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Cmc11g0309941 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc11g0309941
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationCMiso1.1chr11:30455568..30457946
RNA-Seq ExpressionCmc11g0309941
SyntenyCmc11g0309941
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575236.1 hypothetical protein SDJN03_25875, partial [Cucurbita argyrosperma subsp. sororia]4.1e-2548.7Show/hide
Query:  SIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLTFCSRDGHLREIDFPMYHSDGSMDACYDQLD
        SIM + +P  +C IA+QL PP+F Q Y+C  LHYSWI I+  FP M D+ R GFSSL+FSF     A+L F      LRE DF +  S+GS D      D
Subjt:  SIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLTFCSRDGHLREIDFPMYHSDGSMDACYDQLD

Query:  WETFVSFSSQEFINIVT-LNNFDSVLVTLTNSQVKFSYAGTQMILTQEEDGALL
        + TFV+  S+EFINI+T    +  VLVTLT+SQVKFSY   Q I+T+E    ++
Subjt:  WETFVSFSSQEFINIVT-LNNFDSVLVTLTNSQVKFSYAGTQMILTQEEDGALL

KGN45638.2 hypothetical protein Csa_005465, partial [Cucumis sativus]4.8e-3494.81Show/hide
Query:  MFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLTFCSRD
        MFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYIN FFPEMF +ERTGFSSLTFSFADS HADLTFCSRD
Subjt:  MFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLTFCSRD

TYK02997.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.5e-67100Show/hide
Query:  MFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLTFCSRDGHLREIDFPMYHSDGSMDACYDQ
        MFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLTFCSRDGHLREIDFPMYHSDGSMDACYDQ
Subjt:  MFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLTFCSRDGHLREIDFPMYHSDGSMDACYDQ

Query:  LDWETFVSFSSQEFINIVTLNNFDS
        LDWETFVSFSSQEFINIVTLNNFDS
Subjt:  LDWETFVSFSSQEFINIVTLNNFDS

XP_023006011.1 uncharacterized protein LOC111498888 [Cucurbita maxima]3.4e-2747.51Show/hide
Query:  MFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLT----------------------------
        MFSIMA  TPS  C IALQL P FFN  Y C QLHY +IYI  F+  M + ER GFSSLTF+F +    D                              
Subjt:  MFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLT----------------------------

Query:  ---FCSRDGHLREIDFPMYHSDGSMDACYDQLDWETFVSFSSQEFINIVT-LNNFDSVLVTLTNSQVKFSYAGTQMILTQE
           F   +GH  E++ PM+ S   MD      D+ TFVS  SQEFINIVT  N+FD VLVTLTNSQV FSY  T++ILTQE
Subjt:  ---FCSRDGHLREIDFPMYHSDGSMDACYDQLDWETFVSFSSQEFINIVT-LNNFDSVLVTLTNSQVKFSYAGTQMILTQE

XP_023548336.1 uncharacterized protein LOC111807004 [Cucurbita pepo subsp. pepo]1.3e-2646.41Show/hide
Query:  MFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLT----------------------------
        MFSIMA  TPS  C IALQL P FFN  Y C QLHY +IYI  F+  M + ER GFSSLTF+F +    D                              
Subjt:  MFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLT----------------------------

Query:  ---FCSRDGHLREIDFPMYHSDGSMDACYDQLDWETFVSFSSQEFINIVT-LNNFDSVLVTLTNSQVKFSYAGTQMILTQE
           F   +GH  E++ PM+ S   MD      D+ TFVS  SQEFINIVT  N+FD VLVTL NSQV FSY  T+++LTQE
Subjt:  ---FCSRDGHLREIDFPMYHSDGSMDACYDQLDWETFVSFSSQEFINIVT-LNNFDSVLVTLTNSQVKFSYAGTQMILTQE

TrEMBL top hitse value%identityAlignment
A0A0A0K833 Uncharacterized protein4.7e-3594.87Show/hide
Query:  MFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLTFCSRDG
        MFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYIN FFPEMF +ERTGFSSLTFSFADS HADLTFCSRDG
Subjt:  MFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLTFCSRDG

A0A5D3BU35 LINE-1 retrotransposable element ORF2 protein1.2e-67100Show/hide
Query:  MFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLTFCSRDGHLREIDFPMYHSDGSMDACYDQ
        MFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLTFCSRDGHLREIDFPMYHSDGSMDACYDQ
Subjt:  MFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLTFCSRDGHLREIDFPMYHSDGSMDACYDQ

Query:  LDWETFVSFSSQEFINIVTLNNFDS
        LDWETFVSFSSQEFINIVTLNNFDS
Subjt:  LDWETFVSFSSQEFINIVTLNNFDS

A0A6J1H4N0 uncharacterized protein LOC1114600093.4e-2545.3Show/hide
Query:  MFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLT----------------------------
        MFSIMA  TPS  C I LQL P FFN  Y C QLHY +IYI  F+  M + ER GFSSLTF+F +    D                              
Subjt:  MFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLT----------------------------

Query:  ---FCSRDGHLREIDFPMYHSDGSMDACYDQLDWETFVSFSSQEFINIVT-LNNFDSVLVTLTNSQVKFSYAGTQMILTQE
           F   +GH  E++ PM+ S   MD      D  TFVS  SQEFINIVT  N+FD VLVTL NSQV FSY  T+++LT+E
Subjt:  ---FCSRDGHLREIDFPMYHSDGSMDACYDQLDWETFVSFSSQEFINIVT-LNNFDSVLVTLTNSQVKFSYAGTQMILTQE

A0A6J1H678 uncharacterized protein LOC1114603983.4e-2550.68Show/hide
Query:  SIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLTFCSRDGHLREIDFPMYHSDGSMDACYDQLD
        SIM + +P  +C IA+QL PP+F Q Y+C  LHYSWI I+  FP M D+ R GFSSL+FSF     A+L F      LRE DF +  S+GS D      D
Subjt:  SIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLTFCSRDGHLREIDFPMYHSDGSMDACYDQLD

Query:  WETFVSFSSQEFINIVT-LNNFDSVLVTLTNSQVKFSYAGTQMILTQE
        + TFV+  S+EFINI+T    +  VLVTLT+SQVKFSY   Q I+T+E
Subjt:  WETFVSFSSQEFINIVT-LNNFDSVLVTLTNSQVKFSYAGTQMILTQE

A0A6J1KWL1 uncharacterized protein LOC1114988881.6e-2747.51Show/hide
Query:  MFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLT----------------------------
        MFSIMA  TPS  C IALQL P FFN  Y C QLHY +IYI  F+  M + ER GFSSLTF+F +    D                              
Subjt:  MFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLT----------------------------

Query:  ---FCSRDGHLREIDFPMYHSDGSMDACYDQLDWETFVSFSSQEFINIVT-LNNFDSVLVTLTNSQVKFSYAGTQMILTQE
           F   +GH  E++ PM+ S   MD      D+ TFVS  SQEFINIVT  N+FD VLVTLTNSQV FSY  T++ILTQE
Subjt:  ---FCSRDGHLREIDFPMYHSDGSMDACYDQLDWETFVSFSSQEFINIVT-LNNFDSVLVTLTNSQVKFSYAGTQMILTQE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTCAATAATGGCCAACCCCACACCTTCCCCTTCTTGTACCATAGCCCTTCAACTATTCCCTCCATTCTTCAATCAACAATATTCCTGCCAACAACTTCAC
TACTCATGGATTTACATCAACCCCTTTTTCCCTGAAATGTTCGATATGGAACGAACCGGTTTTTCTTCCCTCACGTTCTCTTTCGCAGATTCGCTCCATGCCGAC
CTCACATTTTGCAGTCGTGATGGCCATCTTCGAGAGATTGATTTCCCAATGTATCATTCGGACGGGTCAATGGATGCCTGCTATGATCAGTTGGATTGGGAAACT
TTCGTCTCCTTCAGTTCACAAGAGTTCATTAACATTGTAACGTTGAATAATTTTGATTCTGTTTTAGTCACATTAACGAATTCACAAGTCAAATTCTCTTATGCT
GGAACACAAATGATTCTTACTCAAGAGGAAGACGGTGCATTATTGGTGGAGTTGGGGAAAGTAATGAAATTGAATTTGTAG
mRNA sequenceShow/hide mRNA sequence
CTTTTCTTATTAACTTGTGAGAACAAACCTAATTGCAAAATCCTTTAACATTGAAATAAAAGAACCCCAAGCTCTTCGCCATTTAAACACCAAGAAACTAAAACC
CCAAATGGCAGAAGTAGTGATCTCATAACACAATGTTCGTCTTTATACTGGAAGAAATCCACAGCTTCGTCATGCCGTCTCCGTCCTCGCCGGCCTTGGCTACGT
TTTCAATCTCAAATTCTCACCAGAAATGTTCTCAATAATGGCCAACCCCACACCTTCCCCTTCTTGTACCATAGCCCTTCAACTATTCCCTCCATTCTTCAATCA
ACAATATTCCTGCCAACAACTTCACTACTCATGGATTTACATCAACCCCTTTTTCCCTGAAATGTTCGATATGGAACGAACCGGTTTTTCTTCCCTCACGTTCTC
TTTCGCAGATTCGCTCCATGCCGACCTCACATTTTGCAGTCGTGATGGCCATCTTCGAGAGATTGATTTCCCAATGTATCATTCGGACGGGTCAATGGATGCCTG
CTATGATCAGTTGGATTGGGAAACTTTCGTCTCCTTCAGTTCACAAGAGTTCATTAACATTGTAACGTTGAATAATTTTGATTCTGTTTTAGTCACATTAACGAA
TTCACAAGTCAAATTCTCTTATGCTGGAACACAAATGATTCTTACTCAAGAGGAAGACGGTGCATTATTGGTGGAGTTGGGGAAAGTAATGAAATTGAATTTGTA
GTAAATTTGAAAGCAAAGGAAAGTTTATGTAGGTTGGCATGTAGATCAAAAAGGGTTTGGTTATTCAAGTCAAAGGATTCATCCAAAGATATGCAATATGAATCA
AAAAAGCAAAAAGGGCATCATCAAATTCAATACTTTATGGTTGGAAAGAATCAATCGTATTTTTAAAGAAAAGAGCATCTCTACAATCGATCTTTGGG
Protein sequenceShow/hide protein sequence
MFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLTFCSRDGHLREIDFPMYHSDGSMDACYDQLDWET
FVSFSSQEFINIVTLNNFDSVLVTLTNSQVKFSYAGTQMILTQEEDGALLVELGKVMKLNL