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Cmc11g0304321 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc11g0304321
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr11:25857144..25857645
RNA-Seq ExpressionCmc11g0304321
SyntenyCmc11g0304321
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036001.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.1e-6477.51Show/hide
Query:  MSFGLTNAPG-FMDLMNKIFHQ--------------------ESHEEHLRIVLQTLHDKQLYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNW
        M FGLTNAP  FMD MN+IFHQ                    ESHEEHLRIVLQTL DKQLYAKFSKCEFWLE+VVFLGH+VSAKGV VDPQKVEA+VNW
Subjt:  MSFGLTNAPG-FMDLMNKIFHQ--------------------ESHEEHLRIVLQTLHDKQLYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNW

Query:  ERPTSATEVRSCLGFKGYYRRFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILALL
        ERPTSATEVRS LG  GYYRRFIEDF+RLALP TA+TRKNAKFEWSDKCEQSFQELKKRLV  PILALL
Subjt:  ERPTSATEVRSCLGFKGYYRRFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILALL

KAA0038417.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]6.8e-6477.38Show/hide
Query:  MSFGLTNAPG-FMDLMNKIFHQ--------------------ESHEEHLRIVLQTLHDKQLYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNW
        M FGLTNAP  FMDLMN+IFHQ                    ESHEEHLRIVLQTL DKQLYAKFSKCEFWLE+VVFLGH+VSAKGVSVDPQKVEA+VNW
Subjt:  MSFGLTNAPG-FMDLMNKIFHQ--------------------ESHEEHLRIVLQTLHDKQLYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNW

Query:  ERPTSATEVRSCLGFKGYYRRFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILAL
        ERPTSATEVRS LG  GYYRRFIEDF++LALP TALTRKNAKFEWSDKC+Q FQELKKRLV  PILAL
Subjt:  ERPTSATEVRSCLGFKGYYRRFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILAL

KAA0050493.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.0e-6376.79Show/hide
Query:  MSFGLTNAPG-FMDLMNKIFH--------------------QESHEEHLRIVLQTLHDKQLYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNW
        M FGLTNAP  FMDLMN+IFH                    +ESHEEHLRIVLQTL +KQLYAKFSKCEFWLE+VVFLGH+VSAKGVSVDPQKVEA+VNW
Subjt:  MSFGLTNAPG-FMDLMNKIFH--------------------QESHEEHLRIVLQTLHDKQLYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNW

Query:  ERPTSATEVRSCLGFKGYYRRFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILAL
        ERP SATEVRS LG  GYYRRFIEDF+RLALP TALTRKN KFEWSDKCEQSFQELKKRLV  PILAL
Subjt:  ERPTSATEVRSCLGFKGYYRRFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILAL

KAA0053222.1 hypothetical protein E6C27_scaffold102G00060 [Cucumis melo var. makuwa]4.3e-6679.76Show/hide
Query:  MSFGLTNAPG-FMDLMNKIFHQ--------------------ESHEEHLRIVLQTLHDKQLYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNW
        MSFGLTNAP  FMDLMN+IFHQ                    ESHEEHLRIVLQTL DKQLYAKFSKCEFWLE+VVFLGH+VSAKGVSVDPQKVEA+VNW
Subjt:  MSFGLTNAPG-FMDLMNKIFHQ--------------------ESHEEHLRIVLQTLHDKQLYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNW

Query:  ERPTSATEVRSCLGFKGYYRRFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILAL
        ERPTSATEVRS LG  GYYRRFIEDF+RLALP TALTRKNAKFEWSDKCEQSFQELKKRLV  PILAL
Subjt:  ERPTSATEVRSCLGFKGYYRRFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILAL

TYJ96975.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.7e-6578.57Show/hide
Query:  MSFGLTNAPG-FMDLMNKIFHQ--------------------ESHEEHLRIVLQTLHDKQLYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNW
        M FGLTNAP  FMDLMN+IFHQ                    ESHEEHLRIVLQTL DKQLYAKFSKCEFWLE+VVFLGH+VSAKGVSVDPQKVEA+VNW
Subjt:  MSFGLTNAPG-FMDLMNKIFHQ--------------------ESHEEHLRIVLQTLHDKQLYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNW

Query:  ERPTSATEVRSCLGFKGYYRRFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILAL
        ERPTSATEVRS LG  GYYRRFIEDF++LALP TALTRKNAKFEWSDKCEQSFQELKKRLV  PILAL
Subjt:  ERPTSATEVRSCLGFKGYYRRFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILAL

TrEMBL top hitse value%identityAlignment
A0A5A7T306 DNA/RNA polymerases superfamily protein5.1e-6577.51Show/hide
Query:  MSFGLTNAPG-FMDLMNKIFHQ--------------------ESHEEHLRIVLQTLHDKQLYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNW
        M FGLTNAP  FMD MN+IFHQ                    ESHEEHLRIVLQTL DKQLYAKFSKCEFWLE+VVFLGH+VSAKGV VDPQKVEA+VNW
Subjt:  MSFGLTNAPG-FMDLMNKIFHQ--------------------ESHEEHLRIVLQTLHDKQLYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNW

Query:  ERPTSATEVRSCLGFKGYYRRFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILALL
        ERPTSATEVRS LG  GYYRRFIEDF+RLALP TA+TRKNAKFEWSDKCEQSFQELKKRLV  PILALL
Subjt:  ERPTSATEVRSCLGFKGYYRRFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILALL

A0A5A7TA17 Putative gag-pol polyprotein3.3e-6477.38Show/hide
Query:  MSFGLTNAPG-FMDLMNKIFHQ--------------------ESHEEHLRIVLQTLHDKQLYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNW
        M FGLTNAP  FMDLMN+IFHQ                    ESHEEHLRIVLQTL DKQLYAKFSKCEFWLE+VVFLGH+VSAKGVSVDPQKVEA+VNW
Subjt:  MSFGLTNAPG-FMDLMNKIFHQ--------------------ESHEEHLRIVLQTLHDKQLYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNW

Query:  ERPTSATEVRSCLGFKGYYRRFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILAL
        ERPTSATEVRS LG  GYYRRFIEDF++LALP TALTRKNAKFEWSDKC+Q FQELKKRLV  PILAL
Subjt:  ERPTSATEVRSCLGFKGYYRRFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILAL

A0A5A7U2V7 Reverse transcriptase9.6e-6476.79Show/hide
Query:  MSFGLTNAPG-FMDLMNKIFH--------------------QESHEEHLRIVLQTLHDKQLYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNW
        M FGLTNAP  FMDLMN+IFH                    +ESHEEHLRIVLQTL +KQLYAKFSKCEFWLE+VVFLGH+VSAKGVSVDPQKVEA+VNW
Subjt:  MSFGLTNAPG-FMDLMNKIFH--------------------QESHEEHLRIVLQTLHDKQLYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNW

Query:  ERPTSATEVRSCLGFKGYYRRFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILAL
        ERP SATEVRS LG  GYYRRFIEDF+RLALP TALTRKN KFEWSDKCEQSFQELKKRLV  PILAL
Subjt:  ERPTSATEVRSCLGFKGYYRRFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILAL

A0A5A7UBV9 Uncharacterized protein2.1e-6679.76Show/hide
Query:  MSFGLTNAPG-FMDLMNKIFHQ--------------------ESHEEHLRIVLQTLHDKQLYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNW
        MSFGLTNAP  FMDLMN+IFHQ                    ESHEEHLRIVLQTL DKQLYAKFSKCEFWLE+VVFLGH+VSAKGVSVDPQKVEA+VNW
Subjt:  MSFGLTNAPG-FMDLMNKIFHQ--------------------ESHEEHLRIVLQTLHDKQLYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNW

Query:  ERPTSATEVRSCLGFKGYYRRFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILAL
        ERPTSATEVRS LG  GYYRRFIEDF+RLALP TALTRKNAKFEWSDKCEQSFQELKKRLV  PILAL
Subjt:  ERPTSATEVRSCLGFKGYYRRFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILAL

A0A5D3BEU1 DNA/RNA polymerases superfamily protein2.3e-6578.57Show/hide
Query:  MSFGLTNAPG-FMDLMNKIFHQ--------------------ESHEEHLRIVLQTLHDKQLYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNW
        M FGLTNAP  FMDLMN+IFHQ                    ESHEEHLRIVLQTL DKQLYAKFSKCEFWLE+VVFLGH+VSAKGVSVDPQKVEA+VNW
Subjt:  MSFGLTNAPG-FMDLMNKIFHQ--------------------ESHEEHLRIVLQTLHDKQLYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNW

Query:  ERPTSATEVRSCLGFKGYYRRFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILAL
        ERPTSATEVRS LG  GYYRRFIEDF++LALP TALTRKNAKFEWSDKCEQSFQELKKRLV  PILAL
Subjt:  ERPTSATEVRSCLGFKGYYRRFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILAL

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.63.1e-1933.53Show/hide
Query:  MSFGLTNAPG-FMDLMNKIFHQ--------------------ESHEEHLRIVLQTLHDKQLYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNW
        M FGL NAP  F   MN I                       + H + L +V + L    L  +  KCEF  +E  FLGH+++  G+  +P+K+EAI  +
Subjt:  MSFGLTNAPG-FMDLMNKIFHQ--------------------ESHEEHLRIVLQTLHDKQLYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNW

Query:  ERPTSATEVRSCLGFKGYYRRFIEDFARLALPFTALTRKNAKFEWSD-KCEQSFQELKKRLVIVPIL
          PT   E+++ LG  GYYR+FI +FA +A P T   +KN K + ++ + + +F++LK  +   PIL
Subjt:  ERPTSATEVRSCLGFKGYYRRFIEDFARLALPFTALTRKNAKFEWSD-KCEQSFQELKKRLVIVPIL

P10394 Retrovirus-related Pol polyprotein from transposon 4123.8e-1736.64Show/hide
Query:  FMDLMNKIFHQESHE-EHLRIVLQTLHDKQLYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCLGFKGYYRRFIEDFARLA
        +MD +  I   E H  ++L  V     +  L     KC F++ EV FLGH  + KG+  D +K + I N+  P  A   R  + F  YYRRFI++FA  +
Subjt:  FMDLMNKIFHQESHE-EHLRIVLQTLHDKQLYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCLGFKGYYRRFIEDFARLA

Query:  LPFTALTRKNAKFEWSDKCEQSFQELKKRLV
           T L +KN  FEW+D+C+++F  LK +L+
Subjt:  LPFTALTRKNAKFEWSDKCEQSFQELKKRLV

P20825 Retrovirus-related Pol polyprotein from transposon 2971.1e-1937.65Show/hide
Query:  MSFGLTNAPG---------FMDLMNK---------IFHQESHEEHL---RIVLQTLHDKQLYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNW
        M FGL NAP             L+NK         I    S  EHL   ++V   L D  L  +  KCEF  +E  FLGHIV+  G+  +P KV+AIV++
Subjt:  MSFGLTNAPG---------FMDLMNK---------IFHQESHEEHL---RIVLQTLHDKQLYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNW

Query:  ERPTSATEVRSCLGFKGYYRRFIEDFARLALPFTALTRKNAKFEWSDKCE--QSFQELKKRLVIVPILAL
          PT   E+R+ LG  GYYR+FI ++A +A P T+  +K  K + + K E  ++F++LK  ++  PIL L
Subjt:  ERPTSATEVRSCLGFKGYYRRFIEDFARLALPFTALTRKNAKFEWSDKCE--QSFQELKKRLVIVPILAL

P92523 Uncharacterized mitochondrial protein AtMg008606.1e-2341.46Show/hide
Query:  HLRIVLQTLHDKQLYAKFSKCEFWLEEVVFLG--HIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCLGFKGYYRRFIEDFARLALPFTALTRKNAKFEW
        HL +VLQ     Q YA   KC F   ++ +LG  HI+S +GVS DP K+EA+V W  P + TE+R  LG  GYYRRF++++ ++  P T L +KN+  +W
Subjt:  HLRIVLQTLHDKQLYAKFSKCEFWLEEVVFLG--HIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCLGFKGYYRRFIEDFARLALPFTALTRKNAKFEW

Query:  SDKCEQSFQELKKRLVIVPILAL
        ++    +F+ LK  +  +P+LAL
Subjt:  SDKCEQSFQELKKRLVIVPILAL

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus5.9e-1835.39Show/hide
Query:  MSFGLTNAPG-FMDLMNKIFHQ--------------------ESHEEHLRIVLQTLHDKQLYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNW
        + FGL NAP  F  +++ I  +                    ++H ++LR+VL +L    L     K  F   +V FLG+IV+A G+  DP+KV AI   
Subjt:  MSFGLTNAPG-FMDLMNKIFHQ--------------------ESHEEHLRIVLQTLHDKQLYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNW

Query:  ERPTSATEVRSCLGFKGYYRRFIEDFARLALPFTALTR---KNAKFEWSDKCE--------QSFQELKKRLVIVPILA
          PTS  E++  LG   YYR+FI+D+A++A P T LTR    N K   S K          QSF +LK  L    ILA
Subjt:  ERPTSATEVRSCLGFKGYYRRFIEDFARLALPFTALTR---KNAKFEWSDKCE--------QSFQELKKRLVIVPILA

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein4.3e-2441.46Show/hide
Query:  HLRIVLQTLHDKQLYAKFSKCEFWLEEVVFLG--HIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCLGFKGYYRRFIEDFARLALPFTALTRKNAKFEW
        HL +VLQ     Q YA   KC F   ++ +LG  HI+S +GVS DP K+EA+V W  P + TE+R  LG  GYYRRF++++ ++  P T L +KN+  +W
Subjt:  HLRIVLQTLHDKQLYAKFSKCEFWLEEVVFLG--HIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCLGFKGYYRRFIEDFARLALPFTALTRKNAKFEW

Query:  SDKCEQSFQELKKRLVIVPILAL
        ++    +F+ LK  +  +P+LAL
Subjt:  SDKCEQSFQELKKRLVIVPILAL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATTCGGTTTAACGAATGCGCCAGGTTTCATGGATCTCATGAACAAGATCTTCCATCAAGAATCCCATGAGGAACATCTGAGGATTGTTCTACAGACTCTA
CATGATAAACAGTTGTACGCTAAGTTCAGCAAATGTGAGTTCTGGTTGGAAGAAGTAGTATTTTTGGGACATATAGTTTCAGCAAAAGGAGTTAGTGTCGATCCA
CAAAAAGTAGAAGCGATTGTCAATTGGGAAAGACCAACTAGTGCGACAGAAGTACGTAGTTGCTTGGGTTTCAAAGGATACTATAGGCGTTTTATTGAGGATTTC
GCTCGATTGGCATTGCCTTTTACCGCTTTGACAAGGAAGAATGCTAAGTTTGAGTGGTCAGATAAATGCGAGCAAAGTTTTCAGGAATTGAAGAAAAGACTAGTC
ATAGTACCTATTTTGGCACTTCTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCATTCGGTTTAACGAATGCGCCAGGTTTCATGGATCTCATGAACAAGATCTTCCATCAAGAATCCCATGAGGAACATCTGAGGATTGTTCTACAGACTCTA
CATGATAAACAGTTGTACGCTAAGTTCAGCAAATGTGAGTTCTGGTTGGAAGAAGTAGTATTTTTGGGACATATAGTTTCAGCAAAAGGAGTTAGTGTCGATCCA
CAAAAAGTAGAAGCGATTGTCAATTGGGAAAGACCAACTAGTGCGACAGAAGTACGTAGTTGCTTGGGTTTCAAAGGATACTATAGGCGTTTTATTGAGGATTTC
GCTCGATTGGCATTGCCTTTTACCGCTTTGACAAGGAAGAATGCTAAGTTTGAGTGGTCAGATAAATGCGAGCAAAGTTTTCAGGAATTGAAGAAAAGACTAGTC
ATAGTACCTATTTTGGCACTTCTGTAA
Protein sequenceShow/hide protein sequence
MSFGLTNAPGFMDLMNKIFHQESHEEHLRIVLQTLHDKQLYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCLGFKGYYRRFIEDF
ARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILALL