CuGenDBv2

Gene ID	Cmc11g0300971
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr11:21198297..21200702
RNA-Seq Expression	Cmc11g0300971
Synteny	Cmc11g0300971
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily IPR041373 - Reverse transcriptase, RNase H-like domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AAO45752.1 pol protein [Cucumis melo subsp. melo]

0.0e+00

84.43

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Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNASAVFMDLMNKVFREFLDTFVIVFIDDILIYSKKEAEHEEHLRMVLETLRDNKLYAKFSNCEFWLKQVSLLGHVVSKAG
        TAFRSRYGHY+FIVMSFGLTNA AVFMDLMN+VFREFLDTFVIVFIDDILIYSK EAEHEEHLRMVL+TLRDNKLYAKFS CEFWLKQVS LGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNASAVFMDLMNKVFREFLDTFVIVFIDDILIYSKKEAEHEEHLRMVLETLRDNKLYAKFSNCEFWLKQVSLLGHVVSKAG

Query:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLT-------------------
        VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQ LKQKLVTAPVLT                   
Subjt:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLT-------------------

Query:  -------GKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA
               GKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA
Subjt:  -------GKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA

Query:  LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDR----
        LSRKVSHSAALITRQAPLHRDLERAEIAV VGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQ  EFSLSSDGGLLFERRLCVPSD     
Subjt:  LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDR----

Query:  ----------------------------------------------------------------------------------LPRTLRGFTVIWVVVDRL
                                                                                          LPRTLRGFTVIWVVVDRL
Subjt:  ----------------------------------------------------------------------------------LPRTLRGFTVIWVVVDRL

Query:  TKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACELEFPSSWDSHL
        TKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRAC LEFP SWDSHL
Subjt:  TKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACELEFPSSWDSHL

Query:  YLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSTQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLR
        +LMEFAYNNSYQATIGMAPFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQS QKSYADVRRKDLEFEVGDKVFLKVAPM+GVLR
Subjt:  YLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSTQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLR

Query:  FERRGKLSPRFVGPFEILERIDPVAYRLALPPSLSTVHDVFHVSMLRK
        FERRGKLSPRFVGPFEILERI PVAYRLALPPSLSTVHDVFHVSMLRK
Subjt:  FERRGKLSPRFVGPFEILERIDPVAYRLALPPSLSTVHDVFHVSMLRK

KAA0040689.1 pol protein [Cucumis melo var. makuwa]

0.0e+00

86.91

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Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        MAPAELKELKVQLQELLDKGFIRPS+SPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNASAVFMDLMNKVFREFLDTFVIVFIDDILIYSKKEAEHEEHLRMVLETLRDNKLYAKFSNCEFWLKQVSLLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNA AVFMDLMN+VFREFLDTFVIVFIDDILIYSK EAEHEEHLRMVL+TLRDNKLYAKFS CEFWLKQVS LGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNASAVFMDLMNKVFREFLDTFVIVFIDDILIYSKKEAEHEEHLRMVLETLRDNKLYAKFSNCEFWLKQVSLLGHVVSKAG

Query:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVL--------------------
        VSVDP KIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVL                    
Subjt:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVL--------------------

Query:  ------TGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA
               GKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA
Subjt:  ------TGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA

Query:  LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDR----
        LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFS+SSDGGLLFERRLCVPSD     
Subjt:  LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDR----

Query:  -----------------------------------------------------------LPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYM
                                                                   LPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYM
Subjt:  -----------------------------------------------------------LPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYM

Query:  SEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACELEFPSSWDSHLYLMEFAYNNSYQATIGMAPFEAL
        SEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQT+GQTERLNQVLEDMLRAC LEFP SWDSHL+LMEFAYNNSYQATIGMAPFEAL
Subjt:  SEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACELEFPSSWDSHLYLMEFAYNNSYQATIGMAPFEAL

Query:  YGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSTQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIDP
        YGKCCRSPVCWGEVGEQRLMGPELV+STNEAIQKIRSRMHTAQS QKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERI P
Subjt:  YGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSTQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIDP

Query:  VAYRLALPPSLSTVHDVFHVSMLRK
        VAYRLALPPSLSTVHDVFHVSMLRK
Subjt:  VAYRLALPPSLSTVHDVFHVSMLRK

KAA0048687.1 pol protein [Cucumis melo var. makuwa]

0.0e+00

84.89

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Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNASAVFMDLMNKVFREFLDTFVIVFIDDILIYSKKEAEHEEHLRMVLETLRDNKLYAKFSNCEFWLKQVSLLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNA AVFMDLMN+VFREFLDTFVIVFIDDILIYSK EAEHEEHLRMVL+TLRDNKLYAKFS CEFWLKQVS LGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNASAVFMDLMNKVFREFLDTFVIVFIDDILIYSKKEAEHEEHLRMVLETLRDNKLYAKFSNCEFWLKQVSLLGHVVSKAG

Query:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLT-------------------
        VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLT                   
Subjt:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLT-------------------

Query:  -------GKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA
               GKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA
Subjt:  -------GKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA

Query:  LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDR----
        LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSD     
Subjt:  LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDR----

Query:  ---------------------------------------------------------------------------------LPRTLRGFTVIWVVVDRLT
                                                                                         LPRTLRGFTVIWVVVDRLT
Subjt:  ---------------------------------------------------------------------------------LPRTLRGFTVIWVVVDRLT

Query:  KSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACELEFPSSWDSHLY
        KSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWK LQTAMGTRLDFSTAFHPQTDGQTERLNQVLE MLRAC LEFP SWDSHL+
Subjt:  KSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACELEFPSSWDSHLY

Query:  LMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSTQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRF
        LMEF YNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQS QKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRF
Subjt:  LMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSTQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRF

Query:  ERRGKLSPRFVGPFEILERIDPVAYRLALPPSLSTVHDVFHVSMLRK
        ERRGKLSPRF+GPFEILERI PVAYRLALPPSLSTVHDVFHVSMLRK
Subjt:  ERRGKLSPRFVGPFEILERIDPVAYRLALPPSLSTVHDVFHVSMLRK

KAA0057672.1 pol protein [Cucumis melo var. makuwa]

0.0e+00

84.53

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Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSG HQLRIKD DVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNASAVFMDLMNKVFREFLDTFVIVFIDDILIYSKKEAEHEEHLRMVLETLRDNKLYAKFSNCEFWLKQVSLLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNA AVFMDLMN+VFREFLDTFVIVFIDDILIYSK EAEHEEHLRMVL+TLRDNKLYAKFS CEFWLKQVS LGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNASAVFMDLMNKVFREFLDTFVIVFIDDILIYSKKEAEHEEHLRMVLETLRDNKLYAKFSNCEFWLKQVSLLGHVVSKAG

Query:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLT-------------------
        VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR ATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLT                   
Subjt:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLT-------------------

Query:  -------GKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA
               GKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA
Subjt:  -------GKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA

Query:  LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDR----
        LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSD     
Subjt:  LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDR----

Query:  ---------------------------------------------------------------------------------LPRTLRGFTVIWVVVDRLT
                                                                                         LPRTLRGFTVIWVVVDRLT
Subjt:  ---------------------------------------------------------------------------------LPRTLRGFTVIWVVVDRLT

Query:  KSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACELEFPSSWDSHLY
        KSAHFVPGKSTYT SKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLN+VLEDMLRAC LEFP SWDSHL+
Subjt:  KSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACELEFPSSWDSHLY

Query:  LMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSTQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRF
        LMEFAYNNSYQATIGMAPFEALY KCCRSP+CWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQS QKSYADVRRKDLEFEVGDKVFLKVAPMRGV+RF
Subjt:  LMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSTQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRF

Query:  ERRGKLSPRFVGPFEILERIDPVAYRLALPPSLSTVHDVFHVSMLRK
        ERRGKLSPRFVGPFEILERI PVAYRLALPPSLSTVHDVFHVSMLRK
Subjt:  ERRGKLSPRFVGPFEILERIDPVAYRLALPPSLSTVHDVFHVSMLRK

KAA0059071.1 pol protein [Cucumis melo var. makuwa]

0.0e+00

86.77

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Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDY ELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNASAVFMDLMNKVFREFLDTFVIVFIDDILIYSKKEAEHEEHLRMVLETLRDNKLYAKFSNCEFWLKQVSLLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNA AVFMDLMN+VFREFLDTFVIVFIDDILIYSK EAEHE+HLRMVL+TLRDNKLYAKFS CEFWLKQVS LGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNASAVFMDLMNKVFREFLDTFVIVFIDDILIYSKKEAEHEEHLRMVLETLRDNKLYAKFSNCEFWLKQVSLLGHVVSKAG

Query:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLT-------------------
        VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDS QNLKQKLVTAPVLT                   
Subjt:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLT-------------------

Query:  -------GKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA
               GKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA
Subjt:  -------GKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA

Query:  LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDR----
        LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVT+QLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSD     
Subjt:  LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDR----

Query:  ----------------------------------------------------------LPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMS
                                                                  LPRTL+GFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMS
Subjt:  ----------------------------------------------------------LPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMS

Query:  EIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACELEFPSSWDSHLYLMEFAYNNSYQATIGMAPFEALY
        EIVRLHGVPVSIVSDRD RFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRAC LEFP SWDSHL+LMEFAYNNSYQATIGMAPFEALY
Subjt:  EIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACELEFPSSWDSHLYLMEFAYNNSYQATIGMAPFEALY

Query:  GKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSTQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIDPV
        GKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQS QKSYADVRRKDLEFEVGDKVFLKVA MRGV+RFERRGKLSPRFVGPFEILERI PV
Subjt:  GKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSTQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIDPV

Query:  AYRLALPPSLSTVHDVFHVSMLRK
        AYRLALPPSLSTVHDVFHVSMLRK
Subjt:  AYRLALPPSLSTVHDVFHVSMLRK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T0M7 Reverse transcriptase

0.0e+00

89.9

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Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKK DGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNASAVFMDLMNKVFREFLDTFVIVFIDDILIYSKKEAEHEEHLRMVLETLRDNKLYAKFSNCEFWLKQVSLLGHVVSKAG
        TAF SRYGHYEFIVMSFGLTNA AVF+DLMN+VFREFLDTFVIVFIDDILIYSK EAEH EHLR+VL+TLRDNKLYAKFS CEFWLKQVS LGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNASAVFMDLMNKVFREFLDTFVIVFIDDILIYSKKEAEHEEHLRMVLETLRDNKLYAKFSNCEFWLKQVSLLGHVVSKAG

Query:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLT-------------------
        VSVDPAKIEAVTGW RPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLT                   
Subjt:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLT-------------------

Query:  -------GKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA
               GKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHK LKYFFTQKELNMRQRRWLELVKDYDCEILYHPGK NVVADA
Subjt:  -------GKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA

Query:  LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDR----
        LSRKVSHSAALITRQAPLH+DLERAEIAVSVGAVT+QLAQLTVQP+LRQRIIDAQSNDPYLVEKRGLAEAGQAVEFS+SSDGGLLFERRL VPSD     
Subjt:  LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDR----

Query:  ----------------LPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAF
                        LPRTLRGFTVIWVVVDRLTKSAHF+PGKSTYTASKWAQLYMSEIVRL GVPVSIVSDRDARFTSKFWKGLQT MGTRLDFSTAF
Subjt:  ----------------LPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAF

Query:  HPQTDGQTERLNQVLEDMLRACELEFPSSWDSHLYLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQ
        HPQTD Q ERLNQVLEDMLRAC LEFP SWDSHL+LMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQ
Subjt:  HPQTDGQTERLNQVLEDMLRACELEFPSSWDSHLYLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQ

Query:  STQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIDPVAYRLALPPSLSTVHDVFHVSMLRK
        S QKSYADVRRKDLEFEVGDKVFL+VAPMRGVLRFERRGKLSP FV PFEILERI PVAYRLALPPSLSTVHDVFHVSMLRK
Subjt:  STQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIDPVAYRLALPPSLSTVHDVFHVSMLRK

A0A5A7U330 Reverse transcriptase

0.0e+00

84.89

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Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNASAVFMDLMNKVFREFLDTFVIVFIDDILIYSKKEAEHEEHLRMVLETLRDNKLYAKFSNCEFWLKQVSLLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNA AVFMDLMN+VFREFLDTFVIVFIDDILIYSK EAEHEEHLRMVL+TLRDNKLYAKFS CEFWLKQVS LGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNASAVFMDLMNKVFREFLDTFVIVFIDDILIYSKKEAEHEEHLRMVLETLRDNKLYAKFSNCEFWLKQVSLLGHVVSKAG

Query:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLT-------------------
        VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLT                   
Subjt:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLT-------------------

Query:  -------GKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA
               GKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA
Subjt:  -------GKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA

Query:  LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDR----
        LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSD     
Subjt:  LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDR----

Query:  ---------------------------------------------------------------------------------LPRTLRGFTVIWVVVDRLT
                                                                                         LPRTLRGFTVIWVVVDRLT
Subjt:  ---------------------------------------------------------------------------------LPRTLRGFTVIWVVVDRLT

Query:  KSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACELEFPSSWDSHLY
        KSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWK LQTAMGTRLDFSTAFHPQTDGQTERLNQVLE MLRAC LEFP SWDSHL+
Subjt:  KSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACELEFPSSWDSHLY

Query:  LMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSTQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRF
        LMEF YNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQS QKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRF
Subjt:  LMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSTQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRF

Query:  ERRGKLSPRFVGPFEILERIDPVAYRLALPPSLSTVHDVFHVSMLRK
        ERRGKLSPRF+GPFEILERI PVAYRLALPPSLSTVHDVFHVSMLRK
Subjt:  ERRGKLSPRFVGPFEILERIDPVAYRLALPPSLSTVHDVFHVSMLRK

A0A5A7UP94 Pol protein

0.0e+00

84.53

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Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSG HQLRIKD DVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNASAVFMDLMNKVFREFLDTFVIVFIDDILIYSKKEAEHEEHLRMVLETLRDNKLYAKFSNCEFWLKQVSLLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNA AVFMDLMN+VFREFLDTFVIVFIDDILIYSK EAEHEEHLRMVL+TLRDNKLYAKFS CEFWLKQVS LGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNASAVFMDLMNKVFREFLDTFVIVFIDDILIYSKKEAEHEEHLRMVLETLRDNKLYAKFSNCEFWLKQVSLLGHVVSKAG

Query:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLT-------------------
        VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR ATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLT                   
Subjt:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLT-------------------

Query:  -------GKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA
               GKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA
Subjt:  -------GKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA

Query:  LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDR----
        LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSD     
Subjt:  LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDR----

Query:  ---------------------------------------------------------------------------------LPRTLRGFTVIWVVVDRLT
                                                                                         LPRTLRGFTVIWVVVDRLT
Subjt:  ---------------------------------------------------------------------------------LPRTLRGFTVIWVVVDRLT

Query:  KSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACELEFPSSWDSHLY
        KSAHFVPGKSTYT SKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLN+VLEDMLRAC LEFP SWDSHL+
Subjt:  KSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACELEFPSSWDSHLY

Query:  LMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSTQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRF
        LMEFAYNNSYQATIGMAPFEALY KCCRSP+CWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQS QKSYADVRRKDLEFEVGDKVFLKVAPMRGV+RF
Subjt:  LMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSTQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRF

Query:  ERRGKLSPRFVGPFEILERIDPVAYRLALPPSLSTVHDVFHVSMLRK
        ERRGKLSPRFVGPFEILERI PVAYRLALPPSLSTVHDVFHVSMLRK
Subjt:  ERRGKLSPRFVGPFEILERIDPVAYRLALPPSLSTVHDVFHVSMLRK

A0A5A7V003 Reverse transcriptase

0.0e+00

86.77

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Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDY ELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNASAVFMDLMNKVFREFLDTFVIVFIDDILIYSKKEAEHEEHLRMVLETLRDNKLYAKFSNCEFWLKQVSLLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNA AVFMDLMN+VFREFLDTFVIVFIDDILIYSK EAEHE+HLRMVL+TLRDNKLYAKFS CEFWLKQVS LGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNASAVFMDLMNKVFREFLDTFVIVFIDDILIYSKKEAEHEEHLRMVLETLRDNKLYAKFSNCEFWLKQVSLLGHVVSKAG

Query:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLT-------------------
        VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDS QNLKQKLVTAPVLT                   
Subjt:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLT-------------------

Query:  -------GKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA
               GKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA
Subjt:  -------GKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA

Query:  LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDR----
        LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVT+QLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSD     
Subjt:  LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDR----

Query:  ----------------------------------------------------------LPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMS
                                                                  LPRTL+GFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMS
Subjt:  ----------------------------------------------------------LPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMS

Query:  EIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACELEFPSSWDSHLYLMEFAYNNSYQATIGMAPFEALY
        EIVRLHGVPVSIVSDRD RFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRAC LEFP SWDSHL+LMEFAYNNSYQATIGMAPFEALY
Subjt:  EIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACELEFPSSWDSHLYLMEFAYNNSYQATIGMAPFEALY

Query:  GKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSTQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIDPV
        GKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQS QKSYADVRRKDLEFEVGDKVFLKVA MRGV+RFERRGKLSPRFVGPFEILERI PV
Subjt:  GKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSTQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIDPV

Query:  AYRLALPPSLSTVHDVFHVSMLRK
        AYRLALPPSLSTVHDVFHVSMLRK
Subjt:  AYRLALPPSLSTVHDVFHVSMLRK

Q84KB0 Pol protein

0.0e+00

84.43

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Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNASAVFMDLMNKVFREFLDTFVIVFIDDILIYSKKEAEHEEHLRMVLETLRDNKLYAKFSNCEFWLKQVSLLGHVVSKAG
        TAFRSRYGHY+FIVMSFGLTNA AVFMDLMN+VFREFLDTFVIVFIDDILIYSK EAEHEEHLRMVL+TLRDNKLYAKFS CEFWLKQVS LGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNASAVFMDLMNKVFREFLDTFVIVFIDDILIYSKKEAEHEEHLRMVLETLRDNKLYAKFSNCEFWLKQVSLLGHVVSKAG

Query:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLT-------------------
        VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQ LKQKLVTAPVLT                   
Subjt:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLT-------------------

Query:  -------GKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA
               GKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA
Subjt:  -------GKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA

Query:  LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDR----
        LSRKVSHSAALITRQAPLHRDLERAEIAV VGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQ  EFSLSSDGGLLFERRLCVPSD     
Subjt:  LSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDR----

Query:  ----------------------------------------------------------------------------------LPRTLRGFTVIWVVVDRL
                                                                                          LPRTLRGFTVIWVVVDRL
Subjt:  ----------------------------------------------------------------------------------LPRTLRGFTVIWVVVDRL

Query:  TKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACELEFPSSWDSHL
        TKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRAC LEFP SWDSHL
Subjt:  TKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACELEFPSSWDSHL

Query:  YLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSTQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLR
        +LMEFAYNNSYQATIGMAPFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQS QKSYADVRRKDLEFEVGDKVFLKVAPM+GVLR
Subjt:  YLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSTQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLR

Query:  FERRGKLSPRFVGPFEILERIDPVAYRLALPPSLSTVHDVFHVSMLRK
        FERRGKLSPRFVGPFEILERI PVAYRLALPPSLSTVHDVFHVSMLRK
Subjt:  FERRGKLSPRFVGPFEILERIDPVAYRLALPPSLSTVHDVFHVSMLRK

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

8.4e-105

29.42

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Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        + P +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK    N YPLP I+ L  ++QG+T+F+K+DL+S YH +R++ GD  K
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNASAVFMDLMNKVFREFLDTFVIVFIDDILIYSKKEAEHEEHLRMVLETLRDNKLYAKFSNCEFWLKQVSLLGHVVSKAG
         AFR   G +E++VM +G++ A A F   +N +  E  ++ V+ ++DDILI+SK E+EH +H++ VL+ L++  L    + CEF   QV  +G+ +S+ G
Subjt:  TAFRSRYGHYEFIVMSFGLTNASAVFMDLMNKVFREFLDTFVIVFIDDILIYSKKEAEHEEHLRMVLETLRDNKLYAKFSNCEFWLKQVSLLGHVVSKAG

Query:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVL-------------------T
         +     I+ V  W +P    E+R FLG   Y R+F+   S++  PL  L +K   + W+     + +N+KQ LV+ PVL                    
Subjt:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVL-------------------T

Query:  GKV------------VAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHP
        G V            V Y S ++   + NY   D E+ A++ +LK WRHYL    E  +I TDH++L    T +    N R  RW   ++D++ EI Y P
Subjt:  GKV------------VAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHP

Query:  GKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERR--
        G AN +ADALSR       ++    P+ +D E   I          + Q+++    + +++   +ND  L+    L    + VE ++    GLL   +  
Subjt:  GKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERR--

Query:  LCVPSD-RLPRTL-----------------------------------------------------------------------------------RGFT
        + +P+D +L RT+                                                                                    G+ 
Subjt:  LCVPSD-RLPRTL-----------------------------------------------------------------------------------RGFT

Query:  VIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACELE
         ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR     
Subjt:  VIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACELE

Query:  FPSSWDSHLYLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSTQKSYADVRRKDL-EFEVGDKVF
         P++W  H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T +  Q ++  ++T     K Y D++ +++ EF+ GD V 
Subjt:  FPSSWDSHLYLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSTQKSYADVRRKDL-EFEVGDKVF

Query:  LKVAPMRGVLRFERRGKLSPRFVGPFEILERIDPVAYRLALPPSLSTV-HDVFHVSMLRK
        +K     G L   +  KL+P F GPF +L++  P  Y L LP S+  +    FHVS L K
Subjt:  LKVAPMRGVLRFERRGKLSPRFVGPFEILERIDPVAYRLALPPSLSTV-HDVFHVSMLRK

P0CT35 Transposon Tf2-2 polyprotein

8.4e-105

29.42

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Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        + P +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK    N YPLP I+ L  ++QG+T+F+K+DL+S YH +R++ GD  K
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNASAVFMDLMNKVFREFLDTFVIVFIDDILIYSKKEAEHEEHLRMVLETLRDNKLYAKFSNCEFWLKQVSLLGHVVSKAG
         AFR   G +E++VM +G++ A A F   +N +  E  ++ V+ ++DDILI+SK E+EH +H++ VL+ L++  L    + CEF   QV  +G+ +S+ G
Subjt:  TAFRSRYGHYEFIVMSFGLTNASAVFMDLMNKVFREFLDTFVIVFIDDILIYSKKEAEHEEHLRMVLETLRDNKLYAKFSNCEFWLKQVSLLGHVVSKAG

Query:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVL-------------------T
         +     I+ V  W +P    E+R FLG   Y R+F+   S++  PL  L +K   + W+     + +N+KQ LV+ PVL                    
Subjt:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVL-------------------T

Query:  GKV------------VAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHP
        G V            V Y S ++   + NY   D E+ A++ +LK WRHYL    E  +I TDH++L    T +    N R  RW   ++D++ EI Y P
Subjt:  GKV------------VAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHP

Query:  GKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERR--
        G AN +ADALSR       ++    P+ +D E   I          + Q+++    + +++   +ND  L+    L    + VE ++    GLL   +  
Subjt:  GKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERR--

Query:  LCVPSD-RLPRTL-----------------------------------------------------------------------------------RGFT
        + +P+D +L RT+                                                                                    G+ 
Subjt:  LCVPSD-RLPRTL-----------------------------------------------------------------------------------RGFT

Query:  VIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACELE
         ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR     
Subjt:  VIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACELE

Query:  FPSSWDSHLYLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSTQKSYADVRRKDL-EFEVGDKVF
         P++W  H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T +  Q ++  ++T     K Y D++ +++ EF+ GD V 
Subjt:  FPSSWDSHLYLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSTQKSYADVRRKDL-EFEVGDKVF

Query:  LKVAPMRGVLRFERRGKLSPRFVGPFEILERIDPVAYRLALPPSLSTV-HDVFHVSMLRK
        +K     G L   +  KL+P F GPF +L++  P  Y L LP S+  +    FHVS L K
Subjt:  LKVAPMRGVLRFERRGKLSPRFVGPFEILERIDPVAYRLALPPSLSTV-HDVFHVSMLRK

P0CT36 Transposon Tf2-3 polyprotein

8.4e-105

29.42

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Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        + P +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK    N YPLP I+ L  ++QG+T+F+K+DL+S YH +R++ GD  K
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNASAVFMDLMNKVFREFLDTFVIVFIDDILIYSKKEAEHEEHLRMVLETLRDNKLYAKFSNCEFWLKQVSLLGHVVSKAG
         AFR   G +E++VM +G++ A A F   +N +  E  ++ V+ ++DDILI+SK E+EH +H++ VL+ L++  L    + CEF   QV  +G+ +S+ G
Subjt:  TAFRSRYGHYEFIVMSFGLTNASAVFMDLMNKVFREFLDTFVIVFIDDILIYSKKEAEHEEHLRMVLETLRDNKLYAKFSNCEFWLKQVSLLGHVVSKAG

Query:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVL-------------------T
         +     I+ V  W +P    E+R FLG   Y R+F+   S++  PL  L +K   + W+     + +N+KQ LV+ PVL                    
Subjt:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVL-------------------T

Query:  GKV------------VAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHP
        G V            V Y S ++   + NY   D E+ A++ +LK WRHYL    E  +I TDH++L    T +    N R  RW   ++D++ EI Y P
Subjt:  GKV------------VAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHP

Query:  GKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERR--
        G AN +ADALSR       ++    P+ +D E   I          + Q+++    + +++   +ND  L+    L    + VE ++    GLL   +  
Subjt:  GKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERR--

Query:  LCVPSD-RLPRTL-----------------------------------------------------------------------------------RGFT
        + +P+D +L RT+                                                                                    G+ 
Subjt:  LCVPSD-RLPRTL-----------------------------------------------------------------------------------RGFT

Query:  VIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACELE
         ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR     
Subjt:  VIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACELE

Query:  FPSSWDSHLYLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSTQKSYADVRRKDL-EFEVGDKVF
         P++W  H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T +  Q ++  ++T     K Y D++ +++ EF+ GD V 
Subjt:  FPSSWDSHLYLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSTQKSYADVRRKDL-EFEVGDKVF

Query:  LKVAPMRGVLRFERRGKLSPRFVGPFEILERIDPVAYRLALPPSLSTV-HDVFHVSMLRK
        +K     G L   +  KL+P F GPF +L++  P  Y L LP S+  +    FHVS L K
Subjt:  LKVAPMRGVLRFERRGKLSPRFVGPFEILERIDPVAYRLALPPSLSTV-HDVFHVSMLRK

P0CT37 Transposon Tf2-4 polyprotein

8.4e-105

29.42

Show/hide

Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        + P +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK    N YPLP I+ L  ++QG+T+F+K+DL+S YH +R++ GD  K
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNASAVFMDLMNKVFREFLDTFVIVFIDDILIYSKKEAEHEEHLRMVLETLRDNKLYAKFSNCEFWLKQVSLLGHVVSKAG
         AFR   G +E++VM +G++ A A F   +N +  E  ++ V+ ++DDILI+SK E+EH +H++ VL+ L++  L    + CEF   QV  +G+ +S+ G
Subjt:  TAFRSRYGHYEFIVMSFGLTNASAVFMDLMNKVFREFLDTFVIVFIDDILIYSKKEAEHEEHLRMVLETLRDNKLYAKFSNCEFWLKQVSLLGHVVSKAG

Query:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVL-------------------T
         +     I+ V  W +P    E+R FLG   Y R+F+   S++  PL  L +K   + W+     + +N+KQ LV+ PVL                    
Subjt:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVL-------------------T

Query:  GKV------------VAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHP
        G V            V Y S ++   + NY   D E+ A++ +LK WRHYL    E  +I TDH++L    T +    N R  RW   ++D++ EI Y P
Subjt:  GKV------------VAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHP

Query:  GKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERR--
        G AN +ADALSR       ++    P+ +D E   I          + Q+++    + +++   +ND  L+    L    + VE ++    GLL   +  
Subjt:  GKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERR--

Query:  LCVPSD-RLPRTL-----------------------------------------------------------------------------------RGFT
        + +P+D +L RT+                                                                                    G+ 
Subjt:  LCVPSD-RLPRTL-----------------------------------------------------------------------------------RGFT

Query:  VIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACELE
         ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR     
Subjt:  VIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACELE

Query:  FPSSWDSHLYLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSTQKSYADVRRKDL-EFEVGDKVF
         P++W  H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T +  Q ++  ++T     K Y D++ +++ EF+ GD V 
Subjt:  FPSSWDSHLYLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSTQKSYADVRRKDL-EFEVGDKVF

Query:  LKVAPMRGVLRFERRGKLSPRFVGPFEILERIDPVAYRLALPPSLSTV-HDVFHVSMLRK
        +K     G L   +  KL+P F GPF +L++  P  Y L LP S+  +    FHVS L K
Subjt:  LKVAPMRGVLRFERRGKLSPRFVGPFEILERIDPVAYRLALPPSLSTV-HDVFHVSMLRK

P0CT41 Transposon Tf2-12 polyprotein

8.4e-105

29.42

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Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        + P +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK    N YPLP I+ L  ++QG+T+F+K+DL+S YH +R++ GD  K
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNASAVFMDLMNKVFREFLDTFVIVFIDDILIYSKKEAEHEEHLRMVLETLRDNKLYAKFSNCEFWLKQVSLLGHVVSKAG
         AFR   G +E++VM +G++ A A F   +N +  E  ++ V+ ++DDILI+SK E+EH +H++ VL+ L++  L    + CEF   QV  +G+ +S+ G
Subjt:  TAFRSRYGHYEFIVMSFGLTNASAVFMDLMNKVFREFLDTFVIVFIDDILIYSKKEAEHEEHLRMVLETLRDNKLYAKFSNCEFWLKQVSLLGHVVSKAG

Query:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVL-------------------T
         +     I+ V  W +P    E+R FLG   Y R+F+   S++  PL  L +K   + W+     + +N+KQ LV+ PVL                    
Subjt:  VSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVL-------------------T

Query:  GKV------------VAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHP
        G V            V Y S ++   + NY   D E+ A++ +LK WRHYL    E  +I TDH++L    T +    N R  RW   ++D++ EI Y P
Subjt:  GKV------------VAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHP

Query:  GKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERR--
        G AN +ADALSR       ++    P+ +D E   I          + Q+++    + +++   +ND  L+    L    + VE ++    GLL   +  
Subjt:  GKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERR--

Query:  LCVPSD-RLPRTL-----------------------------------------------------------------------------------RGFT
        + +P+D +L RT+                                                                                    G+ 
Subjt:  LCVPSD-RLPRTL-----------------------------------------------------------------------------------RGFT

Query:  VIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACELE
         ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR     
Subjt:  VIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACELE

Query:  FPSSWDSHLYLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSTQKSYADVRRKDL-EFEVGDKVF
         P++W  H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T +  Q ++  ++T     K Y D++ +++ EF+ GD V 
Subjt:  FPSSWDSHLYLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSTQKSYADVRRKDL-EFEVGDKVF

Query:  LKVAPMRGVLRFERRGKLSPRFVGPFEILERIDPVAYRLALPPSLSTV-HDVFHVSMLRK
        +K     G L   +  KL+P F GPF +L++  P  Y L LP S+  +    FHVS L K
Subjt:  LKVAPMRGVLRFERRGKLSPRFVGPFEILERIDPVAYRLALPPSLSTV-HDVFHVSMLRK

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

2.6e-24

44.63

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Query:  HLRMVLETLRDNKLYAKFSNCEFWLKQVSLLG--HVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVW
        HL MVL+    ++ YA    C F   Q++ LG  H++S  GVS DPAK+EA+ GW  P   +E+R FLGL GYYRRFV+N+ +I  PLT+L +K +   W
Subjt:  HLRMVLETLRDNKLYAKFSNCEFWLKQVSLLG--HVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVW

Query:  SKACEDSFQNLKQKLVTAPVL
        ++    +F+ LK  + T PVL
Subjt:  SKACEDSFQNLKQKLVTAPVL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCCCCCGCAGAGCTGAAAGAACTGAAGGTGCAGTTACAGGAATTGCTTGATAAGGGATTCATTCGACCGAGCGTGTCACCTTGGGGTGCGCCAGTTTTATTCGTTAA
GAAGAAGGATGGATCGATGCGTCTATGCATTGACTATAGGGAGTTGAACAAGGTAACCGTAAAGAACAGATATCCCTTGCCCAGGATCGACGATCTATTTGACCAGTTAC
AGGGAGCCACAGTGTTCTCTAAGATTGATCTTCGGTCGGGATACCATCAGCTGAGGATTAAGGATGGTGATGTACCAAAGACAGCATTTCGTTCCAGGTATGGACACTAC
GAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTTCGGCAGTGTTTATGGACTTGATGAACAAAGTGTTTAGGGAGTTCCTAGATACTTTTGTGATCGTGTTTATCGA
CGATATCTTGATATACTCCAAGAAGGAGGCCGAACATGAGGAGCATTTACGTATGGTTTTGGAAACACTTCGGGATAATAAGTTGTATGCAAAGTTCTCGAACTGCGAGT
TTTGGCTGAAGCAGGTGTCCTTACTGGGCCACGTGGTTTCTAAGGCTGGAGTCTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCGGTTGGACCCGACCTTCCACAGTC
AGTGAGGTTCGTAGCTTTCTGGGTTTAGCAGGTTATTATCGACGGTTTGTGGAGAACTTTTCTCGTATAGCTACTCCTCTTACTCAGTTGACCAGGAAGGGAGCTCCTTT
TGTTTGGAGCAAGGCATGTGAGGACAGTTTCCAGAACCTTAAACAGAAGCTAGTTACCGCACCGGTTCTTACTGGTAAGGTGGTCGCTTATGCGTCTCGTCAGTTGAAGA
GTCATGAGCAGAACTACCCTACACATGATTTAGAGTTGGCAGCAGTGGTTTTTGCTTTGAAAATATGGAGGCATTACTTATATGGTGAAAAGATACAGATATTCACGGAT
CATAAGAGCTTGAAATACTTCTTTACTCAGAAAGAATTGAATATGAGACAGCGAAGGTGGCTTGAGTTAGTGAAGGATTACGATTGTGAGATACTGTATCATCCAGGCAA
GGCAAATGTGGTAGCTGATGCTCTTAGTAGAAAGGTATCACATTCGGCAGCACTTATTACCCGACAGGCCCCATTGCATCGGGATCTCGAGCGGGCTGAGATTGCAGTGT
CAGTGGGGGCAGTCACTATGCAGTTAGCCCAGTTGACGGTACAGCCGACTTTGAGGCAAAGGATCATTGATGCTCAGAGTAACGATCCTTATTTGGTTGAGAAACGTGGC
CTAGCAGAGGCAGGGCAAGCGGTTGAGTTCTCATTATCCTCTGATGGTGGACTTTTGTTTGAGAGACGCCTCTGTGTTCCGTCAGATAGACTGCCGAGAACTCTAAGGGG
TTTTACAGTGATTTGGGTTGTGGTGGACAGACTTACCAAATCAGCGCACTTCGTTCCGGGTAAATCCACCTATACTGCTAGTAAGTGGGCACAGCTGTACATGTCTGAGA
TAGTGAGATTGCATGGAGTGCCAGTGTCAATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTCTGGAAGGGTTTGCAGACTGCTATGGGCACGAGGTTAGACTTT
AGTACAGCTTTCCATCCACAGACTGACGGTCAGACTGAGCGTCTAAACCAAGTTTTAGAGGATATGTTGCGAGCGTGTGAATTGGAATTTCCAAGTAGCTGGGACTCCCA
CTTATATTTGATGGAATTTGCTTATAATAACAGTTATCAGGCTACTATTGGCATGGCACCATTTGAGGCCTTGTACGGCAAATGTTGTAGATCCCCGGTTTGCTGGGGTG
AGGTGGGTGAGCAGAGATTGATGGGCCCTGAGTTAGTTCAGTCTACCAACGAAGCGATACAGAAGATTAGATCACGCATGCATACCGCTCAGAGTACACAAAAGAGTTAT
GCAGATGTGAGGCGGAAGGATCTTGAGTTTGAGGTAGGGGACAAGGTGTTCTTAAAGGTAGCACCTATGAGAGGTGTCTTACGATTTGAAAGGAGGGGAAAGTTGAGTCC
CCGTTTTGTTGGGCCGTTTGAGATTCTGGAGCGGATTGACCCTGTAGCTTATCGCTTGGCGTTGCCACCATCACTCTCGACAGTTCATGATGTGTTTCATGTTTCTATGT
TGAGGAAATTGATGAAAACTTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHY
EFIVMSFGLTNASAVFMDLMNKVFREFLDTFVIVFIDDILIYSKKEAEHEEHLRMVLETLRDNKLYAKFSNCEFWLKQVSLLGHVVSKAGVSVDPAKIEAVTGWTRPSTV
SEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTD
HKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRG
LAEAGQAVEFSLSSDGGLLFERRLCVPSDRLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDF
STAFHPQTDGQTERLNQVLEDMLRACELEFPSSWDSHLYLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSTQKSY
ADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIDPVAYRLALPPSLSTVHDVFHVSMLRKLMKT

Cmc11g0300971 (gene) of Melon (Charmono) v1.1 genome