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Cmc11g0302841 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc11g0302841
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr11:24025257..24027206
RNA-Seq ExpressionCmc11g0302841
SyntenyCmc11g0302841
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033740.1 hypothetical protein E6C27_scaffold239G002160 [Cucumis melo var. makuwa]1.3e-2372.86Show/hide
Query:  VHIMCYNYNKPGHLARNCRNKNRPAMQANPIKEDLVAMITEINVIEGSEGWWLETGSSCHVCHDLRLFKK
        V I+CYN NK GHLARNCRN++RPA QAN I+++LVAMI+E+NVI GSEGWWL+TG+S HVCHDL LF+K
Subjt:  VHIMCYNYNKPGHLARNCRNKNRPAMQANPIKEDLVAMITEINVIEGSEGWWLETGSSCHVCHDLRLFKK

KAA0036465.1 putative Polyprotein [Cucumis melo var. makuwa]2.8e-2370Show/hide
Query:  VHIMCYNYNKPGHLARNCRNKNRPAMQANPIKEDLVAMITEINVIEGSEGWWLETGSSCHVCHDLRLFKK
        V I+CYN NKPGHLARN RN++RP MQAN ++++L+AMI+E+NVIEGSEGWWL+ G+S HVCHDL LF+K
Subjt:  VHIMCYNYNKPGHLARNCRNKNRPAMQANPIKEDLVAMITEINVIEGSEGWWLETGSSCHVCHDLRLFKK

KAA0054951.1 putative Polyprotein [Cucumis melo var. makuwa]2.2e-2371.43Show/hide
Query:  VHIMCYNYNKPGHLARNCRNKNRPAMQANPIKEDLVAMITEINVIEGSEGWWLETGSSCHVCHDLRLFKK
        V I+CYN NKPGHLARNCRN++RPA QAN I+++L+AMI E+NVI GS+GWWL+TG+S HVCHDL LF+K
Subjt:  VHIMCYNYNKPGHLARNCRNKNRPAMQANPIKEDLVAMITEINVIEGSEGWWLETGSSCHVCHDLRLFKK

KAA0058199.1 putative Polyprotein [Cucumis melo var. makuwa]3.7e-2370.42Show/hide
Query:  MVHIMCYNYNKPGHLARNCRNKNRPAMQANPIKEDLVAMITEINVIEGSEGWWLETGSSCHVCHDLRLFKK
        MV I+CYN NKPGHLARNCRN++RP  QAN I+++LVAMI+E+NVI G +GWWL+TG+S HVCHDL LF+K
Subjt:  MVHIMCYNYNKPGHLARNCRNKNRPAMQANPIKEDLVAMITEINVIEGSEGWWLETGSSCHVCHDLRLFKK

TYK28564.1 hypothetical protein E5676_scaffold629G002110 [Cucumis melo var. makuwa]3.7e-2370.42Show/hide
Query:  MVHIMCYNYNKPGHLARNCRNKNRPAMQANPIKEDLVAMITEINVIEGSEGWWLETGSSCHVCHDLRLFKK
        MV I+CYN NKPGHLARNCRN++RP  QAN I+++LVAMI+E+NVI G +GWWL+TG+S HVCHDL LF+K
Subjt:  MVHIMCYNYNKPGHLARNCRNKNRPAMQANPIKEDLVAMITEINVIEGSEGWWLETGSSCHVCHDLRLFKK

TrEMBL top hitse value%identityAlignment
A0A5A7SS30 CCHC-type domain-containing protein6.2e-2472.86Show/hide
Query:  VHIMCYNYNKPGHLARNCRNKNRPAMQANPIKEDLVAMITEINVIEGSEGWWLETGSSCHVCHDLRLFKK
        V I+CYN NK GHLARNCRN++RPA QAN I+++LVAMI+E+NVI GSEGWWL+TG+S HVCHDL LF+K
Subjt:  VHIMCYNYNKPGHLARNCRNKNRPAMQANPIKEDLVAMITEINVIEGSEGWWLETGSSCHVCHDLRLFKK

A0A5A7T4T3 Putative Polyprotein1.4e-2370Show/hide
Query:  VHIMCYNYNKPGHLARNCRNKNRPAMQANPIKEDLVAMITEINVIEGSEGWWLETGSSCHVCHDLRLFKK
        V I+CYN NKPGHLARN RN++RP MQAN ++++L+AMI+E+NVIEGSEGWWL+ G+S HVCHDL LF+K
Subjt:  VHIMCYNYNKPGHLARNCRNKNRPAMQANPIKEDLVAMITEINVIEGSEGWWLETGSSCHVCHDLRLFKK

A0A5A7UN04 Putative Polyprotein1.1e-2371.43Show/hide
Query:  VHIMCYNYNKPGHLARNCRNKNRPAMQANPIKEDLVAMITEINVIEGSEGWWLETGSSCHVCHDLRLFKK
        V I+CYN NKPGHLARNCRN++RPA QAN I+++L+AMI E+NVI GS+GWWL+TG+S HVCHDL LF+K
Subjt:  VHIMCYNYNKPGHLARNCRNKNRPAMQANPIKEDLVAMITEINVIEGSEGWWLETGSSCHVCHDLRLFKK

A0A5A7UXE9 Putative Polyprotein1.8e-2370.42Show/hide
Query:  MVHIMCYNYNKPGHLARNCRNKNRPAMQANPIKEDLVAMITEINVIEGSEGWWLETGSSCHVCHDLRLFKK
        MV I+CYN NKPGHLARNCRN++RP  QAN I+++LVAMI+E+NVI G +GWWL+TG+S HVCHDL LF+K
Subjt:  MVHIMCYNYNKPGHLARNCRNKNRPAMQANPIKEDLVAMITEINVIEGSEGWWLETGSSCHVCHDLRLFKK

A0A5D3DYJ3 CCHC-type domain-containing protein1.8e-2370.42Show/hide
Query:  MVHIMCYNYNKPGHLARNCRNKNRPAMQANPIKEDLVAMITEINVIEGSEGWWLETGSSCHVCHDLRLFKK
        MV I+CYN NKPGHLARNCRN++RP  QAN I+++LVAMI+E+NVI G +GWWL+TG+S HVCHDL LF+K
Subjt:  MVHIMCYNYNKPGHLARNCRNKNRPAMQANPIKEDLVAMITEINVIEGSEGWWLETGSSCHVCHDLRLFKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTACATATTATGTGCTATAATTATAATAAACCTGGACACTTAGCTAGAAATTGTAGAAACAAGAATCGTCCTGCTATGCAGGCAAACCCAATAAAAGAGGAT
TTAGTAGCTATGATCACAGAGATAAATGTGATCGAGGGGTCGGAAGGTTGGTGGCTAGAGACTGGTTCATCATGCCATGTTTGTCATGACCTTAGGCTATTTAAA
AAAATATAA
mRNA sequenceShow/hide mRNA sequence
GCAGTTTAGAAAACATACATGAGCAACCCTACGGTTATTATTGCTAAAAATTTATTTTGAAAATTTTTCAAACTGATTTAATTACGTAGTTAATTTTTGTTGAAT
CGTTTTCAAATGTTGATTTAATTTCGTTGAATCGATGGACATTTCATTTTGACCGTCATAAATATCCGATTGTTGGAGCTTTTCAATCGTCGGATCGTTTCATTT
TGACCGTCATAAATATCCAACCGTTGGACTGTTTTTGACCATCATAATATCAGACCATTTCTTGACCGTCATTAGTTTTCTTACCATTGGTAGCCTCCCTCATCC
ACTATATATACCCACTTCTCTTCTCATTTGACACACCACCGATAATCTCAAGCTCTCTTATTTTCTCTCGAGCTCTCCTTTTTCCCATTTTGTTTCCTTTTAGTT
TTCCGAGAAAACAAGTATCTATCAAGTGTTGGTATACTGATTCGGTTCCAATGGAATTCCTATATGATGAATTAGAGATTGTTTTATCCTATGGATGACGGGGCA
CGTGATGTCTGTTTGTACATCCAAGCAGAGCTGTGAAACGTCTTAAATAGAGCGATATCCATGACTCAACCAATTTATTATAATTAACATGGTTTTTTTTTTCTG
TAGATTTGTTTTACTACGACGCTTTTCTCCATTGAAGTGCTACAAAAATTTAAAGACTTTTCTTTGTCTGTACTGGCCGGTATAATTCAAGGCGACATATGACCT
CAGATCTTAACTGACCATTCTACTTCGGAGGAGCAAATTTCAAGCGCTGGAAATAAAAGATGTTGTTCTTTTTAACCTTGAAAAAGGTTGCCCAACGCTTGCAAT
ACTGAAGAACCAACAATTCCAATCGAAAATCCAACTAAGGAGGAGATCTAAAACCATGCTGCATGGACAGAGTCCGACTTCATATGTAAGAATCTAATTTTGAAT
GGAATTATTGACGAGCTTTATGATTACTACAGTACCATGTCTACCGCGAAAGAAGCTGGGATGCATTGCAAAAAGAAGTACGACACCGAAGAGGTCGAATCCAAG
AAGTGCGTAGTAAGTCAATATTTTCGGTACCAAATGACTAACGATAGATCTGTGGAGGCTCAATCACTCACGAGTTGCATAAAATTGCTTATAAAATAATTAGTA
AAGGTATGCCACTTAACGAGCAGTTTCAAGTTGCTGTTATTATATTGACAAGTTACCTTCACTGTGGAAGGACTTTAAAGATACTCTAAGGTACAAGACAAAGGA
GTTTTTACTGAAGAGTCTAACCACCGACTGAGGGTTGAGGAGGAGACCCATAAGTATGACTAAAAGAAAAAGGTGAACGTTGTCCATAAGCATGATCGAAAGGGA
ACAAAGTGAAGATTTAGAACTGAGGTCCCAACAACCTGAAGAACTCTCAGAAACCCCAGTCTAGAAGTATGGTACATATTATGTGCTATAATTATAATAAACCTG
GACACTTAGCTAGAAATTGTAGAAACAAGAATCGTCCTGCTATGCAGGCAAACCCAATAAAAGAGGATTTAGTAGCTATGATCACAGAGATAAATGTGATCGAGG
GGTCGGAAGGTTGGTGGCTAGAGACTGGTTCATCATGCCATGTTTGTCATGACCTTAGGCTATTTAAAAAAATATAATGAAACTAAGAACAAAAGCATCCTTCTA
AGGATCACCACGCAACCAAAGTAGTTGACATTGGGGAAGTGGAACTAAAGTTCACATCTGGCAAGACACTATTCCTGAATGAAGTCTTGCACACTCTTGAAATTT
GGAAGAACTAGGTCTCGGGCTATCTCCTCAACAAAGCGGGCTTCACTCAAACAATAGGATTGGATCTCTTTACCTTAACTAAAAACAATGTATTTGTAGGGAAGG
TATATGCAACTGATGGCATGTTCAAACTGAACTTAGAAATGAATAAGAACTTGTCTTCTT
Protein sequenceShow/hide protein sequence
MVHIMCYNYNKPGHLARNCRNKNRPAMQANPIKEDLVAMITEINVIEGSEGWWLETGSSCHVCHDLRLFKKI