F   MN + R  L+   +V++DDI+++S    +H + L +V E L    L ++  KCEF  ++ +FLGHV++  G+  +P KIEA+  +
Subjt:  MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANKLHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNW

Query:  PRPSTVSEVRSFLGLASYY
        P P+   E+++FLGL  YY
Subjt:  PRPSTVSEVRSFLGLASYY

P10401 Retrovirus-related Pol polyprotein from transposon gypsy

1.1e-19

40.34

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Query:  MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANKLHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNW
        + FGL NA ++F   ++ V RE +     V++DD++I+S+ E+ H  H+  VL+ L    + V   K  F+ + V +LG +VSK G   DP K++A+  +
Subjt:  MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANKLHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNW

Query:  PRPSTVSEVRSFLGLASYY
        P P  V +VRSFLGLASYY
Subjt:  PRPSTVSEVRSFLGLASYY

P20825 Retrovirus-related Pol polyprotein from transposon 297

3.0e-20

38.66

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Query:  MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANKLHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNW
        M FGL NAP  F   MN + R  L+   +V++DDI+I+S    +H   + +V   L    L ++  KCEF  K+ +FLGH+V+  G+  +P K++A+ ++
Subjt:  MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANKLHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNW

Query:  PRPSTVSEVRSFLGLASYY
        P P+   E+R+FLGL  YY
Subjt:  PRPSTVSEVRSFLGLASYY

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

5.6e-19

37.82

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Query:  MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANKLHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNW
        + FGL NAP +F  +++ + RE +     V+IDDI+++S+    H ++L +VL +L    L V   K  F   QV FLG++V+  G+  DP K+ A++  
Subjt:  MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANKLHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNW

Query:  PRPSTVSEVRSFLGLASYY
        P P++V E++ FLG+ SYY
Subjt:  PRPSTVSEVRSFLGLASYY

Q99315 Transposon Ty3-G Gag-Pol polyprotein

3.4e-16

39.5

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Query:  MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANKLHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNW
        M FGL NAP+ F   M   FR+    FV V++DDILI+S+   +H +HL  VLE L+   L VK  KC+F  ++  FLG+ +    ++    K  A+ ++
Subjt:  MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANKLHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNW

Query:  PRPSTVSEVRSFLGLASYY
        P P TV + + FLG+ +YY
Subjt:  PRPSTVSEVRSFLGLASYY

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

1.6e-13

44.59

Show/hide

Query:  HLCMVLETLRANKLHVKFSKCEFWLKQVSFLG--HVVSKAGVSVDPAKIEAVTNWPRPSTVSEVRSFLGLASYY
        HL MVL+    ++ +    KC F   Q+++LG  H++S  GVS DPAK+EA+  WP P   +E+R FLGL  YY
Subjt:  HLCMVLETLRANKLHVKFSKCEFWLKQVSFLG--HVVSKAGVSVDPAKIEAVTNWPRPSTVSEVRSFLGLASYY

Sequences

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CDS sequence

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ATGTCTTTTGGTTTGACGAATGCTCCGACAGTGTTCATGGATTTGATGAACAGAGTGTTTAGAGAGTTCCTTGACACTTTTGTGATCGTGTTTATTGATGATATT
TTGATATATTCCAAGATAGAGGCCAAGCATGATGAGCATTTATGTATGGTTTTAGAAACCCTTCGAGCTAATAAACTGCATGTAAAGTTCTCAAAATGTGAGTTT
TGGTTGAAGCAGGTATCCTTTCTAGGCCATGTGGTTTCTAAAGCTGGTGTTTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCAATTGGCCCCGACCTTCCACA
GTCAGTGAGGTTCGTAGTTTTCTGGGTTTAGCAAGTTATTACTGA

mRNA sequence

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Protein sequence

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MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKIEAKHDEHLCMVLETLRANKLHVKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTNWPRPST
VSEVRSFLGLASYY

Cmc11g0295471 (gene) of Melon (Charmono) v1.1 genome