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Cmc11g0307901 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc11g0307901
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationCMiso1.1chr11:29112908..29113717
RNA-Seq ExpressionCmc11g0307901
SyntenyCmc11g0307901
Gene Ontology termsNA
InterPro domainsIPR012337 - Ribonuclease H-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045362.1 putative mitochondrial protein [Cucumis melo var. makuwa]2.0e-6986.79Show/hide
Query:  TIFPYANSTTFSPPQSLSISNPSILLTLLNILQYTPLNSVPIPNIQSPPIHPLTVDITCSSFMDTNGTCQSLNVSSTIDTGNEINATATNLPDPPPPQNT
        TIFPYANST  SP QSLSISNPSILLTLLNI Q+TPLNS+ IPNIQS PI P TVDITCSSFMDTN TCQSLNVSST+DTGNEINAT  NLPDPPPP+NT
Subjt:  TIFPYANSTTFSPPQSLSISNPSILLTLLNILQYTPLNSVPIPNIQSPPIHPLTVDITCSSFMDTNGTCQSLNVSSTIDTGNEINATATNLPDPPPPQNT

Query:  HAMQTQAKSGIFKPKAFHITTALPTSTSYTEASKYPKWQIAMHEEFNALQAQGTWSLVP
        HAMQT+AKS IFKPKAFHITTALPT TSYTEASKYP+W+ AMHEEFNALQAQGTWSLVP
Subjt:  HAMQTQAKSGIFKPKAFHITTALPTSTSYTEASKYPKWQIAMHEEFNALQAQGTWSLVP

KAA0056830.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.9e-4069.5Show/hide
Query:  PPQSLSISNPSILLTLLNILQYTPLNSVPIPNIQSPPIHPLTVDITCSSFM-DTNGTCQSLNVSSTIDTGNEINATATNLPDPPPPQNTHAMQTQAKSGI
        P QS+S S+ SILLTLLNI  +TP     I NIQSPP +P  VDIT SSF+ +TN T QSLNVSST++  N+INA  TN+  PPPP+NTH MQT+ KSGI
Subjt:  PPQSLSISNPSILLTLLNILQYTPLNSVPIPNIQSPPIHPLTVDITCSSFM-DTNGTCQSLNVSSTIDTGNEINATATNLPDPPPPQNTHAMQTQAKSGI

Query:  FKPKAFHITTALPTSTSYTEASKYPKWQIAMHEEFNALQAQ
        FKPKAFHITTALPT TSYTEASKYPKW  AM EEF+ALQAQ
Subjt:  FKPKAFHITTALPTSTSYTEASKYPKWQIAMHEEFNALQAQ

KAA0066360.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.9e-4086.6Show/hide
Query:  MDTNGTCQSLNVSSTIDTGNEINATATNLPDPPPPQNTHAMQTQAKSGIFKPKAFHITTALPTSTSYTEASKYPKWQIAMHEEFNALQAQGTWSLVP
        MDTN TCQSLN+SS +DTGNEINAT  NLPDPPP +NTHAMQT+AKSGIFKPKAFHITTALPT TSYTEASKYP+W+ AMHEEFNALQAQGTWSLVP
Subjt:  MDTNGTCQSLNVSSTIDTGNEINATATNLPDPPPPQNTHAMQTQAKSGIFKPKAFHITTALPTSTSYTEASKYPKWQIAMHEEFNALQAQGTWSLVP

PKU66571.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatum]1.7e-4142.49Show/hide
Query:  SLISHSSVPLEFWPHAFSTAVFLINRMSSSSLKMLSPFEMLFGYTLDLHCLKVFLCACYPILKPYTKHKLEPKTTQHVFLDYPHSFKGYICYNPLTKQTI
        +L+  +++P  FW  A STA +LINR+ + +  +  P++ ++G   D   L+ F C CYP L+P T +KL+P++   VFL Y  S KGY CYN  T++  
Subjt:  SLISHSSVPLEFWPHAFSTAVFLINRMSSSSLKMLSPFEMLFGYTLDLHCLKVFLCACYPILKPYTKHKLEPKTTQHVFLDYPHSFKGYICYNPLTKQTI

Query:  VSRHVIFHETIFPYANSTTFSPPQSLSISNPSILLTLLNILQYTPLNSVPIPNIQSPPIHP-LTVDITCSSFMDTNGTCQSLNVSSTIDTGNEINATATN
        +SRHVIFHET FPY N    SPP  +S S P I          +PL  +P   ++  PI+P L+   + SSF     T  SLN S TI T    + T + 
Subjt:  VSRHVIFHETIFPYANSTTFSPPQSLSISNPSILLTLLNILQYTPLNSVPIPNIQSPPIHP-LTVDITCSSFMDTNGTCQSLNVSSTIDTGNEINATATN

Query:  LPDPPPPQNTHAMQTQAKSGIFKPKAFH----ITTALPTSTSYTEASKYPKWQIAMHEEFNALQAQGTWSLVP
         P PPPPQ  H M+T+ K+G  KPK       +TT+  T TSYT+A+K+P+W+ AM +EF ALQ Q TWSL P
Subjt:  LPDPPPPQNTHAMQTQAKSGIFKPKAFH----ITTALPTSTSYTEASKYPKWQIAMHEEFNALQAQGTWSLVP

TYJ96936.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.2e-4290.72Show/hide
Query:  MDTNGTCQSLNVSSTIDTGNEINATATNLPDPPPPQNTHAMQTQAKSGIFKPKAFHITTALPTSTSYTEASKYPKWQIAMHEEFNALQAQGTWSLVP
        MDTN TCQSLNVSST+DTGNEINAT  NLPDPPPP+NTHAMQT+AKSGIFKPKAFHITTALPT TSYTEASKYP+WQ AMHEEFNALQAQGTWSLVP
Subjt:  MDTNGTCQSLNVSSTIDTGNEINATATNLPDPPPPQNTHAMQTQAKSGIFKPKAFHITTALPTSTSYTEASKYPKWQIAMHEEFNALQAQGTWSLVP

TrEMBL top hitse value%identityAlignment
A0A2N9FMC6 Integrase catalytic domain-containing protein6.3e-4543.06Show/hide
Query:  MSLISHSSVPLEFWPHAFSTAVFLINRMSSSSLKMLSPFEMLFGYTLDLHCLKVFLCACYPILKPYTKHKLEPKTTQHVFLDYPHSFKGYICYNPLTKQT
        ++LIS SS+PL++WP+AFSTA++LINRM + +LK  SP+++LF    D   LK F C C+P+L+PY KHKLEP+++  VFL Y  + KGY+C N  T + 
Subjt:  MSLISHSSVPLEFWPHAFSTAVFLINRMSSSSLKMLSPFEMLFGYTLDLHCLKVFLCACYPILKPYTKHKLEPKTTQHVFLDYPHSFKGYICYNPLTKQT

Query:  IVSRHVIFHETIFPYANSTTFSPPQSLSISNPSILLTLLNILQYTPLNSVPIPNIQSPP--IHPLTVDITCSSFMDTNGTCQSLNVSSTIDTGNEINAT-
        ++SRHV FHE  FP+ + T+ S     S S PS    L ++L + P  +   P+I  PP  + PL+     SS +  + + Q+   S  + T +  + + 
Subjt:  IVSRHVIFHETIFPYANSTTFSPPQSLSISNPSILLTLLNILQYTPLNSVPIPNIQSPP--IHPLTVDITCSSFMDTNGTCQSLNVSSTIDTGNEINAT-

Query:  ---ATNLPDPP--PPQNTHAMQTQAKSGIFKPK-AFHITTALPTST---SYTEASKYPKWQIAMHEEFNALQAQGTWSLVP
           + ++P  P  PP N+H MQT+ KSGI K K   H  T  P  T   SY  ASKYP+WQ AM +E+ ALQ Q TWSLVP
Subjt:  ---ATNLPDPP--PPQNTHAMQTQAKSGIFKPK-AFHITTALPTST---SYTEASKYPKWQIAMHEEFNALQAQGTWSLVP

A0A2N9GDM9 Integrase catalytic domain-containing protein2.1e-4540.4Show/hide
Query:  MSLISHSSVPLEFWPHAFSTAVFLINRMSSSSLKMLSPFEMLFGYTLDLHCLKVFLCACYPILKPYTKHKLEPKTTQHVFLDYPHSFKGYICYNPLTKQT
        ++++S S +P+ +W HA STA  LINR+ + +L   +P+E+LF    DL  L+ F C C+P+L PYT HKL PKTT  VF+ YP   KGY+C +P+TK+ 
Subjt:  MSLISHSSVPLEFWPHAFSTAVFLINRMSSSSLKMLSPFEMLFGYTLDLHCLKVFLCACYPILKPYTKHKLEPKTTQHVFLDYPHSFKGYICYNPLTKQT

Query:  IVSRHVIFHETIFP-YANSTTFSPPQSLSISNPSILLTLL---NILQYTP---------------LNSVPIPNIQSPPIHPLTVDITCSSFMDTNGTCQS
         VSRHV+F+ETIFP   +ST      +  I +P+  +T +   +   +TP                 S+P+P   SP   P +   + SS  +++ +  S
Subjt:  IVSRHVIFHETIFP-YANSTTFSPPQSLSISNPSILLTLL---NILQYTP---------------LNSVPIPNIQSPPIHPLTVDITCSSFMDTNGTCQS

Query:  -LNVSSTIDTGNEINATATNLPD-----PPPPQNTHAMQTQAKSGIFKPK---AFHITTALPTSTSYTEASKYPKWQIAMHEEFNALQAQGTWSLVP
           + +T  T    + T T LP      P  P NTH MQT++K+GIFKPK   A H    L   T+Y  ASK+P+W  AM EEF ALQ QGTW+LVP
Subjt:  -LNVSSTIDTGNEINATATNLPD-----PPPPQNTHAMQTQAKSGIFKPK---AFHITTALPTSTSYTEASKYPKWQIAMHEEFNALQAQGTWSLVP

A0A2N9GRJ0 Uncharacterized protein6.3e-4543.06Show/hide
Query:  MSLISHSSVPLEFWPHAFSTAVFLINRMSSSSLKMLSPFEMLFGYTLDLHCLKVFLCACYPILKPYTKHKLEPKTTQHVFLDYPHSFKGYICYNPLTKQT
        ++LIS SS+PL++WP+AFSTA++LINRM + +LK  SP+++LF    D   LK F C C+P+L+PY KHKLEP+++  VFL Y  + KGY+C N  T + 
Subjt:  MSLISHSSVPLEFWPHAFSTAVFLINRMSSSSLKMLSPFEMLFGYTLDLHCLKVFLCACYPILKPYTKHKLEPKTTQHVFLDYPHSFKGYICYNPLTKQT

Query:  IVSRHVIFHETIFPYANSTTFSPPQSLSISNPSILLTLLNILQYTPLNSVPIPNIQSPP--IHPLTVDITCSSFMDTNGTCQSLNVSSTIDTGNEINAT-
        ++SRHV FHE  FP+ + T+ S     S S PS    L ++L + P  +   P+I  PP  + PL+     SS +  + + Q+   S  + T +  + + 
Subjt:  IVSRHVIFHETIFPYANSTTFSPPQSLSISNPSILLTLLNILQYTPLNSVPIPNIQSPP--IHPLTVDITCSSFMDTNGTCQSLNVSSTIDTGNEINAT-

Query:  ---ATNLPDPP--PPQNTHAMQTQAKSGIFKPK-AFHITTALPTST---SYTEASKYPKWQIAMHEEFNALQAQGTWSLVP
           + ++P  P  PP N+H MQT+ KSGI K K   H  T  P  T   SY  ASKYP+WQ AM +E+ ALQ Q TWSLVP
Subjt:  ---ATNLPDPP--PPQNTHAMQTQAKSGIFKPK-AFHITTALPTST---SYTEASKYPKWQIAMHEEFNALQAQGTWSLVP

A0A2N9ISJ0 Integrase catalytic domain-containing protein8.2e-4543.27Show/hide
Query:  MSLISHSSVPLEFWPHAFSTAVFLINRMSSSSLKMLSPFEMLFGYTLDLHCLKVFLCACYPILKPYTKHKLEPKTTQHVFLDYPHSFKGYICYNPLTKQT
        ++L+SH+S+P+  W HA +TA+ LINR+ +  L   SP+EMLF    DL  LK F C C+P L+PY  HKL+P+TT  +FL YP   KGYIC +P T +T
Subjt:  MSLISHSSVPLEFWPHAFSTAVFLINRMSSSSLKMLSPFEMLFGYTLDLHCLKVFLCACYPILKPYTKHKLEPKTTQHVFLDYPHSFKGYICYNPLTKQT

Query:  IVSRHVIFHETIFPYANSTTFSPPQSLS--ISNPSILLTLLNILQYTPLNSVPIPNIQSPPIHPLTVDITCSSFMDTNGTCQSLNVSSTIDTGNEINATA
         +SRHV+F+E+ F  ++S   + P S S   S   ++  L +I   T  +S     + SP  H         S  + N    SL + STI         +
Subjt:  IVSRHVIFHETIFPYANSTTFSPPQSLS--ISNPSILLTLLNILQYTPLNSVPIPNIQSPPIHPLTVDITCSSFMDTNGTCQSLNVSSTIDTGNEINATA

Query:  TNLP-DPPPPQNTHAMQTQAKSGIFKPKAFHITTALPTST---SYTEASKYPKWQIAMHEEFNALQAQGTWSLVP
         +LP  P  P NTH M T++K GIFKPK+FH TT   T T   +Y  ASK+P+W  AM EEF+ALQ Q TWSLVP
Subjt:  TNLP-DPPPPQNTHAMQTQAKSGIFKPKAFHITTALPTST---SYTEASKYPKWQIAMHEEFNALQAQGTWSLVP

A0A5A7TPR4 Putative mitochondrial protein9.6e-7086.79Show/hide
Query:  TIFPYANSTTFSPPQSLSISNPSILLTLLNILQYTPLNSVPIPNIQSPPIHPLTVDITCSSFMDTNGTCQSLNVSSTIDTGNEINATATNLPDPPPPQNT
        TIFPYANST  SP QSLSISNPSILLTLLNI Q+TPLNS+ IPNIQS PI P TVDITCSSFMDTN TCQSLNVSST+DTGNEINAT  NLPDPPPP+NT
Subjt:  TIFPYANSTTFSPPQSLSISNPSILLTLLNILQYTPLNSVPIPNIQSPPIHPLTVDITCSSFMDTNGTCQSLNVSSTIDTGNEINATATNLPDPPPPQNT

Query:  HAMQTQAKSGIFKPKAFHITTALPTSTSYTEASKYPKWQIAMHEEFNALQAQGTWSLVP
        HAMQT+AKS IFKPKAFHITTALPT TSYTEASKYP+W+ AMHEEFNALQAQGTWSLVP
Subjt:  HAMQTQAKSGIFKPKAFHITTALPTSTSYTEASKYPKWQIAMHEEFNALQAQGTWSLVP

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.7e-0730.91Show/hide
Query:  SLISHSSVPLEFWPHAFSTAVFLINRMSSSSLKMLSPFEMLFGYTLDLHCLKVFLCACYPILKPYTKHKLEPKTTQHVFLDYPHSFKGYICYNPLTKQTI
        S++  + +P  FW  A  TA +LINR  S  L    P  +     +    LKVF C  +  +    + KL+ K+   +F+ Y     GY  ++P+ K+ I
Subjt:  SLISHSSVPLEFWPHAFSTAVFLINRMSSSSLKMLSPFEMLFGYTLDLHCLKVFLCACYPILKPYTKHKLEPKTTQHVFLDYPHSFKGYICYNPLTKQTI

Query:  VSRHVIFHET
         SR V+F E+
Subjt:  VSRHVIFHET

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE16.3e-2633.33Show/hide
Query:  MSLISHSSVPLEFWPHAFSTAVFLINRMSSSSLKMLSPFEMLFGYTLDLHCLKVFLCACYPILKPYTKHKLEPKTTQHVFLDYPHSFKGYICYNPLTKQT
        ++L+SH+S+P  +WP+AF+ AV+LINR+ +  L++ SPF+ LFG + +   L+VF CACYP L+PY +HKL+ K+ Q VFL Y  +   Y+C +  T + 
Subjt:  MSLISHSSVPLEFWPHAFSTAVFLINRMSSSSLKMLSPFEMLFGYTLDLHCLKVFLCACYPILKPYTKHKLEPKTTQHVFLDYPHSFKGYICYNPLTKQT

Query:  IVSRHVIFHETIFPYAN-STTFSPPQSLSISNPSILLTLLNILQYTPLNSVPIPNIQSPPIHPLTVDITCSS-FMDTNGTCQSL--NVSSTIDTGNEINA
         +SRHV F E  FP++N   T SP Q     +  +      +   TP+  +P P+  S P H  T   + S+ F ++  +  +L  + SS+  +  E  A
Subjt:  IVSRHVIFHETIFPYAN-STTFSPPQSLSISNPSILLTLLNILQYTPLNSVPIPNIQSPPIHPLTVDITCSS-FMDTNGTCQSL--NVSSTIDTGNEINA

Query:  TATNLPDP--PPPQ---NTHAMQTQAKSGIFKPKAFHITTALPTSTSYTEASKYP
           N P P   P Q    TH+ Q  +++         +  +L T    + +S  P
Subjt:  TATNLPDP--PPPQ---NTHAMQTQAKSGIFKPKAFHITTALPTSTSYTEASKYP

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.5e-2434.4Show/hide
Query:  MSLISHSSVPLEFWPHAFSTAVFLINRMSSSSLKMLSPFEMLFGYTLDLHCLKVFLCACYPILKPYTKHKLEPKTTQHVFLDYPHSFKGYICYNPLTKQT
        ++L+SH+SVP  +WP+AFS AV+LINR+ +  L++ SPF+ LFG   +   LKVF CACYP L+PY +HKLE K+ Q  F+ Y  +   Y+C +  T + 
Subjt:  MSLISHSSVPLEFWPHAFSTAVFLINRMSSSSLKMLSPFEMLFGYTLDLHCLKVFLCACYPILKPYTKHKLEPKTTQHVFLDYPHSFKGYICYNPLTKQT

Query:  IVSRHVIFHETIFPYANS----TTFSPPQSLSISNPSILLTLLNILQYTPLNSVPIPNIQSPPIHPLTVDITCSSFMDTNGTCQSLNVSSTIDTGNEINA
          SRHV F E  FP++ +    +T    +S S  N     TL       P      P++ + P  P +    C++ + ++        SS+I + +    
Subjt:  IVSRHVIFHETIFPYANS----TTFSPPQSLSISNPSILLTLLNILQYTPLNSVPIPNIQSPPIHPLTVDITCSSFMDTNGTCQSLNVSSTIDTGNEINA

Query:  TATNLPDPPPPQNTHAMQ
        TA +   P P    H  Q
Subjt:  TATNLPDPPPPQNTHAMQ

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCTAATTTCCCATTCTTCTGTTCCTCTTGAATTTTGGCCTCACGCCTTCTCCACTGCAGTCTTTCTTATTAATCGAATGTCTTCTTCATCACTTAAAATGTTATC
ACCATTTGAAATGCTTTTTGGTTATACTCTTGATTTGCATTGTTTAAAAGTTTTTTTATGTGCATGTTACCCCATTCTCAAGCCTTACACCAAACACAAACTTGAACCAA
AAACCACCCAACATGTATTTTTAGACTATCCTCATAGCTTCAAAGGCTATATTTGTTACAATCCATTAACCAAACAAACCATAGTTTCACGACATGTTATCTTTCATGAA
ACAATCTTTCCCTATGCAAATTCCACCACATTTTCTCCACCTCAATCCTTATCCATCTCTAATCCAAGCATACTACTCACCTTACTAAACATTCTACAATATACACCCTT
AAATTCTGTTCCCATTCCCAATATCCAATCCCCACCTATTCACCCTCTCACTGTTGACATTACTTGCTCATCTTTTATGGATACTAATGGCACTTGTCAGTCTTTGAATG
TTTCATCTACAATCGATACAGGAAATGAGATAAATGCTACTGCAACTAACTTACCTGATCCACCTCCTCCTCAAAATACTCATGCTATGCAAACTCAAGCAAAATCAGGT
ATTTTTAAGCCAAAGGCCTTTCACATTACAACTGCTCTCCCAACTTCCACATCATACACAGAAGCCTCCAAATATCCAAAATGGCAAATTGCGATGCATGAGGAATTCAA
TGCTCTTCAAGCACAAGGTACCTGGTCTTTAGTACCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTCTAATTTCCCATTCTTCTGTTCCTCTTGAATTTTGGCCTCACGCCTTCTCCACTGCAGTCTTTCTTATTAATCGAATGTCTTCTTCATCACTTAAAATGTTATC
ACCATTTGAAATGCTTTTTGGTTATACTCTTGATTTGCATTGTTTAAAAGTTTTTTTATGTGCATGTTACCCCATTCTCAAGCCTTACACCAAACACAAACTTGAACCAA
AAACCACCCAACATGTATTTTTAGACTATCCTCATAGCTTCAAAGGCTATATTTGTTACAATCCATTAACCAAACAAACCATAGTTTCACGACATGTTATCTTTCATGAA
ACAATCTTTCCCTATGCAAATTCCACCACATTTTCTCCACCTCAATCCTTATCCATCTCTAATCCAAGCATACTACTCACCTTACTAAACATTCTACAATATACACCCTT
AAATTCTGTTCCCATTCCCAATATCCAATCCCCACCTATTCACCCTCTCACTGTTGACATTACTTGCTCATCTTTTATGGATACTAATGGCACTTGTCAGTCTTTGAATG
TTTCATCTACAATCGATACAGGAAATGAGATAAATGCTACTGCAACTAACTTACCTGATCCACCTCCTCCTCAAAATACTCATGCTATGCAAACTCAAGCAAAATCAGGT
ATTTTTAAGCCAAAGGCCTTTCACATTACAACTGCTCTCCCAACTTCCACATCATACACAGAAGCCTCCAAATATCCAAAATGGCAAATTGCGATGCATGAGGAATTCAA
TGCTCTTCAAGCACAAGGTACCTGGTCTTTAGTACCCTGA
Protein sequenceShow/hide protein sequence
MSLISHSSVPLEFWPHAFSTAVFLINRMSSSSLKMLSPFEMLFGYTLDLHCLKVFLCACYPILKPYTKHKLEPKTTQHVFLDYPHSFKGYICYNPLTKQTIVSRHVIFHE
TIFPYANSTTFSPPQSLSISNPSILLTLLNILQYTPLNSVPIPNIQSPPIHPLTVDITCSSFMDTNGTCQSLNVSSTIDTGNEINATATNLPDPPPPQNTHAMQTQAKSG
IFKPKAFHITTALPTSTSYTEASKYPKWQIAMHEEFNALQAQGTWSLVP