; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc11g0307301 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc11g0307301
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationCMiso1.1chr11:28709527..28710378
RNA-Seq ExpressionCmc11g0307301
SyntenyCmc11g0307301
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033392.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]5.0e-164100Show/hide
Query:  MLQKMSSNEKGRDNQQQAKFSQKNGLWHYKDRLVLSKSSSLIPAMLSTYHDSVVGGLSRFLRTYKRLAGELYWPSMKADVKRHSEECIVCQRNKTMALSL
        MLQKMSSNEKGRDNQQQAKFSQKNGLWHYKDRLVLSKSSSLIPAMLSTYHDSVVGGLSRFLRTYKRLAGELYWPSMKADVKRHSEECIVCQRNKTMALSL
Subjt:  MLQKMSSNEKGRDNQQQAKFSQKNGLWHYKDRLVLSKSSSLIPAMLSTYHDSVVGGLSRFLRTYKRLAGELYWPSMKADVKRHSEECIVCQRNKTMALSL

Query:  AGLLTPLEVPLQVWNDISMDFIDALPKAKGFEVVFIVVGLSKYSHFIPLKHPYTAKSVADVFVKEVVRLHGFPASIVSNRDKVFLSNFWKEMFRLAGTKL
        AGLLTPLEVPLQVWNDISMDFIDALPKAKGFEVVFIVVGLSKYSHFIPLKHPYTAKSVADVFVKEVVRLHGFPASIVSNRDKVFLSNFWKEMFRLAGTKL
Subjt:  AGLLTPLEVPLQVWNDISMDFIDALPKAKGFEVVFIVVGLSKYSHFIPLKHPYTAKSVADVFVKEVVRLHGFPASIVSNRDKVFLSNFWKEMFRLAGTKL

Query:  NRSTAYHPQSDGQMEVVNRRLETYLRCFCSERPKEWVSWLPWAEYWYNTTFNRSLGTSPFQVLYGRKPHCYYHMGMAPLLIRL
        NRSTAYHPQSDGQMEVVNRRLETYLRCFCSERPKEWVSWLPWAEYWYNTTFNRSLGTSPFQVLYGRKPHCYYHMGMAPLLIRL
Subjt:  NRSTAYHPQSDGQMEVVNRRLETYLRCFCSERPKEWVSWLPWAEYWYNTTFNRSLGTSPFQVLYGRKPHCYYHMGMAPLLIRL

KAA0061922.1 Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa]6.0e-11775.46Show/hide
Query:  MLQKMSSNEKGRDNQQQAKFSQKNGLWHYKDRLVLSKSSSLIPAMLSTYHDSVVGGLSRFLRTYKRLAGELYWPSMKADVKRHSEECIVCQRNKTMALSL
        +LQK  + E+   N++  KFSQKN +W YK+RLVLSK+S LIP ML T+HDS+VGG S FL+TYKRLA ELYWP MK DV+ + EEC+VCQRNKT+ALS 
Subjt:  MLQKMSSNEKGRDNQQQAKFSQKNGLWHYKDRLVLSKSSSLIPAMLSTYHDSVVGGLSRFLRTYKRLAGELYWPSMKADVKRHSEECIVCQRNKTMALSL

Query:  AGLLTPLEVPLQVWNDISMDFIDALPKAKGFEVVFIVVG-LSKYSHFIPLKHPYTAKSVADVFVKEVVRLHGFPASIVSNRDKVFLSNFWKEMFRLAGTK
        AGLLTPLE P QVW+ ISMDF++ LPKAKGFEVV +VV  LSKY+HFIPLKHPYTAK+VA+VFVKE+VRLHGFP+SIVS+RDK+FLS FWKEMFRLAGT+
Subjt:  AGLLTPLEVPLQVWNDISMDFIDALPKAKGFEVVFIVVG-LSKYSHFIPLKHPYTAKSVADVFVKEVVRLHGFPASIVSNRDKVFLSNFWKEMFRLAGTK

Query:  LNRSTAYHPQSDGQMEVVNRRLETYLRCFCSERPKEWVSWLPWAEYWYNTTFNRSLGTSPFQVLYGRKP
        LN+STAYHPQSDGQ EVVNR LE YLRCFC+E+PKEWV WLPWAEYWYNTT  RSLG SPFQVLYGRKP
Subjt:  LNRSTAYHPQSDGQMEVVNRRLETYLRCFCSERPKEWVSWLPWAEYWYNTTFNRSLGTSPFQVLYGRKP

KAA0064689.1 putative retroelement pol polyprotein [Cucumis melo var. makuwa]1.2e-11271.64Show/hide
Query:  LQKMSSNEKGRDNQQQAKFSQKNGLWHYKDRLVLSKSSSLIPAMLSTYHDSVVGGLSRFLRTYKRLAGELYWPSMKADVKRHSEECIVCQRNKTMALSLA
        L+K+ ++ +  D  Q +KF+ KN L HYK+RLV+SK SSLIPA+L+T+HDSVVGG S FLRT KRLA ELYW  MK+DVK+H E CI CQRNK++ALS  
Subjt:  LQKMSSNEKGRDNQQQAKFSQKNGLWHYKDRLVLSKSSSLIPAMLSTYHDSVVGGLSRFLRTYKRLAGELYWPSMKADVKRHSEECIVCQRNKTMALSLA

Query:  GLLTPLEVPLQVWNDISMDFIDALPKAKGFEVVFIVVG-LSKYSHFIPLKHPYTAKSVADVFVKEVVRLHGFPASIVSNRDKVFLSNFWKEMFRLAGTKL
        GLL PLE+P Q+W+DISMDFID LPKAKG++V+ +VV  LSKYSHF+ LKHPYTAK+VA++FVKE+VRLHGFP SIVSNRDKVFLS+FW E+F++AGTKL
Subjt:  GLLTPLEVPLQVWNDISMDFIDALPKAKGFEVVFIVVG-LSKYSHFIPLKHPYTAKSVADVFVKEVVRLHGFPASIVSNRDKVFLSNFWKEMFRLAGTKL

Query:  NRSTAYHPQSDGQMEVVNRRLETYLRCFCSERPKEWVSWLPWAEYWYNTTFNRSLGTSPFQVLYGRKP
         +STAYHPQ+DGQ EVVNR LETYLRCFCSERPKEW+ WLPWAEYWYNTT+ ++LG SPFQV+YGRKP
Subjt:  NRSTAYHPQSDGQMEVVNRRLETYLRCFCSERPKEWVSWLPWAEYWYNTTFNRSLGTSPFQVLYGRKP

TYJ98385.1 retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa]2.0e-13689.59Show/hide
Query:  MLQKMSSNEKGRDNQQQAKFSQKNGLWHYKDRLVLSKSSSLIPAMLSTYHDSVVGGLSRFLRTYKRLAGELYWPSMKADVKRHSEECIVCQRNKTMALSL
        MLQKM ++EK + NQQQAKF QKNGLWHYKDRLVLSKSSSLIPA+LSTYHDSVVGG S FLRTYKRLA ELYWPSMK DVK++ EECIVCQRNKTMALS 
Subjt:  MLQKMSSNEKGRDNQQQAKFSQKNGLWHYKDRLVLSKSSSLIPAMLSTYHDSVVGGLSRFLRTYKRLAGELYWPSMKADVKRHSEECIVCQRNKTMALSL

Query:  AGLLTPLEVPLQVWNDISMDFIDALPKAKGFEVVFIVVG-LSKYSHFIPLKHPYTAKSVADVFVKEVVRLHGFPASIVSNRDKVFLSNFWKEMFRLAGTK
        AGLLTPLEVPLQVWNDISMDFIDALP+AKGFEVVF+VV  LSKY+HFIPLKHPYTAKSVADVFVKEVVRLHGFPASIVS+RDK+FLSNFWKEMFRLAGTK
Subjt:  AGLLTPLEVPLQVWNDISMDFIDALPKAKGFEVVFIVVG-LSKYSHFIPLKHPYTAKSVADVFVKEVVRLHGFPASIVSNRDKVFLSNFWKEMFRLAGTK

Query:  LNRSTAYHPQSDGQMEVVNRRLETYLRCFCSERPKEWVSWLPWAEYWYNTTFNRSLGTSPFQVLYGRKP
        LNRSTAYHPQSDGQ EVVN  LETYLRCFCSERPKEWVSWL WAEYWYNTT+NRSLGTSPFQVLYGRKP
Subjt:  LNRSTAYHPQSDGQMEVVNRRLETYLRCFCSERPKEWVSWLPWAEYWYNTTFNRSLGTSPFQVLYGRKP

TYK24006.1 Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa]6.0e-11775.46Show/hide
Query:  MLQKMSSNEKGRDNQQQAKFSQKNGLWHYKDRLVLSKSSSLIPAMLSTYHDSVVGGLSRFLRTYKRLAGELYWPSMKADVKRHSEECIVCQRNKTMALSL
        +LQK  + E+   N++  KFSQKN +W YK+RLVLSK+S LIP ML T+HDS+VGG S FL+TYKRLA ELYWP MK DV+ + EEC+VCQRNKT+ALS 
Subjt:  MLQKMSSNEKGRDNQQQAKFSQKNGLWHYKDRLVLSKSSSLIPAMLSTYHDSVVGGLSRFLRTYKRLAGELYWPSMKADVKRHSEECIVCQRNKTMALSL

Query:  AGLLTPLEVPLQVWNDISMDFIDALPKAKGFEVVFIVVG-LSKYSHFIPLKHPYTAKSVADVFVKEVVRLHGFPASIVSNRDKVFLSNFWKEMFRLAGTK
        AGLLTPLE P QVW+ ISMDF++ LPKAKGFEVV +VV  LSKY+HFIPLKHPYTAK+VA+VFVKE+VRLHGFP+SIVS+RDK+FLS FWKEMFRLAGT+
Subjt:  AGLLTPLEVPLQVWNDISMDFIDALPKAKGFEVVFIVVG-LSKYSHFIPLKHPYTAKSVADVFVKEVVRLHGFPASIVSNRDKVFLSNFWKEMFRLAGTK

Query:  LNRSTAYHPQSDGQMEVVNRRLETYLRCFCSERPKEWVSWLPWAEYWYNTTFNRSLGTSPFQVLYGRKP
        LN+STAYHPQSDGQ EVVNR LE YLRCFC+E+PKEWV WLPWAEYWYNTT  RSLG SPFQVLYGRKP
Subjt:  LNRSTAYHPQSDGQMEVVNRRLETYLRCFCSERPKEWVSWLPWAEYWYNTTFNRSLGTSPFQVLYGRKP

TrEMBL top hitse value%identityAlignment
A0A5A7SQD1 Transposon Tf2-1 polyprotein isoform X12.4e-164100Show/hide
Query:  MLQKMSSNEKGRDNQQQAKFSQKNGLWHYKDRLVLSKSSSLIPAMLSTYHDSVVGGLSRFLRTYKRLAGELYWPSMKADVKRHSEECIVCQRNKTMALSL
        MLQKMSSNEKGRDNQQQAKFSQKNGLWHYKDRLVLSKSSSLIPAMLSTYHDSVVGGLSRFLRTYKRLAGELYWPSMKADVKRHSEECIVCQRNKTMALSL
Subjt:  MLQKMSSNEKGRDNQQQAKFSQKNGLWHYKDRLVLSKSSSLIPAMLSTYHDSVVGGLSRFLRTYKRLAGELYWPSMKADVKRHSEECIVCQRNKTMALSL

Query:  AGLLTPLEVPLQVWNDISMDFIDALPKAKGFEVVFIVVGLSKYSHFIPLKHPYTAKSVADVFVKEVVRLHGFPASIVSNRDKVFLSNFWKEMFRLAGTKL
        AGLLTPLEVPLQVWNDISMDFIDALPKAKGFEVVFIVVGLSKYSHFIPLKHPYTAKSVADVFVKEVVRLHGFPASIVSNRDKVFLSNFWKEMFRLAGTKL
Subjt:  AGLLTPLEVPLQVWNDISMDFIDALPKAKGFEVVFIVVGLSKYSHFIPLKHPYTAKSVADVFVKEVVRLHGFPASIVSNRDKVFLSNFWKEMFRLAGTKL

Query:  NRSTAYHPQSDGQMEVVNRRLETYLRCFCSERPKEWVSWLPWAEYWYNTTFNRSLGTSPFQVLYGRKPHCYYHMGMAPLLIRL
        NRSTAYHPQSDGQMEVVNRRLETYLRCFCSERPKEWVSWLPWAEYWYNTTFNRSLGTSPFQVLYGRKPHCYYHMGMAPLLIRL
Subjt:  NRSTAYHPQSDGQMEVVNRRLETYLRCFCSERPKEWVSWLPWAEYWYNTTFNRSLGTSPFQVLYGRKPHCYYHMGMAPLLIRL

A0A5A7V139 Transposon Tf2-9 polyprotein2.9e-11775.46Show/hide
Query:  MLQKMSSNEKGRDNQQQAKFSQKNGLWHYKDRLVLSKSSSLIPAMLSTYHDSVVGGLSRFLRTYKRLAGELYWPSMKADVKRHSEECIVCQRNKTMALSL
        +LQK  + E+   N++  KFSQKN +W YK+RLVLSK+S LIP ML T+HDS+VGG S FL+TYKRLA ELYWP MK DV+ + EEC+VCQRNKT+ALS 
Subjt:  MLQKMSSNEKGRDNQQQAKFSQKNGLWHYKDRLVLSKSSSLIPAMLSTYHDSVVGGLSRFLRTYKRLAGELYWPSMKADVKRHSEECIVCQRNKTMALSL

Query:  AGLLTPLEVPLQVWNDISMDFIDALPKAKGFEVVFIVVG-LSKYSHFIPLKHPYTAKSVADVFVKEVVRLHGFPASIVSNRDKVFLSNFWKEMFRLAGTK
        AGLLTPLE P QVW+ ISMDF++ LPKAKGFEVV +VV  LSKY+HFIPLKHPYTAK+VA+VFVKE+VRLHGFP+SIVS+RDK+FLS FWKEMFRLAGT+
Subjt:  AGLLTPLEVPLQVWNDISMDFIDALPKAKGFEVVFIVVG-LSKYSHFIPLKHPYTAKSVADVFVKEVVRLHGFPASIVSNRDKVFLSNFWKEMFRLAGTK

Query:  LNRSTAYHPQSDGQMEVVNRRLETYLRCFCSERPKEWVSWLPWAEYWYNTTFNRSLGTSPFQVLYGRKP
        LN+STAYHPQSDGQ EVVNR LE YLRCFC+E+PKEWV WLPWAEYWYNTT  RSLG SPFQVLYGRKP
Subjt:  LNRSTAYHPQSDGQMEVVNRRLETYLRCFCSERPKEWVSWLPWAEYWYNTTFNRSLGTSPFQVLYGRKP

A0A5A7VGU4 Putative retroelement pol polyprotein5.6e-11371.64Show/hide
Query:  LQKMSSNEKGRDNQQQAKFSQKNGLWHYKDRLVLSKSSSLIPAMLSTYHDSVVGGLSRFLRTYKRLAGELYWPSMKADVKRHSEECIVCQRNKTMALSLA
        L+K+ ++ +  D  Q +KF+ KN L HYK+RLV+SK SSLIPA+L+T+HDSVVGG S FLRT KRLA ELYW  MK+DVK+H E CI CQRNK++ALS  
Subjt:  LQKMSSNEKGRDNQQQAKFSQKNGLWHYKDRLVLSKSSSLIPAMLSTYHDSVVGGLSRFLRTYKRLAGELYWPSMKADVKRHSEECIVCQRNKTMALSLA

Query:  GLLTPLEVPLQVWNDISMDFIDALPKAKGFEVVFIVVG-LSKYSHFIPLKHPYTAKSVADVFVKEVVRLHGFPASIVSNRDKVFLSNFWKEMFRLAGTKL
        GLL PLE+P Q+W+DISMDFID LPKAKG++V+ +VV  LSKYSHF+ LKHPYTAK+VA++FVKE+VRLHGFP SIVSNRDKVFLS+FW E+F++AGTKL
Subjt:  GLLTPLEVPLQVWNDISMDFIDALPKAKGFEVVFIVVG-LSKYSHFIPLKHPYTAKSVADVFVKEVVRLHGFPASIVSNRDKVFLSNFWKEMFRLAGTKL

Query:  NRSTAYHPQSDGQMEVVNRRLETYLRCFCSERPKEWVSWLPWAEYWYNTTFNRSLGTSPFQVLYGRKP
         +STAYHPQ+DGQ EVVNR LETYLRCFCSERPKEW+ WLPWAEYWYNTT+ ++LG SPFQV+YGRKP
Subjt:  NRSTAYHPQSDGQMEVVNRRLETYLRCFCSERPKEWVSWLPWAEYWYNTTFNRSLGTSPFQVLYGRKP

A0A5D3BJ44 Retrotransposon protein, putative, unclassified9.6e-13789.59Show/hide
Query:  MLQKMSSNEKGRDNQQQAKFSQKNGLWHYKDRLVLSKSSSLIPAMLSTYHDSVVGGLSRFLRTYKRLAGELYWPSMKADVKRHSEECIVCQRNKTMALSL
        MLQKM ++EK + NQQQAKF QKNGLWHYKDRLVLSKSSSLIPA+LSTYHDSVVGG S FLRTYKRLA ELYWPSMK DVK++ EECIVCQRNKTMALS 
Subjt:  MLQKMSSNEKGRDNQQQAKFSQKNGLWHYKDRLVLSKSSSLIPAMLSTYHDSVVGGLSRFLRTYKRLAGELYWPSMKADVKRHSEECIVCQRNKTMALSL

Query:  AGLLTPLEVPLQVWNDISMDFIDALPKAKGFEVVFIVVG-LSKYSHFIPLKHPYTAKSVADVFVKEVVRLHGFPASIVSNRDKVFLSNFWKEMFRLAGTK
        AGLLTPLEVPLQVWNDISMDFIDALP+AKGFEVVF+VV  LSKY+HFIPLKHPYTAKSVADVFVKEVVRLHGFPASIVS+RDK+FLSNFWKEMFRLAGTK
Subjt:  AGLLTPLEVPLQVWNDISMDFIDALPKAKGFEVVFIVVG-LSKYSHFIPLKHPYTAKSVADVFVKEVVRLHGFPASIVSNRDKVFLSNFWKEMFRLAGTK

Query:  LNRSTAYHPQSDGQMEVVNRRLETYLRCFCSERPKEWVSWLPWAEYWYNTTFNRSLGTSPFQVLYGRKP
        LNRSTAYHPQSDGQ EVVN  LETYLRCFCSERPKEWVSWL WAEYWYNTT+NRSLGTSPFQVLYGRKP
Subjt:  LNRSTAYHPQSDGQMEVVNRRLETYLRCFCSERPKEWVSWLPWAEYWYNTTFNRSLGTSPFQVLYGRKP

A0A5D3DK67 Transposon Tf2-9 polyprotein2.9e-11775.46Show/hide
Query:  MLQKMSSNEKGRDNQQQAKFSQKNGLWHYKDRLVLSKSSSLIPAMLSTYHDSVVGGLSRFLRTYKRLAGELYWPSMKADVKRHSEECIVCQRNKTMALSL
        +LQK  + E+   N++  KFSQKN +W YK+RLVLSK+S LIP ML T+HDS+VGG S FL+TYKRLA ELYWP MK DV+ + EEC+VCQRNKT+ALS 
Subjt:  MLQKMSSNEKGRDNQQQAKFSQKNGLWHYKDRLVLSKSSSLIPAMLSTYHDSVVGGLSRFLRTYKRLAGELYWPSMKADVKRHSEECIVCQRNKTMALSL

Query:  AGLLTPLEVPLQVWNDISMDFIDALPKAKGFEVVFIVVG-LSKYSHFIPLKHPYTAKSVADVFVKEVVRLHGFPASIVSNRDKVFLSNFWKEMFRLAGTK
        AGLLTPLE P QVW+ ISMDF++ LPKAKGFEVV +VV  LSKY+HFIPLKHPYTAK+VA+VFVKE+VRLHGFP+SIVS+RDK+FLS FWKEMFRLAGT+
Subjt:  AGLLTPLEVPLQVWNDISMDFIDALPKAKGFEVVFIVVG-LSKYSHFIPLKHPYTAKSVADVFVKEVVRLHGFPASIVSNRDKVFLSNFWKEMFRLAGTK

Query:  LNRSTAYHPQSDGQMEVVNRRLETYLRCFCSERPKEWVSWLPWAEYWYNTTFNRSLGTSPFQVLYGRKP
        LN+STAYHPQSDGQ EVVNR LE YLRCFC+E+PKEWV WLPWAEYWYNTT  RSLG SPFQVLYGRKP
Subjt:  LNRSTAYHPQSDGQMEVVNRRLETYLRCFCSERPKEWVSWLPWAEYWYNTTFNRSLGTSPFQVLYGRKP

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein1.2e-3027.97Show/hide
Query:  DNQQQAKFSQKNGLW-HYKDRLVLSKSSSLIPAMLSTYHDS---VVGGLSRFLRTYKRLAGELYWPSMKADVKRHSEECIVCQRNKTMALSLAGLLTPLE
        D + +     K+GL  + KD+++L   + L   ++  YH+    +  G+        R      W  ++  ++ + + C  CQ NK+      G L P+ 
Subjt:  DNQQQAKFSQKNGLW-HYKDRLVLSKSSSLIPAMLSTYHDS---VVGGLSRFLRTYKRLAGELYWPSMKADVKRHSEECIVCQRNKTMALSLAGLLTPLE

Query:  VPLQVWNDISMDFIDALPKAKGFEVVFIVVG-LSKYSHFIPLKHPYTAKSVADVFVKEVVRLHGFPASIVSNRDKVFLSNFWKEMFRLAGTKLNRSTAYH
           + W  +SMDFI ALP++ G+  +F+VV   SK +  +P     TA+  A +F + V+   G P  I+++ D +F S  WK+        +  S  Y 
Subjt:  VPLQVWNDISMDFIDALPKAKGFEVVFIVVG-LSKYSHFIPLKHPYTAKSVADVFVKEVVRLHGFPASIVSNRDKVFLSNFWKEMFRLAGTKLNRSTAYH

Query:  PQSDGQMEVVNRRLETYLRCFCSERPKEWVSWLPWAEYWYNTTFNRSLGTSPFQVLYGRKP
        PQ+DGQ E  N+ +E  LRC CS  P  WV  +   +  YN   + +   +PF++++   P
Subjt:  PQSDGQMEVVNRRLETYLRCFCSERPKEWVSWLPWAEYWYNTTFNRSLGTSPFQVLYGRKP

P0CT41 Transposon Tf2-12 polyprotein1.2e-3027.97Show/hide
Query:  DNQQQAKFSQKNGLW-HYKDRLVLSKSSSLIPAMLSTYHDS---VVGGLSRFLRTYKRLAGELYWPSMKADVKRHSEECIVCQRNKTMALSLAGLLTPLE
        D + +     K+GL  + KD+++L   + L   ++  YH+    +  G+        R      W  ++  ++ + + C  CQ NK+      G L P+ 
Subjt:  DNQQQAKFSQKNGLW-HYKDRLVLSKSSSLIPAMLSTYHDS---VVGGLSRFLRTYKRLAGELYWPSMKADVKRHSEECIVCQRNKTMALSLAGLLTPLE

Query:  VPLQVWNDISMDFIDALPKAKGFEVVFIVVG-LSKYSHFIPLKHPYTAKSVADVFVKEVVRLHGFPASIVSNRDKVFLSNFWKEMFRLAGTKLNRSTAYH
           + W  +SMDFI ALP++ G+  +F+VV   SK +  +P     TA+  A +F + V+   G P  I+++ D +F S  WK+        +  S  Y 
Subjt:  VPLQVWNDISMDFIDALPKAKGFEVVFIVVG-LSKYSHFIPLKHPYTAKSVADVFVKEVVRLHGFPASIVSNRDKVFLSNFWKEMFRLAGTKLNRSTAYH

Query:  PQSDGQMEVVNRRLETYLRCFCSERPKEWVSWLPWAEYWYNTTFNRSLGTSPFQVLYGRKP
        PQ+DGQ E  N+ +E  LRC CS  P  WV  +   +  YN   + +   +PF++++   P
Subjt:  PQSDGQMEVVNRRLETYLRCFCSERPKEWVSWLPWAEYWYNTTFNRSLGTSPFQVLYGRKP

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein1.1e-3332.22Show/hide
Query:  QKMSSNEKGRDNQQQAKFSQKNGLWHYKDRLVLSKSSSLIPAMLSTYHD-SVVGGLSRFLRTYKRLAGELYWPSMKADVKRHSEECIVCQRNKTMALSLA
        +K+  +E  R N     +S ++ + +Y+DRLV+        A++  YHD ++ GG      T  +++   YWP ++  + ++   C+ CQ  K+    L 
Subjt:  QKMSSNEKGRDNQQQAKFSQKNGLWHYKDRLVLSKSSSLIPAMLSTYHD-SVVGGLSRFLRTYKRLAGELYWPSMKADVKRHSEECIVCQRNKTMALSLA

Query:  GLLTPLEVPLQVWNDISMDFIDAL-PKAKGFEVVFIVVG-LSKYSHFIPLKHPYTAKSVADVFVKEVVRLHGFPASIVSNRDKVFLSNFWKEMFRLAGTK
        GLL PL +    W DISMDF+  L P +    ++ +VV   SK +HFI  +    A  + D+  + +   HGFP +I S+RD    ++ ++E+ +  G K
Subjt:  GLLTPLEVPLQVWNDISMDFIDAL-PKAKGFEVVFIVVG-LSKYSHFIPLKHPYTAKSVADVFVKEVVRLHGFPASIVSNRDKVFLSNFWKEMFRLAGTK

Query:  LNRSTAYHPQSDGQMEVVNRRLETYLRCFCSERPKEWVSWLPWAEYWYNTTFNRSLGTSPFQVLYGRKPH
           S+A HPQ+DGQ E   + L   LR + S   + W  +LP  E+ YN+T  R+LG SPF++  G  P+
Subjt:  LNRSTAYHPQSDGQMEVVNRRLETYLRCFCSERPKEWVSWLPWAEYWYNTTFNRSLGTSPFQVLYGRKPH

Q99315 Transposon Ty3-G Gag-Pol polyprotein8.6e-3432.22Show/hide
Query:  QKMSSNEKGRDNQQQAKFSQKNGLWHYKDRLVLSKSSSLIPAMLSTYHD-SVVGGLSRFLRTYKRLAGELYWPSMKADVKRHSEECIVCQRNKTMALSLA
        +K+  +E  R N     +S ++ + +Y+DRLV+        A++  YHD ++ GG      T  +++   YWP ++  + ++   C+ CQ  K+    L 
Subjt:  QKMSSNEKGRDNQQQAKFSQKNGLWHYKDRLVLSKSSSLIPAMLSTYHD-SVVGGLSRFLRTYKRLAGELYWPSMKADVKRHSEECIVCQRNKTMALSLA

Query:  GLLTPLEVPLQVWNDISMDFIDAL-PKAKGFEVVFIVVG-LSKYSHFIPLKHPYTAKSVADVFVKEVVRLHGFPASIVSNRDKVFLSNFWKEMFRLAGTK
        GLL PL +    W DISMDF+  L P +    ++ +VV   SK +HFI  +    A  + D+  + +   HGFP +I S+RD    ++ ++E+ +  G K
Subjt:  GLLTPLEVPLQVWNDISMDFIDAL-PKAKGFEVVFIVVG-LSKYSHFIPLKHPYTAKSVADVFVKEVVRLHGFPASIVSNRDKVFLSNFWKEMFRLAGTK

Query:  LNRSTAYHPQSDGQMEVVNRRLETYLRCFCSERPKEWVSWLPWAEYWYNTTFNRSLGTSPFQVLYGRKPH
           S+A HPQ+DGQ E   + L   LR + S   + W  +LP  E+ YN+T  R+LG SPF++  G  P+
Subjt:  LNRSTAYHPQSDGQMEVVNRRLETYLRCFCSERPKEWVSWLPWAEYWYNTTFNRSLGTSPFQVLYGRKPH

Q9UR07 Transposon Tf2-11 polyprotein1.2e-3027.97Show/hide
Query:  DNQQQAKFSQKNGLW-HYKDRLVLSKSSSLIPAMLSTYHDS---VVGGLSRFLRTYKRLAGELYWPSMKADVKRHSEECIVCQRNKTMALSLAGLLTPLE
        D + +     K+GL  + KD+++L   + L   ++  YH+    +  G+        R      W  ++  ++ + + C  CQ NK+      G L P+ 
Subjt:  DNQQQAKFSQKNGLW-HYKDRLVLSKSSSLIPAMLSTYHDS---VVGGLSRFLRTYKRLAGELYWPSMKADVKRHSEECIVCQRNKTMALSLAGLLTPLE

Query:  VPLQVWNDISMDFIDALPKAKGFEVVFIVVG-LSKYSHFIPLKHPYTAKSVADVFVKEVVRLHGFPASIVSNRDKVFLSNFWKEMFRLAGTKLNRSTAYH
           + W  +SMDFI ALP++ G+  +F+VV   SK +  +P     TA+  A +F + V+   G P  I+++ D +F S  WK+        +  S  Y 
Subjt:  VPLQVWNDISMDFIDALPKAKGFEVVFIVVG-LSKYSHFIPLKHPYTAKSVADVFVKEVVRLHGFPASIVSNRDKVFLSNFWKEMFRLAGTKLNRSTAYH

Query:  PQSDGQMEVVNRRLETYLRCFCSERPKEWVSWLPWAEYWYNTTFNRSLGTSPFQVLYGRKP
        PQ+DGQ E  N+ +E  LRC CS  P  WV  +   +  YN   + +   +PF++++   P
Subjt:  PQSDGQMEVVNRRLETYLRCFCSERPKEWVSWLPWAEYWYNTTFNRSLGTSPFQVLYGRKP

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTACAGAAGATGTCCTCTAATGAAAAGGGGAGAGACAACCAGCAACAAGCTAAGTTTTCGCAAAAGAATGGCTTGTGGCATTATAAAGATCGATTAGTTTTATCCAA
ATCTTCATCATTAATTCCGGCCATGTTATCCACCTATCATGACTCAGTAGTGGGAGGTCTCTCAAGATTCTTGCGCACATACAAAAGACTAGCAGGCGAATTATATTGGC
CGAGTATGAAGGCAGATGTCAAGAGACATTCTGAGGAATGTATAGTTTGTCAGCGGAATAAAACCATGGCTTTATCCCTGGCTGGATTATTAACCCCTTTAGAAGTTCCA
CTGCAAGTGTGGAATGACATTTCGATGGATTTTATTGATGCGTTACCAAAGGCGAAAGGGTTTGAAGTAGTGTTCATAGTAGTTGGGCTGAGTAAGTACAGCCATTTTAT
ACCACTTAAACATCCTTACACAGCCAAATCAGTAGCAGATGTGTTTGTAAAAGAAGTAGTCCGACTACATGGCTTTCCCGCATCCATTGTGTCTAATCGTGACAAGGTTT
TCCTTAGTAACTTTTGGAAGGAAATGTTCCGTTTAGCCGGCACAAAGTTGAATAGGAGCACAGCGTACCACCCACAATCTGATGGTCAAATGGAAGTAGTTAACCGACGG
CTGGAAACTTATCTCCGTTGTTTCTGTAGTGAGCGACCAAAAGAGTGGGTGTCATGGTTACCATGGGCAGAATATTGGTATAACACCACTTTTAATCGATCACTCGGCAC
TTCGCCTTTCCAGGTGCTATATGGCAGAAAACCCCATTGTTATTATCATATGGGGATGGCACCACTACTAATTCGGCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTACAGAAGATGTCCTCTAATGAAAAGGGGAGAGACAACCAGCAACAAGCTAAGTTTTCGCAAAAGAATGGCTTGTGGCATTATAAAGATCGATTAGTTTTATCCAA
ATCTTCATCATTAATTCCGGCCATGTTATCCACCTATCATGACTCAGTAGTGGGAGGTCTCTCAAGATTCTTGCGCACATACAAAAGACTAGCAGGCGAATTATATTGGC
CGAGTATGAAGGCAGATGTCAAGAGACATTCTGAGGAATGTATAGTTTGTCAGCGGAATAAAACCATGGCTTTATCCCTGGCTGGATTATTAACCCCTTTAGAAGTTCCA
CTGCAAGTGTGGAATGACATTTCGATGGATTTTATTGATGCGTTACCAAAGGCGAAAGGGTTTGAAGTAGTGTTCATAGTAGTTGGGCTGAGTAAGTACAGCCATTTTAT
ACCACTTAAACATCCTTACACAGCCAAATCAGTAGCAGATGTGTTTGTAAAAGAAGTAGTCCGACTACATGGCTTTCCCGCATCCATTGTGTCTAATCGTGACAAGGTTT
TCCTTAGTAACTTTTGGAAGGAAATGTTCCGTTTAGCCGGCACAAAGTTGAATAGGAGCACAGCGTACCACCCACAATCTGATGGTCAAATGGAAGTAGTTAACCGACGG
CTGGAAACTTATCTCCGTTGTTTCTGTAGTGAGCGACCAAAAGAGTGGGTGTCATGGTTACCATGGGCAGAATATTGGTATAACACCACTTTTAATCGATCACTCGGCAC
TTCGCCTTTCCAGGTGCTATATGGCAGAAAACCCCATTGTTATTATCATATGGGGATGGCACCACTACTAATTCGGCTTTAG
Protein sequenceShow/hide protein sequence
MLQKMSSNEKGRDNQQQAKFSQKNGLWHYKDRLVLSKSSSLIPAMLSTYHDSVVGGLSRFLRTYKRLAGELYWPSMKADVKRHSEECIVCQRNKTMALSLAGLLTPLEVP
LQVWNDISMDFIDALPKAKGFEVVFIVVGLSKYSHFIPLKHPYTAKSVADVFVKEVVRLHGFPASIVSNRDKVFLSNFWKEMFRLAGTKLNRSTAYHPQSDGQMEVVNRR
LETYLRCFCSERPKEWVSWLPWAEYWYNTTFNRSLGTSPFQVLYGRKPHCYYHMGMAPLLIRL