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Cmc11g0309921 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc11g0309921
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationCMiso1.1chr11:30448240..30450081
RNA-Seq ExpressionCmc11g0309921
SyntenyCmc11g0309921
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575236.1 hypothetical protein SDJN03_25875, partial [Cucurbita argyrosperma subsp. sororia]3.4e-4745.97Show/hide
Query:  MFTFELPQIHDFLKAISVLTETFDDSFDLKFSPAIFSIMAAASPSSRCVIALQLSPQIFTTYVCAKLYYKFIFFETFCDTMQECERTGFSSLTFSFQEID
        MF F L Q H+  +A+ V+    D ++ LKFS    SIM +ASP + C+IA+QL P  F TY C  L+Y +I        M +  R GFSSL+FSF   +
Subjt:  MFTFELPQIHDFLKAISVLTETFDDSFDLKFSPAIFSIMAAASPSSRCVIALQLSPQIFTTYVCAKLYYKFIFFETFCDTMQECERTGFSSLTFSFQEID

Query:  HDAKLASIPGCDKKVDVPLLPSTEEMDVGEFDFGIFVSIESQEFINIIKRLSDFDYVLVTLSISQVKFSYGRKAIILTQEEKQCIIGGINEASDRILFVI
            +   P   ++ D  L PS    D+G +D+  FV++ES+EFINII     + YVLVTL+ SQVKFSY R   I+T+E  +CIIGGI E S  I ++I
Subjt:  HDAKLASIPGCDKKVDVPLLPSTEEMDVGEFDFGIFVSIESQEFINIIKRLSDFDYVLVTLSISQVKFSYGRKAIILTQEEKQCIIGGINEASDRILFVI

Query:  TLQPTEFFCNVVGRSKRVWLFKSINNYSKGVISAPLGLYAKYLIYFFD
        T+ P   FCN+V +++RVWLFKS +  +KGVISAPLGL+A+++ YF D
Subjt:  TLQPTEFFCNVVGRSKRVWLFKSINNYSKGVISAPLGLYAKYLIYFFD

XP_008458680.1 PREDICTED: uncharacterized protein LOC103498008 [Cucumis melo]1.1e-5070.12Show/hide
Query:  MFTFELPQIHDFLKAISVLTETFDDSFDLKFSPAIFSIMAAASPSSRCVIALQLSPQIFTTYVCAKLYYKFIFFETFCDTMQECERTGFSSLTFSFQEID
        M  FELPQIH FL+AISVLTET +D FDLKFSPAIFSIM AASPSSRC+I+LQLSPQIF TYVC  L++KF+FF  FCDTMQEC+ TGFSSL FSFQE D
Subjt:  MFTFELPQIHDFLKAISVLTETFDDSFDLKFSPAIFSIMAAASPSSRCVIALQLSPQIFTTYVCAKLYYKFIFFETFCDTMQECERTGFSSLTFSFQEID

Query:  ------HDAKLA---SIPGCDKKVDVPLLPSTEEMDVGEFDFGIFVSIESQEFINIIKRLSDFD
               DA L    S  GC     V L PS+E++DVGEFDFG FVSIESQEFINIIKR  DFD
Subjt:  ------HDAKLA---SIPGCDKKVDVPLLPSTEEMDVGEFDFGIFVSIESQEFINIIKRLSDFD

XP_022958855.1 uncharacterized protein LOC111460009 [Cucurbita moschata]1.3e-6753.11Show/hide
Query:  IHDFLKAISVLTETFDDSFDLKFSPAIFSIMAAASPSSRCVIALQLSPQIFTTYVCAKLYYKFIFFETFCDTMQECERTGFSSLTFSFQEIDH-DAKLA-
        +HD + A SVL ET+DD FD+KFSP +FSIMAA +PSS C+I LQLSPQ F  Y+C +L+YKFI+ E F D M   ER GFSSLTF+F E D  D+ +A 
Subjt:  IHDFLKAISVLTETFDDSFDLKFSPAIFSIMAAASPSSRCVIALQLSPQIFTTYVCAKLYYKFIFFETFCDTMQECERTGFSSLTFSFQEIDH-DAKLA-

Query:  -------------SIP-----------------GCDKKVDVPLLPSTEEMDVGEFDFGIFVSIESQEFINIIKRLSDFDYVLVTLSISQVKFSYGRKAII
                     +IP                 G  ++V++P+ PS + MDVG FD G FVSI+SQEFINI+   +DFDYVLVTL  SQV FSYG+  I+
Subjt:  -------------SIP-----------------GCDKKVDVPLLPSTEEMDVGEFDFGIFVSIESQEFINIIKRLSDFDYVLVTLSISQVKFSYGRKAII

Query:  LTQEEKQCIIGGINEASDRILFVITLQPTEFFCNVVGRSKRVWLFKSINNYSKGVISAPLGLYAKYLIYFFDR
        LT+E +QCIIGG+  ASD ++FVI+LQP   FCN+  R +RVWLFKS ++ ++GVI+APLGLYA+Y+ YF DR
Subjt:  LTQEEKQCIIGGINEASDRILFVITLQPTEFFCNVVGRSKRVWLFKSINNYSKGVISAPLGLYAKYLIYFFDR

XP_023006011.1 uncharacterized protein LOC111498888 [Cucurbita maxima]4.9e-7054.91Show/hide
Query:  IHDFLKAISVLTETFDDSFDLKFSPAIFSIMAAASPSSRCVIALQLSPQIFTTYVCAKLYYKFIFFETFCDTMQECERTGFSSLTFSFQEIDH-DAKLA-
        +HD + A SVL ET+DD FD+KFSP +FSIMAA +PSSRC+IALQLSPQ F  Y+C +L+YKFI+ E+F D M   ER GFSSLTF+F E D  D+ +A 
Subjt:  IHDFLKAISVLTETFDDSFDLKFSPAIFSIMAAASPSSRCVIALQLSPQIFTTYVCAKLYYKFIFFETFCDTMQECERTGFSSLTFSFQEIDH-DAKLA-

Query:  -------------SIP-----------------GCDKKVDVPLLPSTEEMDVGEFDFGIFVSIESQEFINIIKRLSDFDYVLVTLSISQVKFSYGRKAII
                     +IP                 G  ++V++P+ PS++ MDVG FDFG FVSI+SQEFINI+   +DFDYVLVTL+ SQV FSYG+  II
Subjt:  -------------SIP-----------------GCDKKVDVPLLPSTEEMDVGEFDFGIFVSIESQEFINIIKRLSDFDYVLVTLSISQVKFSYGRKAII

Query:  LTQEEKQCIIGGINEASDRILFVITLQPTEFFCNVVGRSKRVWLFKSINNYSKGVISAPLGLYAKYLIYFFDRRE
        LTQE +QCIIGG+  AS  ++FVI+LQP   FCN+  R +RVWLFKS ++ ++GVI+APLGLYA+YL YF DR E
Subjt:  LTQEEKQCIIGGINEASDRILFVITLQPTEFFCNVVGRSKRVWLFKSINNYSKGVISAPLGLYAKYLIYFFDRRE

XP_023548336.1 uncharacterized protein LOC111807004 [Cucurbita pepo subsp. pepo]3.4e-7154.58Show/hide
Query:  IHDFLKAISVLTETFDDSFDLKFSPAIFSIMAAASPSSRCVIALQLSPQIFTTYVCAKLYYKFIFFETFCDTMQECERTGFSSLTFSFQEIDH-DAKLA-
        +HD + A SVL ETFDD FD+KFSP +FSIMAA +PSSRC+IALQLSPQ F  Y+C +L+YKFI+ E F D M   ER GFSSLTF+F E D  D+ +A 
Subjt:  IHDFLKAISVLTETFDDSFDLKFSPAIFSIMAAASPSSRCVIALQLSPQIFTTYVCAKLYYKFIFFETFCDTMQECERTGFSSLTFSFQEIDH-DAKLA-

Query:  -------------SIP-----------------GCDKKVDVPLLPSTEEMDVGEFDFGIFVSIESQEFINIIKRLSDFDYVLVTLSISQVKFSYGRKAII
                     +IP                 G  ++V++P+ PS++ MDVG FDFG FVSI+SQEFINI+   +DFDYVLVTL  SQV FSYG+  I+
Subjt:  -------------SIP-----------------GCDKKVDVPLLPSTEEMDVGEFDFGIFVSIESQEFINIIKRLSDFDYVLVTLSISQVKFSYGRKAII

Query:  LTQEEKQCIIGGINEASDRILFVITLQPTEFFCNVVGRSKRVWLFKSINNYSKGVISAPLGLYAKYLIYFFDR
        LTQE +QCIIGG+  ASD ++FVI+LQP   FCN+  R +RVWLFKS ++ ++GV++APLGLYA+Y+ YF DR
Subjt:  LTQEEKQCIIGGINEASDRILFVITLQPTEFFCNVVGRSKRVWLFKSINNYSKGVISAPLGLYAKYLIYFFDR

TrEMBL top hitse value%identityAlignment
A0A1S3C9N3 uncharacterized protein LOC1034980085.4e-5170.12Show/hide
Query:  MFTFELPQIHDFLKAISVLTETFDDSFDLKFSPAIFSIMAAASPSSRCVIALQLSPQIFTTYVCAKLYYKFIFFETFCDTMQECERTGFSSLTFSFQEID
        M  FELPQIH FL+AISVLTET +D FDLKFSPAIFSIM AASPSSRC+I+LQLSPQIF TYVC  L++KF+FF  FCDTMQEC+ TGFSSL FSFQE D
Subjt:  MFTFELPQIHDFLKAISVLTETFDDSFDLKFSPAIFSIMAAASPSSRCVIALQLSPQIFTTYVCAKLYYKFIFFETFCDTMQECERTGFSSLTFSFQEID

Query:  ------HDAKLA---SIPGCDKKVDVPLLPSTEEMDVGEFDFGIFVSIESQEFINIIKRLSDFD
               DA L    S  GC     V L PS+E++DVGEFDFG FVSIESQEFINIIKR  DFD
Subjt:  ------HDAKLA---SIPGCDKKVDVPLLPSTEEMDVGEFDFGIFVSIESQEFINIIKRLSDFD

A0A6J1H4N0 uncharacterized protein LOC1114600096.4e-6853.11Show/hide
Query:  IHDFLKAISVLTETFDDSFDLKFSPAIFSIMAAASPSSRCVIALQLSPQIFTTYVCAKLYYKFIFFETFCDTMQECERTGFSSLTFSFQEIDH-DAKLA-
        +HD + A SVL ET+DD FD+KFSP +FSIMAA +PSS C+I LQLSPQ F  Y+C +L+YKFI+ E F D M   ER GFSSLTF+F E D  D+ +A 
Subjt:  IHDFLKAISVLTETFDDSFDLKFSPAIFSIMAAASPSSRCVIALQLSPQIFTTYVCAKLYYKFIFFETFCDTMQECERTGFSSLTFSFQEIDH-DAKLA-

Query:  -------------SIP-----------------GCDKKVDVPLLPSTEEMDVGEFDFGIFVSIESQEFINIIKRLSDFDYVLVTLSISQVKFSYGRKAII
                     +IP                 G  ++V++P+ PS + MDVG FD G FVSI+SQEFINI+   +DFDYVLVTL  SQV FSYG+  I+
Subjt:  -------------SIP-----------------GCDKKVDVPLLPSTEEMDVGEFDFGIFVSIESQEFINIIKRLSDFDYVLVTLSISQVKFSYGRKAII

Query:  LTQEEKQCIIGGINEASDRILFVITLQPTEFFCNVVGRSKRVWLFKSINNYSKGVISAPLGLYAKYLIYFFDR
        LT+E +QCIIGG+  ASD ++FVI+LQP   FCN+  R +RVWLFKS ++ ++GVI+APLGLYA+Y+ YF DR
Subjt:  LTQEEKQCIIGGINEASDRILFVITLQPTEFFCNVVGRSKRVWLFKSINNYSKGVISAPLGLYAKYLIYFFDR

A0A6J1H678 uncharacterized protein LOC1114603982.7e-4247.17Show/hide
Query:  SIMAAASPSSRCVIALQLSPQIFTTYVCAKLYYKFIFFETFCDTMQECERTGFSSLTFSFQEIDHDAKLASIPGCDKKVDVPLLPSTEEMDVGEFDFGIF
        SIM +ASP + C+IA+QL P  F TY C  L+Y +I        M +  R GFSSL+FSF   +    +   P   ++ D  L PS    D+G +D+  F
Subjt:  SIMAAASPSSRCVIALQLSPQIFTTYVCAKLYYKFIFFETFCDTMQECERTGFSSLTFSFQEIDHDAKLASIPGCDKKVDVPLLPSTEEMDVGEFDFGIF

Query:  VSIESQEFINIIKRLSDFDYVLVTLSISQVKFSYGRKAIILTQEEKQCIIGGINEASDRILFVITLQPTEFFCNVVGRSKRVWLFKSINNYSKGVISAPL
        V++ES+EFINII     + YVLVTL+ SQVKFSY R   I+T+E  +C+IGGI E S  I ++IT+ P   FCN+V +++RVWLFKS +  +KGVISAPL
Subjt:  VSIESQEFINIIKRLSDFDYVLVTLSISQVKFSYGRKAIILTQEEKQCIIGGINEASDRILFVITLQPTEFFCNVVGRSKRVWLFKSINNYSKGVISAPL

Query:  GLYAKYLIYFFD
        GL+A+++ YF D
Subjt:  GLYAKYLIYFFD

A0A6J1KWL1 uncharacterized protein LOC1114988882.4e-7054.91Show/hide
Query:  IHDFLKAISVLTETFDDSFDLKFSPAIFSIMAAASPSSRCVIALQLSPQIFTTYVCAKLYYKFIFFETFCDTMQECERTGFSSLTFSFQEIDH-DAKLA-
        +HD + A SVL ET+DD FD+KFSP +FSIMAA +PSSRC+IALQLSPQ F  Y+C +L+YKFI+ E+F D M   ER GFSSLTF+F E D  D+ +A 
Subjt:  IHDFLKAISVLTETFDDSFDLKFSPAIFSIMAAASPSSRCVIALQLSPQIFTTYVCAKLYYKFIFFETFCDTMQECERTGFSSLTFSFQEIDH-DAKLA-

Query:  -------------SIP-----------------GCDKKVDVPLLPSTEEMDVGEFDFGIFVSIESQEFINIIKRLSDFDYVLVTLSISQVKFSYGRKAII
                     +IP                 G  ++V++P+ PS++ MDVG FDFG FVSI+SQEFINI+   +DFDYVLVTL+ SQV FSYG+  II
Subjt:  -------------SIP-----------------GCDKKVDVPLLPSTEEMDVGEFDFGIFVSIESQEFINIIKRLSDFDYVLVTLSISQVKFSYGRKAII

Query:  LTQEEKQCIIGGINEASDRILFVITLQPTEFFCNVVGRSKRVWLFKSINNYSKGVISAPLGLYAKYLIYFFDRRE
        LTQE +QCIIGG+  AS  ++FVI+LQP   FCN+  R +RVWLFKS ++ ++GVI+APLGLYA+YL YF DR E
Subjt:  LTQEEKQCIIGGINEASDRILFVITLQPTEFFCNVVGRSKRVWLFKSINNYSKGVISAPLGLYAKYLIYFFDRRE

A0A6J1L2R2 uncharacterized protein LOC1114993081.6e-4242.29Show/hide
Query:  MFTFELPQIHDFLKAISVLTETFDDSFDLKFSPAIFSIMAAASPSSRCVIALQLSPQIFTTYVCAKLYYKFIFFETFCDTMQECERTGFSSLTFSFQEID
        +F F L Q+ D + A SV+    DD  D+KFS  +F+IMA + P+   VIAL L PQ F  YVC +L   + F +     M + E +GF+SL+F+    +
Subjt:  MFTFELPQIHDFLKAISVLTETFDDSFDLKFSPAIFSIMAAASPSSRCVIALQLSPQIFTTYVCAKLYYKFIFFETFCDTMQECERTGFSSLTFSFQEID

Query:  H-DAKLASIPGCDKKVDVPLLPSTEEMDVGEFDFGIFVSIESQEFINIIKRLSDFDYVLVTLSISQVKFSYG-RKAIILTQEEKQCIIGGINEASDRILF
          + K  +  G   +V+  L+PS + ++VG+FDF  FVS++S+EF+NI+     FDYV VT++ ++V FSY      ILTQE+ +C+IGGI  A + + F
Subjt:  H-DAKLASIPGCDKKVDVPLLPSTEEMDVGEFDFGIFVSIESQEFINIIKRLSDFDYVLVTLSISQVKFSYG-RKAIILTQEEKQCIIGGINEASDRILF

Query:  VITLQPTEFFCNVVGRSKRVWLFKSINNYSKGVISAPLGLYAKYLIYFFDRRE
        +ITL P E F ++  RSKRVWL+KS+   +KGVI  PLGLY +++ YF++  E
Subjt:  VITLQPTEFFCNVVGRSKRVWLFKSINNYSKGVISAPLGLYAKYLIYFFDRRE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCACTTTTGAGCTTCCCCAAATCCATGACTTCCTCAAAGCCATCTCCGTCCTCACCGAGACATTCGACGATTCGTTTGATCTCAAATTCTCACCGGCAATA
TTCTCGATAATGGCCGCTGCGTCACCCTCCTCTCGTTGCGTTATTGCCCTACAATTATCCCCTCAAATCTTTACCACATATGTCTGCGCAAAACTTTACTACAAA
TTCATTTTCTTCGAAACCTTTTGTGATACCATGCAAGAATGCGAACGTACAGGCTTTTCTTCATTGACTTTCAGTTTTCAAGAAATAGATCACGACGCCAAGCTT
GCATCTATACCTGGTTGTGATAAGAAAGTTGATGTCCCATTGTTGCCTTCTACTGAAGAGATGGATGTTGGTGAATTTGATTTTGGAATTTTTGTGTCAATTGAA
TCACAAGAATTCATAAATATTATCAAACGGCTTAGTGATTTTGATTATGTTCTTGTTACCCTATCAATTTCACAAGTCAAATTCTCTTATGGAAGGAAAGCGATT
ATTCTAACTCAAGAGGAAAAGCAATGCATTATTGGAGGAATCAACGAAGCAAGTGATCGAATTCTCTTTGTAATTACTCTCCAACCAACGGAATTCTTTTGCAAT
GTTGTTGGTCGTTCTAAAAGAGTATGGTTATTCAAATCAATTAATAATTACTCCAAAGGTGTAATTTCTGCCCCTTTAGGATTGTATGCTAAATATTTGATCTAT
TTTTTTGATAGGAGAGAGTGA
mRNA sequenceShow/hide mRNA sequence
AGTAGCATAATTGACCTAACAAATAATACTTGCTTAAATAGTAAAATGTTTTATTAAGTAAACCACAGATCACTCAACATTTGGAGCGTAAAATTCATTTCTCCC
ATTTCCGATGTTCACTTTTGAGCTTCCCCAAATCCATGACTTCCTCAAAGCCATCTCCGTCCTCACCGAGACATTCGACGATTCGTTTGATCTCAAATTCTCACC
GGCAATATTCTCGATAATGGCCGCTGCGTCACCCTCCTCTCGTTGCGTTATTGCCCTACAATTATCCCCTCAAATCTTTACCACATATGTCTGCGCAAAACTTTA
CTACAAATTCATTTTCTTCGAAACCTTTTGTGATACCATGCAAGAATGCGAACGTACAGGCTTTTCTTCATTGACTTTCAGTTTTCAAGAAATAGATCACGACGC
CAAGCTTGCATCTATACCTGGTTGTGATAAGAAAGTTGATGTCCCATTGTTGCCTTCTACTGAAGAGATGGATGTTGGTGAATTTGATTTTGGAATTTTTGTGTC
AATTGAATCACAAGAATTCATAAATATTATCAAACGGCTTAGTGATTTTGATTATGTTCTTGTTACCCTATCAATTTCACAAGTCAAATTCTCTTATGGAAGGAA
AGCGATTATTCTAACTCAAGAGGAAAAGCAATGCATTATTGGAGGAATCAACGAAGCAAGTGATCGAATTCTCTTTGTAATTACTCTCCAACCAACGGAATTCTT
TTGCAATGTTGTTGGTCGTTCTAAAAGAGTATGGTTATTCAAATCAATTAATAATTACTCCAAAGGTGTAATTTCTGCCCCTTTAGGATTGTATGCTAAATATTT
GATCTATTTTTTTGATAGGAGAGAGTGACATTTTATGAGATATTGTTCTATAGTGATCTACAAAAATATACGTT
Protein sequenceShow/hide protein sequence
MFTFELPQIHDFLKAISVLTETFDDSFDLKFSPAIFSIMAAASPSSRCVIALQLSPQIFTTYVCAKLYYKFIFFETFCDTMQECERTGFSSLTFSFQEIDHDAKL
ASIPGCDKKVDVPLLPSTEEMDVGEFDFGIFVSIESQEFINIIKRLSDFDYVLVTLSISQVKFSYGRKAIILTQEEKQCIIGGINEASDRILFVITLQPTEFFCN
VVGRSKRVWLFKSINNYSKGVISAPLGLYAKYLIYFFDRRE