; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc11g0301421 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc11g0301421
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase domain-containing protein
Genome locationCMiso1.1chr11:21681297..21682052
RNA-Seq ExpressionCmc11g0301421
SyntenyCmc11g0301421
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054385.1 uncharacterized protein E6C27_scaffold24G001280 [Cucumis melo var. makuwa]1.6e-14298.8Show/hide
Query:  MPGLDPNVAVHHLAIKLGYGPIKQAQRRFRPELIPQIEIEVNKLIEVGFIREVKYPTWIANIVPVRKKNGQLCVCVDFRGLNNTCPKDDFPLPITEIMVD
        MPGLDPNVAVHHLAIKLGYGPIKQAQRRFRPELIPQIEIEVNKLIEVGFIREVKYPTWI NIVPVRKKNGQLCVCVDF GLNNTCPKD+FPLPITEIMVD
Subjt:  MPGLDPNVAVHHLAIKLGYGPIKQAQRRFRPELIPQIEIEVNKLIEVGFIREVKYPTWIANIVPVRKKNGQLCVCVDFRGLNNTCPKDDFPLPITEIMVD

Query:  ATTGHEALSFMDGSSGYNQIRMALSDEEMTAFKTPKGIYCYKVMPFGLKNARATYQRAMQKVFDDMLHKYVENYVNDLVVKSKRRQDHLKDLKVVFDHLR
        ATTGHEALSFMDGSSGYNQIRMALSDEEMTAFKTPKGIYCYKVMPFGLKNARATYQRAMQKVFDDMLHKYVENYVNDLVVKSKRRQDHLKDLKVVFDHLR
Subjt:  ATTGHEALSFMDGSSGYNQIRMALSDEEMTAFKTPKGIYCYKVMPFGLKNARATYQRAMQKVFDDMLHKYVENYVNDLVVKSKRRQDHLKDLKVVFDHLR

Query:  KYQLRINPLKCAFGVTSGKFLGFIVRHREIEIDQSKIDAIQKKPRPMICMT
        KYQLRINPLKCAFGVTSGKFLGFIVRHREIEIDQSKIDAIQKKPRPMICMT
Subjt:  KYQLRINPLKCAFGVTSGKFLGFIVRHREIEIDQSKIDAIQKKPRPMICMT

TYK28756.1 uncharacterized protein E5676_scaffold403G001090 [Cucumis melo var. makuwa]3.9e-12892.28Show/hide
Query:  MPGLDPNVAVHHLAIKLGYGPIKQAQRRFRPELIPQIEIEVNKLIEVGFIREVKYPTWIANIVPVRKKNGQLCVCVDFRGLNNTCPKDDFPLPITEIMVD
        MPGLDP V VHHLAIK GY PIKQAQRRFRPELIPQIE+EVNKLIE GFIREVKYPTWIANIVPVRKKNGQL VCVDFR LNN CPKDDFPLPITEIMVD
Subjt:  MPGLDPNVAVHHLAIKLGYGPIKQAQRRFRPELIPQIEIEVNKLIEVGFIREVKYPTWIANIVPVRKKNGQLCVCVDFRGLNNTCPKDDFPLPITEIMVD

Query:  ATTGHEALSFMDGSSGYNQIRMALSDEEMTAFKTPKGIYCYKVMPFGLKNARATYQRAMQKVFDDMLHKYVENYVNDLVVKSKRRQDHLKDLKVVFDHLR
        ATTGHEALSFMDGSSGYNQIR+ALSDEEMTAF+TPKGIYCYKVMPFGLKNA ATYQRAMQKVFDDMLHKYVE YV+DLVVKSKRRQDHLKDLKVVFD LR
Subjt:  ATTGHEALSFMDGSSGYNQIRMALSDEEMTAFKTPKGIYCYKVMPFGLKNARATYQRAMQKVFDDMLHKYVENYVNDLVVKSKRRQDHLKDLKVVFDHLR

Query:  KYQLRINPLKCAFGVTSGKFLGFIVRHREIEIDQSKIDAIQKKPRP
        KYQLR+NPLKCAFG+TSGKFLGFIVRHR IEIDQSKIDAIQK PRP
Subjt:  KYQLRINPLKCAFGVTSGKFLGFIVRHREIEIDQSKIDAIQKKPRP

XP_031737045.1 uncharacterized protein LOC116402134 [Cucumis sativus]6.7e-12892.28Show/hide
Query:  MPGLDPNVAVHHLAIKLGYGPIKQAQRRFRPELIPQIEIEVNKLIEVGFIREVKYPTWIANIVPVRKKNGQLCVCVDFRGLNNTCPKDDFPLPITEIMVD
        MPGLDP VAVHHLAIK GY PIKQAQRRFRPELIPQIE+EVNKLIE GFIREVKYPTWIANIVPVRKKNGQL VCVDFR LNN CPKDDFPLPITEIMVD
Subjt:  MPGLDPNVAVHHLAIKLGYGPIKQAQRRFRPELIPQIEIEVNKLIEVGFIREVKYPTWIANIVPVRKKNGQLCVCVDFRGLNNTCPKDDFPLPITEIMVD

Query:  ATTGHEALSFMDGSSGYNQIRMALSDEEMTAFKTPKGIYCYKVMPFGLKNARATYQRAMQKVFDDMLHKYVENYVNDLVVKSKRRQDHLKDLKVVFDHLR
        ATTGHEALSFMDGSSGYNQIRMALSDEEMTAF+TPKGIYCYKVMPFGLKNA ATYQRAMQKVFDDMLH+YVE YV+DLVVK+KRRQDHLKDLKVVFD LR
Subjt:  ATTGHEALSFMDGSSGYNQIRMALSDEEMTAFKTPKGIYCYKVMPFGLKNARATYQRAMQKVFDDMLHKYVENYVNDLVVKSKRRQDHLKDLKVVFDHLR

Query:  KYQLRINPLKCAFGVTSGKFLGFIVRHREIEIDQSKIDAIQKKPRP
        KYQLR+NPLKCAFGVTSGKFLGFIVRHR IEIDQSKIDAIQK  RP
Subjt:  KYQLRINPLKCAFGVTSGKFLGFIVRHREIEIDQSKIDAIQKKPRP

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]6.7e-12892.28Show/hide
Query:  MPGLDPNVAVHHLAIKLGYGPIKQAQRRFRPELIPQIEIEVNKLIEVGFIREVKYPTWIANIVPVRKKNGQLCVCVDFRGLNNTCPKDDFPLPITEIMVD
        MPGLDP VAVHHLAIK GY PIKQAQRRFRPELIPQIE+EVNKLIE GFIREVKYPTWIANIVPVRKKNGQL VCVDFR LNN CPKDDFPLPITEIMVD
Subjt:  MPGLDPNVAVHHLAIKLGYGPIKQAQRRFRPELIPQIEIEVNKLIEVGFIREVKYPTWIANIVPVRKKNGQLCVCVDFRGLNNTCPKDDFPLPITEIMVD

Query:  ATTGHEALSFMDGSSGYNQIRMALSDEEMTAFKTPKGIYCYKVMPFGLKNARATYQRAMQKVFDDMLHKYVENYVNDLVVKSKRRQDHLKDLKVVFDHLR
        ATTGHEALSFMDGSSGYNQIRMALSDEEMTAF+TPKGIYCYKVMPFGLKNA ATYQRAMQKVFDDMLH+YVE YV+DLVVK+KRRQDHLKDLKVVFD LR
Subjt:  ATTGHEALSFMDGSSGYNQIRMALSDEEMTAFKTPKGIYCYKVMPFGLKNARATYQRAMQKVFDDMLHKYVENYVNDLVVKSKRRQDHLKDLKVVFDHLR

Query:  KYQLRINPLKCAFGVTSGKFLGFIVRHREIEIDQSKIDAIQKKPRP
        KYQLR+NPLKCAFGVTSGKFLGFIVRHR IEIDQSKIDAIQK  RP
Subjt:  KYQLRINPLKCAFGVTSGKFLGFIVRHREIEIDQSKIDAIQKKPRP

XP_031742390.1 uncharacterized protein LOC116401672 [Cucumis sativus]6.7e-12892.28Show/hide
Query:  MPGLDPNVAVHHLAIKLGYGPIKQAQRRFRPELIPQIEIEVNKLIEVGFIREVKYPTWIANIVPVRKKNGQLCVCVDFRGLNNTCPKDDFPLPITEIMVD
        MPGLDP VAVHHLAIK GY PIKQAQRRFRPELIPQIE+EVNKLIE GFIREVKYPTWIANIVPVRKKNGQL VCVDFR LNN CPKDDFPLPITEIMVD
Subjt:  MPGLDPNVAVHHLAIKLGYGPIKQAQRRFRPELIPQIEIEVNKLIEVGFIREVKYPTWIANIVPVRKKNGQLCVCVDFRGLNNTCPKDDFPLPITEIMVD

Query:  ATTGHEALSFMDGSSGYNQIRMALSDEEMTAFKTPKGIYCYKVMPFGLKNARATYQRAMQKVFDDMLHKYVENYVNDLVVKSKRRQDHLKDLKVVFDHLR
        ATTGHEALSFMDGSSGYNQIRMALSDEEMTAF+TPKGIYCYKVMPFGLKNA ATYQRAMQKVFDDMLH+YVE YV+DLVVK+KRRQDHLKDLKVVFD LR
Subjt:  ATTGHEALSFMDGSSGYNQIRMALSDEEMTAFKTPKGIYCYKVMPFGLKNARATYQRAMQKVFDDMLHKYVENYVNDLVVKSKRRQDHLKDLKVVFDHLR

Query:  KYQLRINPLKCAFGVTSGKFLGFIVRHREIEIDQSKIDAIQKKPRP
        KYQLR+NPLKCAFGVTSGKFLGFIVRHR IEIDQSKIDAIQK  RP
Subjt:  KYQLRINPLKCAFGVTSGKFLGFIVRHREIEIDQSKIDAIQKKPRP

TrEMBL top hitse value%identityAlignment
A0A5A7SPV8 Ribonuclease H1.0e-12691.46Show/hide
Query:  MPGLDPNVAVHHLAIKLGYGPIKQAQRRFRPELIPQIEIEVNKLIEVGFIREVKYPTWIANIVPVRKKNGQLCVCVDFRGLNNTCPKDDFPLPITEIMVD
        MPGLDP VAVHHLAIK GY  IKQAQRRFRPELIPQI++EVNKLIE GFIREVKYPTWIANIVPVRKKNGQL VCVDFR LNN CPKDDFPLPITEIMVD
Subjt:  MPGLDPNVAVHHLAIKLGYGPIKQAQRRFRPELIPQIEIEVNKLIEVGFIREVKYPTWIANIVPVRKKNGQLCVCVDFRGLNNTCPKDDFPLPITEIMVD

Query:  ATTGHEALSFMDGSSGYNQIRMALSDEEMTAFKTPKGIYCYKVMPFGLKNARATYQRAMQKVFDDMLHKYVENYVNDLVVKSKRRQDHLKDLKVVFDHLR
        ATTGHE LSFMDGSSGYNQIRMALSDEEMTAF+TPKGIYCYKV+PFGLKNA ATYQRAMQKVFDDMLHKYVE YV+DLVVKSKRRQDHLKDLKVVFD LR
Subjt:  ATTGHEALSFMDGSSGYNQIRMALSDEEMTAFKTPKGIYCYKVMPFGLKNARATYQRAMQKVFDDMLHKYVENYVNDLVVKSKRRQDHLKDLKVVFDHLR

Query:  KYQLRINPLKCAFGVTSGKFLGFIVRHREIEIDQSKIDAIQKKPRP
        KYQLR+NPLKCAF VTSGKFLGFIVRHR IEIDQSKIDAIQK PRP
Subjt:  KYQLRINPLKCAFGVTSGKFLGFIVRHREIEIDQSKIDAIQKKPRP

A0A5A7UL24 Reverse transcriptase domain-containing protein7.9e-14398.8Show/hide
Query:  MPGLDPNVAVHHLAIKLGYGPIKQAQRRFRPELIPQIEIEVNKLIEVGFIREVKYPTWIANIVPVRKKNGQLCVCVDFRGLNNTCPKDDFPLPITEIMVD
        MPGLDPNVAVHHLAIKLGYGPIKQAQRRFRPELIPQIEIEVNKLIEVGFIREVKYPTWI NIVPVRKKNGQLCVCVDF GLNNTCPKD+FPLPITEIMVD
Subjt:  MPGLDPNVAVHHLAIKLGYGPIKQAQRRFRPELIPQIEIEVNKLIEVGFIREVKYPTWIANIVPVRKKNGQLCVCVDFRGLNNTCPKDDFPLPITEIMVD

Query:  ATTGHEALSFMDGSSGYNQIRMALSDEEMTAFKTPKGIYCYKVMPFGLKNARATYQRAMQKVFDDMLHKYVENYVNDLVVKSKRRQDHLKDLKVVFDHLR
        ATTGHEALSFMDGSSGYNQIRMALSDEEMTAFKTPKGIYCYKVMPFGLKNARATYQRAMQKVFDDMLHKYVENYVNDLVVKSKRRQDHLKDLKVVFDHLR
Subjt:  ATTGHEALSFMDGSSGYNQIRMALSDEEMTAFKTPKGIYCYKVMPFGLKNARATYQRAMQKVFDDMLHKYVENYVNDLVVKSKRRQDHLKDLKVVFDHLR

Query:  KYQLRINPLKCAFGVTSGKFLGFIVRHREIEIDQSKIDAIQKKPRPMICMT
        KYQLRINPLKCAFGVTSGKFLGFIVRHREIEIDQSKIDAIQKKPRPMICMT
Subjt:  KYQLRINPLKCAFGVTSGKFLGFIVRHREIEIDQSKIDAIQKKPRPMICMT

A0A5A7UMY2 Reverse transcriptase domain-containing protein1.3e-12490.65Show/hide
Query:  MPGLDPNVAVHHLAIKLGYGPIKQAQRRFRPELIPQIEIEVNKLIEVGFIREVKYPTWIANIVPVRKKNGQLCVCVDFRGLNNTCPKDDFPLPITEIMVD
        MP LDP VAVH LAIK GY PIKQAQRRFRPELIPQIE+EVNKLIE GFIREVKYPTWIANIVPVRKKNGQL VCVDFR LNN CPKDDFPLPITEIMVD
Subjt:  MPGLDPNVAVHHLAIKLGYGPIKQAQRRFRPELIPQIEIEVNKLIEVGFIREVKYPTWIANIVPVRKKNGQLCVCVDFRGLNNTCPKDDFPLPITEIMVD

Query:  ATTGHEALSFMDGSSGYNQIRMALSDEEMTAFKTPKGIYCYKVMPFGLKNARATYQRAMQKVFDDMLHKYVENYVNDLVVKSKRRQDHLKDLKVVFDHLR
        ATTGHEALSFMDGSSGYNQIRMALSDEEMT F+TPKGIYCYKVMPFGLKN  ATYQR MQKVFDDMLHKYVE YV+DLVVKSKRRQDHLKDLKVVFD LR
Subjt:  ATTGHEALSFMDGSSGYNQIRMALSDEEMTAFKTPKGIYCYKVMPFGLKNARATYQRAMQKVFDDMLHKYVENYVNDLVVKSKRRQDHLKDLKVVFDHLR

Query:  KYQLRINPLKCAFGVTSGKFLGFIVRHREIEIDQSKIDAIQKKPRP
        KYQLR+NPLKCAFGVTS KFLGFIVR+R IEIDQSKIDAIQK PRP
Subjt:  KYQLRINPLKCAFGVTSGKFLGFIVRHREIEIDQSKIDAIQKKPRP

A0A5D3DXC7 Reverse transcriptase domain-containing protein6.1e-12791.46Show/hide
Query:  MPGLDPNVAVHHLAIKLGYGPIKQAQRRFRPELIPQIEIEVNKLIEVGFIREVKYPTWIANIVPVRKKNGQLCVCVDFRGLNNTCPKDDFPLPITEIMVD
        MPGLDP VAVHHLAIK GY PIKQAQR FRPELIPQIE+EVNKLIE GFIREVKYPTWIANIVPVRKKNGQL VCVDFR LNN CPKDDFPLPITEIMVD
Subjt:  MPGLDPNVAVHHLAIKLGYGPIKQAQRRFRPELIPQIEIEVNKLIEVGFIREVKYPTWIANIVPVRKKNGQLCVCVDFRGLNNTCPKDDFPLPITEIMVD

Query:  ATTGHEALSFMDGSSGYNQIRMALSDEEMTAFKTPKGIYCYKVMPFGLKNARATYQRAMQKVFDDMLHKYVENYVNDLVVKSKRRQDHLKDLKVVFDHLR
        ATTGHEALSFMDGSSGYNQIRM LSDEEMTAF+TPKGIYCYKVMPFGLKN  ATYQR MQKVFDDMLHKYVE YV+DLVVKSKRRQDHLKDLKVVF+ LR
Subjt:  ATTGHEALSFMDGSSGYNQIRMALSDEEMTAFKTPKGIYCYKVMPFGLKNARATYQRAMQKVFDDMLHKYVENYVNDLVVKSKRRQDHLKDLKVVFDHLR

Query:  KYQLRINPLKCAFGVTSGKFLGFIVRHREIEIDQSKIDAIQKKPRP
        KYQLR+NPLKCAFGVTSGKFLGFIVRHR IEIDQSKIDAIQK PRP
Subjt:  KYQLRINPLKCAFGVTSGKFLGFIVRHREIEIDQSKIDAIQKKPRP

A0A5D3DYG9 Reverse transcriptase domain-containing protein1.9e-12892.28Show/hide
Query:  MPGLDPNVAVHHLAIKLGYGPIKQAQRRFRPELIPQIEIEVNKLIEVGFIREVKYPTWIANIVPVRKKNGQLCVCVDFRGLNNTCPKDDFPLPITEIMVD
        MPGLDP V VHHLAIK GY PIKQAQRRFRPELIPQIE+EVNKLIE GFIREVKYPTWIANIVPVRKKNGQL VCVDFR LNN CPKDDFPLPITEIMVD
Subjt:  MPGLDPNVAVHHLAIKLGYGPIKQAQRRFRPELIPQIEIEVNKLIEVGFIREVKYPTWIANIVPVRKKNGQLCVCVDFRGLNNTCPKDDFPLPITEIMVD

Query:  ATTGHEALSFMDGSSGYNQIRMALSDEEMTAFKTPKGIYCYKVMPFGLKNARATYQRAMQKVFDDMLHKYVENYVNDLVVKSKRRQDHLKDLKVVFDHLR
        ATTGHEALSFMDGSSGYNQIR+ALSDEEMTAF+TPKGIYCYKVMPFGLKNA ATYQRAMQKVFDDMLHKYVE YV+DLVVKSKRRQDHLKDLKVVFD LR
Subjt:  ATTGHEALSFMDGSSGYNQIRMALSDEEMTAFKTPKGIYCYKVMPFGLKNARATYQRAMQKVFDDMLHKYVENYVNDLVVKSKRRQDHLKDLKVVFDHLR

Query:  KYQLRINPLKCAFGVTSGKFLGFIVRHREIEIDQSKIDAIQKKPRP
        KYQLR+NPLKCAFG+TSGKFLGFIVRHR IEIDQSKIDAIQK PRP
Subjt:  KYQLRINPLKCAFGVTSGKFLGFIVRHREIEIDQSKIDAIQKKPRP

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein2.2e-2530.95Show/hide
Query:  EVNKLIEVGFIREVKYPTWIANIVPVR---KKNGQLCVCVDFRGLNNTCPKDDFPLPITEIMVDATTGHEALSFMDGSSGYNQIRMALSDEEMTAFKTPK
        E+N+ ++ G IRE K      N  PV    KK G L + VD++ LN     + +PLP+ E ++    G    + +D  S Y+ IR+   DE   AF+ P+
Subjt:  EVNKLIEVGFIREVKYPTWIANIVPVR---KKNGQLCVCVDFRGLNNTCPKDDFPLPITEIMVDATTGHEALSFMDGSSGYNQIRMALSDEEMTAFKTPK

Query:  GIYCYKVMPFGLKNARATYQRAMQKVFDDMLHKYVENYVNDLVVKSKRRQDHLKDLKVVFDHLRKYQLRINPLKCAFGVTSGKFLGFIVRHREIEIDQSK
        G++ Y VMP+G+  A A +Q  +  +  +    +V  Y++D+++ SK   +H+K +K V   L+   L IN  KC F  +  KF+G+ +  +     Q  
Subjt:  GIYCYKVMPFGLKNARATYQRAMQKVFDDMLHKYVENYVNDLVVKSKRRQDHLKDLKVVFDHLRKYQLRINPLKCAFGVTSGKFLGFIVRHREIEIDQSK

Query:  IDAIQKKPRP
        ID + +  +P
Subjt:  IDAIQKKPRP

P0CT41 Transposon Tf2-12 polyprotein2.2e-2530.95Show/hide
Query:  EVNKLIEVGFIREVKYPTWIANIVPVR---KKNGQLCVCVDFRGLNNTCPKDDFPLPITEIMVDATTGHEALSFMDGSSGYNQIRMALSDEEMTAFKTPK
        E+N+ ++ G IRE K      N  PV    KK G L + VD++ LN     + +PLP+ E ++    G    + +D  S Y+ IR+   DE   AF+ P+
Subjt:  EVNKLIEVGFIREVKYPTWIANIVPVR---KKNGQLCVCVDFRGLNNTCPKDDFPLPITEIMVDATTGHEALSFMDGSSGYNQIRMALSDEEMTAFKTPK

Query:  GIYCYKVMPFGLKNARATYQRAMQKVFDDMLHKYVENYVNDLVVKSKRRQDHLKDLKVVFDHLRKYQLRINPLKCAFGVTSGKFLGFIVRHREIEIDQSK
        G++ Y VMP+G+  A A +Q  +  +  +    +V  Y++D+++ SK   +H+K +K V   L+   L IN  KC F  +  KF+G+ +  +     Q  
Subjt:  GIYCYKVMPFGLKNARATYQRAMQKVFDDMLHKYVENYVNDLVVKSKRRQDHLKDLKVVFDHLRKYQLRINPLKCAFGVTSGKFLGFIVRHREIEIDQSK

Query:  IDAIQKKPRP
        ID + +  +P
Subjt:  IDAIQKKPRP

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein1.6e-2836.41Show/hide
Query:  VNKLIEVGFIREVKYPTWIANIVPVRKKNGQLCVCVDFRGLNNTCPKDDFPLPITEIMVDATTGHEALSFMDGSSGYNQIRMALSDEEMTAFKTPKGIYC
        V KL++  FI   K P   + +V V KK+G   +CVD+R LN     D FPLP  + ++      +  + +D  SGY+QI M   D   TAF TP G Y 
Subjt:  VNKLIEVGFIREVKYPTWIANIVPVRKKNGQLCVCVDFRGLNNTCPKDDFPLPITEIMVDATTGHEALSFMDGSSGYNQIRMALSDEEMTAFKTPKGIYC

Query:  YKVMPFGLKNARATYQRAMQKVFDDMLHKYVENYVNDLVVKSKRRQDHLKDLKVVFDHLRKYQLRINPLKCAFGVTSGKFLGFIVRHREIEIDQSKIDAI
        Y VMPFGL NA +T+ R M   F D+  ++V  Y++D+++ S+  ++H K L  V + L+   L +   KC F     +FLG+ +  ++I   Q K  AI
Subjt:  YKVMPFGLKNARATYQRAMQKVFDDMLHKYVENYVNDLVVKSKRRQDHLKDLKVVFDHLRKYQLRINPLKCAFGVTSGKFLGFIVRHREIEIDQSKIDAI

Query:  QKKPRP
        +  P P
Subjt:  QKKPRP

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus1.3e-2532.56Show/hide
Query:  QIEIEVNKLIEVGFIR----EVKYPTWIANIVPVRKKNGQLCVCVDFRGLNNTCPKDDFPLPITEIMVDATTGHEALSFMDGSSGYNQIRMALSDEEMTA
        ++E ++++L++ G IR        P WI    P      Q  + VDF+ LN     D +P+P     + +    +  + +D +SG++QI M  SD   TA
Subjt:  QIEIEVNKLIEVGFIR----EVKYPTWIANIVPVRKKNGQLCVCVDFRGLNNTCPKDDFPLPITEIMVDATTGHEALSFMDGSSGYNQIRMALSDEEMTA

Query:  FKTPKGIYCYKVMPFGLKNARATYQRAMQKVFDDMLHKYVENYVNDLVVKSKRRQDHLKDLKVVFDHLRKYQLRINPLKCAFGVTSGKFLGFIVRHREIE
        F T  G Y +  +PFGLKNA A +QR +  +  + + K    Y++D++V S+    H K+L++V   L K  L++N  K  F  T  +FLG+IV    I+
Subjt:  FKTPKGIYCYKVMPFGLKNARATYQRAMQKVFDDMLHKYVENYVNDLVVKSKRRQDHLKDLKVVFDHLRKYQLRINPLKCAFGVTSGKFLGFIVRHREIE

Query:  IDQSKIDAIQKKPRP
         D  K+ AI + P P
Subjt:  IDQSKIDAIQKKPRP

Q99315 Transposon Ty3-G Gag-Pol polyprotein1.6e-2836.41Show/hide
Query:  VNKLIEVGFIREVKYPTWIANIVPVRKKNGQLCVCVDFRGLNNTCPKDDFPLPITEIMVDATTGHEALSFMDGSSGYNQIRMALSDEEMTAFKTPKGIYC
        V KL++  FI   K P   + +V V KK+G   +CVD+R LN     D FPLP  + ++      +  + +D  SGY+QI M   D   TAF TP G Y 
Subjt:  VNKLIEVGFIREVKYPTWIANIVPVRKKNGQLCVCVDFRGLNNTCPKDDFPLPITEIMVDATTGHEALSFMDGSSGYNQIRMALSDEEMTAFKTPKGIYC

Query:  YKVMPFGLKNARATYQRAMQKVFDDMLHKYVENYVNDLVVKSKRRQDHLKDLKVVFDHLRKYQLRINPLKCAFGVTSGKFLGFIVRHREIEIDQSKIDAI
        Y VMPFGL NA +T+ R M   F D+  ++V  Y++D+++ S+  ++H K L  V + L+   L +   KC F     +FLG+ +  ++I   Q K  AI
Subjt:  YKVMPFGLKNARATYQRAMQKVFDDMLHKYVENYVNDLVVKSKRRQDHLKDLKVVFDHLRKYQLRINPLKCAFGVTSGKFLGFIVRHREIEIDQSKIDAI

Query:  QKKPRP
        +  P P
Subjt:  QKKPRP

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAGGACTTGATCCAAATGTAGCAGTCCATCATCTCGCAATTAAACTAGGGTATGGACCGATTAAGCAAGCACAACGACGTTTTCGACCAGAGCTTATTCCCCAGAT
CGAGATTGAAGTCAACAAGTTGATTGAAGTAGGATTTATTCGCGAGGTCAAATATCCAACATGGATAGCAAACATTGTCCCTGTCAGAAAAAAGAACGGGCAGCTTTGCG
TTTGTGTAGACTTTCGTGGCCTGAATAACACATGCCCTAAAGATGATTTTCCTTTGCCCATTACAGAAATCATGGTTGATGCAACTACTGGACACGAGGCACTGTCCTTT
ATGGATGGGTCGTCTGGATATAATCAAATACGAATGGCCCTTTCAGATGAAGAAATGACAGCTTTCAAGACTCCAAAGGGAATATATTGTTACAAGGTGATGCCCTTTGG
ATTAAAAAATGCTCGTGCCACTTATCAACGTGCTATGCAAAAAGTGTTTGACGATATGCTACATAAGTATGTTGAAAATTACGTTAATGACCTTGTGGTCAAATCCAAGA
GACGACAAGACCATTTGAAGGATCTAAAAGTTGTGTTCGACCACTTGCGAAAATATCAGTTGAGGATAAACCCTCTCAAATGCGCGTTCGGTGTAACTTCAGGAAAGTTT
CTCGGCTTCATTGTAAGACACCGAGAGATCGAGATAGACCAGTCCAAGATTGATGCCATTCAGAAGAAGCCAAGGCCAATGATTTGCATGACCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCAGGACTTGATCCAAATGTAGCAGTCCATCATCTCGCAATTAAACTAGGGTATGGACCGATTAAGCAAGCACAACGACGTTTTCGACCAGAGCTTATTCCCCAGAT
CGAGATTGAAGTCAACAAGTTGATTGAAGTAGGATTTATTCGCGAGGTCAAATATCCAACATGGATAGCAAACATTGTCCCTGTCAGAAAAAAGAACGGGCAGCTTTGCG
TTTGTGTAGACTTTCGTGGCCTGAATAACACATGCCCTAAAGATGATTTTCCTTTGCCCATTACAGAAATCATGGTTGATGCAACTACTGGACACGAGGCACTGTCCTTT
ATGGATGGGTCGTCTGGATATAATCAAATACGAATGGCCCTTTCAGATGAAGAAATGACAGCTTTCAAGACTCCAAAGGGAATATATTGTTACAAGGTGATGCCCTTTGG
ATTAAAAAATGCTCGTGCCACTTATCAACGTGCTATGCAAAAAGTGTTTGACGATATGCTACATAAGTATGTTGAAAATTACGTTAATGACCTTGTGGTCAAATCCAAGA
GACGACAAGACCATTTGAAGGATCTAAAAGTTGTGTTCGACCACTTGCGAAAATATCAGTTGAGGATAAACCCTCTCAAATGCGCGTTCGGTGTAACTTCAGGAAAGTTT
CTCGGCTTCATTGTAAGACACCGAGAGATCGAGATAGACCAGTCCAAGATTGATGCCATTCAGAAGAAGCCAAGGCCAATGATTTGCATGACCTAA
Protein sequenceShow/hide protein sequence
MPGLDPNVAVHHLAIKLGYGPIKQAQRRFRPELIPQIEIEVNKLIEVGFIREVKYPTWIANIVPVRKKNGQLCVCVDFRGLNNTCPKDDFPLPITEIMVDATTGHEALSF
MDGSSGYNQIRMALSDEEMTAFKTPKGIYCYKVMPFGLKNARATYQRAMQKVFDDMLHKYVENYVNDLVVKSKRRQDHLKDLKVVFDHLRKYQLRINPLKCAFGVTSGKF
LGFIVRHREIEIDQSKIDAIQKKPRPMICMT