; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc11g0302071 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc11g0302071
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag/pol protein
Genome locationCMiso1.1chr11:22781962..22782744
RNA-Seq ExpressionCmc11g0302071
SyntenyCmc11g0302071
Gene Ontology termsNA
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026233.1 gag/pol protein [Cucumis melo var. makuwa]2.1e-13285.56Show/hide
Query:  MVRSMMSYAHLPNSFWGYEVQTTVYILNCVPSKSVSETPLKLWNDHKGSLHHFRTWGCLAHVLETNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVF
        MVRSMMSYAHLPNSFWGY VQT VYILNCVPSKSVSETPLKLWN HKGSL HFR WGC AHVLE NPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVF
Subjt:  MVRSMMSYAHLPNSFWGYEVQTTVYILNCVPSKSVSETPLKLWNDHKGSLHHFRTWGCLAHVLETNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVF

Query:  VPTNAIFLKEDHIREHKPRSKIVLNELSNETTEPST----------RVVHIDSSTGIHQPQSLREPRRSGRVTNVPIHYMSLTKTLTVIFNNNIEDPLTF
        V TNA FL+EDHIREHKPRSKIVLNELS ETTEPST          RVVH+ SST  HQPQSLREPRRSGRVTN+PI YMSLT+TLTVI + +IEDPLTF
Subjt:  VPTNAIFLKEDHIREHKPRSKIVLNELSNETTEPST----------RVVHIDSSTGIHQPQSLREPRRSGRVTNVPIHYMSLTKTLTVIFNNNIEDPLTF

Query:  KKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKPIGCKWIYKRKKGADGNIQTFKARLVANGYT
        KKAMEDVDKDEWIKAMNL+LESMYFNSVWDLVDQPD +KPIGCKWIYKRK+GADG +QTFKARLVA GYT
Subjt:  KKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKPIGCKWIYKRKKGADGNIQTFKARLVANGYT

KAA0035879.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-13185.19Show/hide
Query:  MVRSMMSYAHLPNSFWGYEVQTTVYILNCVPSKSVSETPLKLWNDHKGSLHHFRTWGCLAHVLETNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVF
        MVRSMMSYAHLPNSFWGY VQT VYILNCVPSKSVSETPLKLWN  KGSL HFR WGC AHVLE NPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVF
Subjt:  MVRSMMSYAHLPNSFWGYEVQTTVYILNCVPSKSVSETPLKLWNDHKGSLHHFRTWGCLAHVLETNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVF

Query:  VPTNAIFLKEDHIREHKPRSKIVLNELSNETTEPS----------TRVVHIDSSTGIHQPQSLREPRRSGRVTNVPIHYMSLTKTLTVIFNNNIEDPLTF
        V TNA FL+EDHIREHKPRSKIVLNELS ETTEPS          TRVVH+ SST  HQPQSLREPRRSGRVTN+PI YMSLT+TLTVI + +IEDPLTF
Subjt:  VPTNAIFLKEDHIREHKPRSKIVLNELSNETTEPS----------TRVVHIDSSTGIHQPQSLREPRRSGRVTNVPIHYMSLTKTLTVIFNNNIEDPLTF

Query:  KKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKPIGCKWIYKRKKGADGNIQTFKARLVANGYT
        KKAMEDVDKDEWIKAMNL+LESMYFNSVWDLVDQPD +KPIGCKWIYKRK+GADG +QTFKARLVA GYT
Subjt:  KKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKPIGCKWIYKRKKGADGNIQTFKARLVANGYT

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-13185.19Show/hide
Query:  MVRSMMSYAHLPNSFWGYEVQTTVYILNCVPSKSVSETPLKLWNDHKGSLHHFRTWGCLAHVLETNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVF
        MVRSMMSYAHLPNSFWGY VQT VYILNCVPSKSVSETPLKLWN  KGSL HFR WGC AHVLE NPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVF
Subjt:  MVRSMMSYAHLPNSFWGYEVQTTVYILNCVPSKSVSETPLKLWNDHKGSLHHFRTWGCLAHVLETNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVF

Query:  VPTNAIFLKEDHIREHKPRSKIVLNELSNETTEPS----------TRVVHIDSSTGIHQPQSLREPRRSGRVTNVPIHYMSLTKTLTVIFNNNIEDPLTF
        V TNA FL+EDHIREHKPRSKIVLNELS ETTEPS          TRVVH+ SST  HQPQSLREPRRSGRVTN+PI YMSLT+TLTVI + +IEDPLTF
Subjt:  VPTNAIFLKEDHIREHKPRSKIVLNELSNETTEPS----------TRVVHIDSSTGIHQPQSLREPRRSGRVTNVPIHYMSLTKTLTVIFNNNIEDPLTF

Query:  KKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKPIGCKWIYKRKKGADGNIQTFKARLVANGYT
        KKAMEDVDKDEWIKAMNL+LESMYFNSVWDLVDQPD +KPIGCKWIYKRK+GADG +QTFKARLVA GYT
Subjt:  KKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKPIGCKWIYKRKKGADGNIQTFKARLVANGYT

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-13185.19Show/hide
Query:  MVRSMMSYAHLPNSFWGYEVQTTVYILNCVPSKSVSETPLKLWNDHKGSLHHFRTWGCLAHVLETNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVF
        MVRSMMSYAHLPNSFWGY VQT VYILNCVPSKSVSETPLKLWN  KGSL HFR WGC AHVLE NPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVF
Subjt:  MVRSMMSYAHLPNSFWGYEVQTTVYILNCVPSKSVSETPLKLWNDHKGSLHHFRTWGCLAHVLETNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVF

Query:  VPTNAIFLKEDHIREHKPRSKIVLNELSNETTEPS----------TRVVHIDSSTGIHQPQSLREPRRSGRVTNVPIHYMSLTKTLTVIFNNNIEDPLTF
        V TNA FL+EDHIREHKPRSKIVLNELS ETTEPS          TRVVH+ SST  HQPQSLREPRRSGRVTN+PI YMSLT+TLTVI + +IEDPLTF
Subjt:  VPTNAIFLKEDHIREHKPRSKIVLNELSNETTEPS----------TRVVHIDSSTGIHQPQSLREPRRSGRVTNVPIHYMSLTKTLTVIFNNNIEDPLTF

Query:  KKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKPIGCKWIYKRKKGADGNIQTFKARLVANGYT
        KKAMEDVDKDEWIKAMNL+LESMYFNSVWDLVDQPD +KPIGCKWIYKRK+GADG +QTFKARLVA GYT
Subjt:  KKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKPIGCKWIYKRKKGADGNIQTFKARLVANGYT

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-13185.19Show/hide
Query:  MVRSMMSYAHLPNSFWGYEVQTTVYILNCVPSKSVSETPLKLWNDHKGSLHHFRTWGCLAHVLETNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVF
        MVRSMMSYAHLPNSFWGY VQT VYILNCVPSKSVSETPLKLWN  KGSL HFR WGC AHVLE NPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVF
Subjt:  MVRSMMSYAHLPNSFWGYEVQTTVYILNCVPSKSVSETPLKLWNDHKGSLHHFRTWGCLAHVLETNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVF

Query:  VPTNAIFLKEDHIREHKPRSKIVLNELSNETTEPS----------TRVVHIDSSTGIHQPQSLREPRRSGRVTNVPIHYMSLTKTLTVIFNNNIEDPLTF
        V TNA FL+EDHIREHKPRSKIVLNELS ETTEPS          TRVVH+ SST  HQPQSLREPRRSGRVTN+PI YMSLT+TLTVI + +IEDPLTF
Subjt:  VPTNAIFLKEDHIREHKPRSKIVLNELSNETTEPS----------TRVVHIDSSTGIHQPQSLREPRRSGRVTNVPIHYMSLTKTLTVIFNNNIEDPLTF

Query:  KKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKPIGCKWIYKRKKGADGNIQTFKARLVANGYT
        KKAMEDVDKDEWIKAMNL+LESMYFNSVWDLVDQPD +KPIGCKWIYKRK+GADG +QTFKARLVA GYT
Subjt:  KKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKPIGCKWIYKRKKGADGNIQTFKARLVANGYT

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein6.5e-13285.19Show/hide
Query:  MVRSMMSYAHLPNSFWGYEVQTTVYILNCVPSKSVSETPLKLWNDHKGSLHHFRTWGCLAHVLETNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVF
        MVRSMMSYAHLPNSFWGY VQT VYILNCVPSKSVSETPLKLWN  KGSL HFR WGC AHVLE NPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVF
Subjt:  MVRSMMSYAHLPNSFWGYEVQTTVYILNCVPSKSVSETPLKLWNDHKGSLHHFRTWGCLAHVLETNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVF

Query:  VPTNAIFLKEDHIREHKPRSKIVLNELSNETTEPS----------TRVVHIDSSTGIHQPQSLREPRRSGRVTNVPIHYMSLTKTLTVIFNNNIEDPLTF
        V TNA FL+EDHIREHKPRSKIVLNELS ETTEPS          TRVVH+ SST  HQPQSLREPRRSGRVTN+PI YMSLT+TLTVI + +IEDPLTF
Subjt:  VPTNAIFLKEDHIREHKPRSKIVLNELSNETTEPS----------TRVVHIDSSTGIHQPQSLREPRRSGRVTNVPIHYMSLTKTLTVIFNNNIEDPLTF

Query:  KKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKPIGCKWIYKRKKGADGNIQTFKARLVANGYT
        KKAMEDVDKDEWIKAMNL+LESMYFNSVWDLVDQPD +KPIGCKWIYKRK+GADG +QTFKARLVA GYT
Subjt:  KKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKPIGCKWIYKRKKGADGNIQTFKARLVANGYT

A0A5A7SNP8 Gag/pol protein1.0e-13285.56Show/hide
Query:  MVRSMMSYAHLPNSFWGYEVQTTVYILNCVPSKSVSETPLKLWNDHKGSLHHFRTWGCLAHVLETNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVF
        MVRSMMSYAHLPNSFWGY VQT VYILNCVPSKSVSETPLKLWN HKGSL HFR WGC AHVLE NPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVF
Subjt:  MVRSMMSYAHLPNSFWGYEVQTTVYILNCVPSKSVSETPLKLWNDHKGSLHHFRTWGCLAHVLETNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVF

Query:  VPTNAIFLKEDHIREHKPRSKIVLNELSNETTEPST----------RVVHIDSSTGIHQPQSLREPRRSGRVTNVPIHYMSLTKTLTVIFNNNIEDPLTF
        V TNA FL+EDHIREHKPRSKIVLNELS ETTEPST          RVVH+ SST  HQPQSLREPRRSGRVTN+PI YMSLT+TLTVI + +IEDPLTF
Subjt:  VPTNAIFLKEDHIREHKPRSKIVLNELSNETTEPST----------RVVHIDSSTGIHQPQSLREPRRSGRVTNVPIHYMSLTKTLTVIFNNNIEDPLTF

Query:  KKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKPIGCKWIYKRKKGADGNIQTFKARLVANGYT
        KKAMEDVDKDEWIKAMNL+LESMYFNSVWDLVDQPD +KPIGCKWIYKRK+GADG +QTFKARLVA GYT
Subjt:  KKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKPIGCKWIYKRKKGADGNIQTFKARLVANGYT

A0A5A7V4M1 Gag/pol protein6.5e-13285.19Show/hide
Query:  MVRSMMSYAHLPNSFWGYEVQTTVYILNCVPSKSVSETPLKLWNDHKGSLHHFRTWGCLAHVLETNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVF
        MVRSMMSYAHLPNSFWGY VQT VYILNCVPSKSVSETPLKLWN  KGSL HFR WGC AHVLE NPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVF
Subjt:  MVRSMMSYAHLPNSFWGYEVQTTVYILNCVPSKSVSETPLKLWNDHKGSLHHFRTWGCLAHVLETNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVF

Query:  VPTNAIFLKEDHIREHKPRSKIVLNELSNETTEPS----------TRVVHIDSSTGIHQPQSLREPRRSGRVTNVPIHYMSLTKTLTVIFNNNIEDPLTF
        V TNA FL+EDHIREHKPRSKIVLNELS ETTEPS          TRVVH+ SST  HQPQSLREPRRSGRVTN+PI YMSLT+TLTVI + +IEDPLTF
Subjt:  VPTNAIFLKEDHIREHKPRSKIVLNELSNETTEPS----------TRVVHIDSSTGIHQPQSLREPRRSGRVTNVPIHYMSLTKTLTVIFNNNIEDPLTF

Query:  KKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKPIGCKWIYKRKKGADGNIQTFKARLVANGYT
        KKAMEDVDKDEWIKAMNL+LESMYFNSVWDLVDQPD +KPIGCKWIYKRK+GADG +QTFKARLVA GYT
Subjt:  KKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKPIGCKWIYKRKKGADGNIQTFKARLVANGYT

A0A5D3CPJ6 Gag/pol protein6.5e-13285.19Show/hide
Query:  MVRSMMSYAHLPNSFWGYEVQTTVYILNCVPSKSVSETPLKLWNDHKGSLHHFRTWGCLAHVLETNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVF
        MVRSMMSYAHLPNSFWGY VQT VYILNCVPSKSVSETPLKLWN  KGSL HFR WGC AHVLE NPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVF
Subjt:  MVRSMMSYAHLPNSFWGYEVQTTVYILNCVPSKSVSETPLKLWNDHKGSLHHFRTWGCLAHVLETNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVF

Query:  VPTNAIFLKEDHIREHKPRSKIVLNELSNETTEPS----------TRVVHIDSSTGIHQPQSLREPRRSGRVTNVPIHYMSLTKTLTVIFNNNIEDPLTF
        V TNA FL+EDHIREHKPRSKIVLNELS ETTEPS          TRVVH+ SST  HQPQSLREPRRSGRVTN+PI YMSLT+TLTVI + +IEDPLTF
Subjt:  VPTNAIFLKEDHIREHKPRSKIVLNELSNETTEPS----------TRVVHIDSSTGIHQPQSLREPRRSGRVTNVPIHYMSLTKTLTVIFNNNIEDPLTF

Query:  KKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKPIGCKWIYKRKKGADGNIQTFKARLVANGYT
        KKAMEDVDKDEWIKAMNL+LESMYFNSVWDLVDQPD +KPIGCKWIYKRK+GADG +QTFKARLVA GYT
Subjt:  KKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKPIGCKWIYKRKKGADGNIQTFKARLVANGYT

A0A5D3DS88 Gag/pol protein6.5e-13285.19Show/hide
Query:  MVRSMMSYAHLPNSFWGYEVQTTVYILNCVPSKSVSETPLKLWNDHKGSLHHFRTWGCLAHVLETNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVF
        MVRSMMSYAHLPNSFWGY VQT VYILNCVPSKSVSETPLKLWN  KGSL HFR WGC AHVLE NPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVF
Subjt:  MVRSMMSYAHLPNSFWGYEVQTTVYILNCVPSKSVSETPLKLWNDHKGSLHHFRTWGCLAHVLETNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVF

Query:  VPTNAIFLKEDHIREHKPRSKIVLNELSNETTEPS----------TRVVHIDSSTGIHQPQSLREPRRSGRVTNVPIHYMSLTKTLTVIFNNNIEDPLTF
        V TNA FL+EDHIREHKPRSKIVLNELS ETTEPS          TRVVH+ SST  HQPQSLREPRRSGRVTN+PI YMSLT+TLTVI + +IEDPLTF
Subjt:  VPTNAIFLKEDHIREHKPRSKIVLNELSNETTEPS----------TRVVHIDSSTGIHQPQSLREPRRSGRVTNVPIHYMSLTKTLTVIFNNNIEDPLTF

Query:  KKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKPIGCKWIYKRKKGADGNIQTFKARLVANGYT
        KKAMEDVDKDEWIKAMNL+LESMYFNSVWDLVDQPD +KPIGCKWIYKRK+GADG +QTFKARLVA GYT
Subjt:  KKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKPIGCKWIYKRKKGADGNIQTFKARLVANGYT

SwissProt top hitse value%identityAlignment
P04146 Copia protein5.1e-1725.07Show/hide
Query:  RSMMSYAHLPNSFWGYEVQTTVYILNCVPSKSV---SETPLKLWNDHKGSLHHFRTWGCLAHV-LETNPKKLEPRSKLCLFVGY-PKG------------
        R+M+S A L  SFWG  V T  Y++N +PS+++   S+TP ++W++ K  L H R +G   +V ++    K + +S   +FVGY P G            
Subjt:  RSMMSYAHLPNSFWGYEVQTTVYILNCVPSKSV---SETPLKLWNDHKGSLHHFRTWGCLAHV-LETNPKKLEPRSKLCLFVGY-PKG------------

Query:  --------------TRGGYFYD--------------PKDNKVFVPT----------NAIFLKEDHIREHK----PRSKIVLNELSNETTE----------
                      +R   F                P D++  + T          N  FLK+    E+K       KI+  E  NE+ E          
Subjt:  --------------TRGGYFYD--------------PKDNKVFVPT----------NAIFLKEDHIREHK----PRSKIVLNELSNETTE----------

Query:  ------------PSTRVVHIDSSTGIHQPQSLREP------------------------RRSGRVTNVP-IHY----MSLTKTLT---VIFNNNIEDPLT
                       R  H++ S G   P   RE                         RRS R+   P I Y     SL K +     IFN   + P +
Subjt:  ------------PSTRVVHIDSSTGIHQPQSLREP------------------------RRSGRVTNVP-IHY----MSLTKTLT---VIFNNNIEDPLT

Query:  FKKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKPIGCKWIYKRKKGADGNIQTFKARLVANGYT
        F +     DK  W +A+N +L +   N+ W +  +P+    +  +W++  K    GN   +KARLVA G+T
Subjt:  FKKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKPIGCKWIYKRKKGADGNIQTFKARLVANGYT

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.4e-2730.72Show/hide
Query:  VRSMMSYAHLPNSFWGYEVQTTVYILNCVPSKSVS-ETPLKLWNDHKGSLHHFRTWGC--LAHVLETNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNK
        VRSM+  A LP SFWG  VQT  Y++N  PS  ++ E P ++W + + S  H + +GC   AHV +    KL+ +S  C+F+GY     G   +DP   K
Subjt:  VRSMMSYAHLPNSFWGYEVQTTVYILNCVPSKSVS-ETPLKLWNDHKGSLHHFRTWGC--LAHVLETNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNK

Query:  VFVPTNAIFLKEDHIREHKPRSKIVLNE-LSNETTEPST--RVVHIDSSTG------------IHQPQSLREP-----------------RRSGRVTNVP
        V    + +F +E  +R     S+ V N  + N  T PST       +S+T             I Q + L E                  RRS R     
Subjt:  VFVPTNAIFLKEDHIREHKPRSKIVLNE-LSNETTEPST--RVVHIDSSTG------------IHQPQSLREP-----------------RRSGRVTNVP

Query:  IHYMSLTKTLTVIFNNNIEDPLTFKKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKPIGCKWIYKRKKGADGNIQTFKARLVANGY
          Y S    L     ++  +P + K+ +   +K++ +KAM  ++ES+  N  + LV+ P   +P+ CKW++K KK  D  +  +KARLV  G+
Subjt:  IHYMSLTKTLTVIFNNNIEDPLTFKKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKPIGCKWIYKRKKGADGNIQTFKARLVANGY

P92520 Uncharacterized mitochondrial protein AtMg008202.2e-0735.96Show/hide
Query:  SLTKTLTVIFNNNIEDPLTFKKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKPIGCKWIYKRKKGADGNIQTFKARLVANGY
        SLT T T+      ++P +   A++D     W +AM  +L+++  N  W LV  P     +GCKW++K K  +DG +   KARLVA G+
Subjt:  SLTKTLTVIFNNNIEDPLTFKKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKPIGCKWIYKRKKGADGNIQTFKARLVANGY

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE18.8e-0937.33Show/hide
Query:  DPLTFKKAMEDVDKDEWIKAMNLKLESMYFNSVWDLV-DQPDEIKPIGCKWIYKRKKGADGNIQTFKARLVANGY
        +P T  +A++D   + W  AM  ++ +   N  WDLV   P  +  +GC+WI+ +K  +DG++  +KARLVA GY
Subjt:  DPLTFKKAMEDVDKDEWIKAMNLKLESMYFNSVWDLV-DQPDEIKPIGCKWIYKRKKGADGNIQTFKARLVANGY

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.8e-0940Show/hide
Query:  DPLTFKKAMEDVDKDEWIKAMNLKLESMYFNSVWDLV-DQPDEIKPIGCKWIYKRKKGADGNIQTFKARLVANGY
        +P T  +AM+D   D W +AM  ++ +   N  WDLV   P  +  +GC+WI+ +K  +DG++  +KARLVA GY
Subjt:  DPLTFKKAMEDVDKDEWIKAMNLKLESMYFNSVWDLV-DQPDEIKPIGCKWIYKRKKGADGNIQTFKARLVANGY

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 83.0e-1242.11Show/hide
Query:  EDPLTFKKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKPIGCKWIYKRKKGADGNIQTFKARLVANGYT
        ++P T+ +A E +    W  AM+ ++ +M     W++   P   KPIGCKW+YK K  +DG I+ +KARLVA GYT
Subjt:  EDPLTFKKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKPIGCKWIYKRKKGADGNIQTFKARLVANGYT

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)1.5e-0835.96Show/hide
Query:  SLTKTLTVIFNNNIEDPLTFKKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKPIGCKWIYKRKKGADGNIQTFKARLVANGY
        SLT T T+      ++P +   A++D     W +AM  +L+++  N  W LV  P     +GCKW++K K  +DG +   KARLVA G+
Subjt:  SLTKTLTVIFNNNIEDPLTFKKAMEDVDKDEWIKAMNLKLESMYFNSVWDLVDQPDEIKPIGCKWIYKRKKGADGNIQTFKARLVANGY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCGATCTATGATGAGTTATGCTCACTTACCTAATTCGTTTTGGGGTTATGAAGTGCAAACTACTGTCTATATTTTGAATTGTGTTCCATCTAAAAGTGTT
TCTGAAACACCTTTGAAATTATGGAATGATCATAAAGGTAGTTTACATCATTTTAGAACCTGGGGTTGTCTAGCACACGTGCTTGAGACTAATCCTAAGAAATTG
GAACCTCGTTCAAAATTATGTTTATTTGTAGGCTACCCCAAAGGAACTAGAGGTGGTTACTTCTATGATCCTAAAGATAATAAAGTGTTTGTACCAACAAATGCT
ATATTTTTAAAAGAGGACCACATAAGGGAGCACAAACCGCGTAGTAAGATAGTATTAAATGAACTTTCCAATGAAACTACTGAACCTTCAACAAGAGTTGTTCAT
ATCGATTCATCTACTGGGATACATCAACCTCAATCGTTGAGGGAACCTCGAAGAAGTGGAAGGGTTACAAACGTACCTATTCATTATATGAGTTTAACTAAAACC
TTAACTGTCATATTTAATAACAACATTGAGGATCCATTGACTTTTAAGAAGGCAATGGAGGATGTGGATAAAGATGAATGGATCAAAGCTATGAATCTTAAATTG
GAGTCTATGTACTTCAATTCAGTCTGGGATCTTGTAGATCAACCTGATGAGATAAAACCTATAGGTTGTAAATGGATCTACAAGAGGAAAAAGGGTGCAGATGGT
AATATACAAACTTTTAAAGCTAGACTAGTGGCAAATGGTTATACCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTCGATCTATGATGAGTTATGCTCACTTACCTAATTCGTTTTGGGGTTATGAAGTGCAAACTACTGTCTATATTTTGAATTGTGTTCCATCTAAAAGTGTT
TCTGAAACACCTTTGAAATTATGGAATGATCATAAAGGTAGTTTACATCATTTTAGAACCTGGGGTTGTCTAGCACACGTGCTTGAGACTAATCCTAAGAAATTG
GAACCTCGTTCAAAATTATGTTTATTTGTAGGCTACCCCAAAGGAACTAGAGGTGGTTACTTCTATGATCCTAAAGATAATAAAGTGTTTGTACCAACAAATGCT
ATATTTTTAAAAGAGGACCACATAAGGGAGCACAAACCGCGTAGTAAGATAGTATTAAATGAACTTTCCAATGAAACTACTGAACCTTCAACAAGAGTTGTTCAT
ATCGATTCATCTACTGGGATACATCAACCTCAATCGTTGAGGGAACCTCGAAGAAGTGGAAGGGTTACAAACGTACCTATTCATTATATGAGTTTAACTAAAACC
TTAACTGTCATATTTAATAACAACATTGAGGATCCATTGACTTTTAAGAAGGCAATGGAGGATGTGGATAAAGATGAATGGATCAAAGCTATGAATCTTAAATTG
GAGTCTATGTACTTCAATTCAGTCTGGGATCTTGTAGATCAACCTGATGAGATAAAACCTATAGGTTGTAAATGGATCTACAAGAGGAAAAAGGGTGCAGATGGT
AATATACAAACTTTTAAAGCTAGACTAGTGGCAAATGGTTATACCTAA
Protein sequenceShow/hide protein sequence
MVRSMMSYAHLPNSFWGYEVQTTVYILNCVPSKSVSETPLKLWNDHKGSLHHFRTWGCLAHVLETNPKKLEPRSKLCLFVGYPKGTRGGYFYDPKDNKVFVPTNA
IFLKEDHIREHKPRSKIVLNELSNETTEPSTRVVHIDSSTGIHQPQSLREPRRSGRVTNVPIHYMSLTKTLTVIFNNNIEDPLTFKKAMEDVDKDEWIKAMNLKL
ESMYFNSVWDLVDQPDEIKPIGCKWIYKRKKGADGNIQTFKARLVANGYT