; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc11g0310001 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc11g0310001
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationCMiso1.1chr11:30477675..30479650
RNA-Seq ExpressionCmc11g0310001
SyntenyCmc11g0310001
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008458264.1 PREDICTED: uncharacterized protein LOC103497732 [Cucumis melo]8.2e-9793.03Show/hide
Query:  MATLFFVSLHNFAPLADAAALFSNIFYEADVKVSRTQLSMITADRSRWFVAVLHIWEPFFNDYYIDKDITSRISLTSRISLPTFHCHMNRARKDHCSSMN
        MATLFFVSLHNFAPLADAAALFSNIFYEADVKVSRTQLSMITADRSRWFVAVLHIWEPFFNDYYIDKDI      TSRISLPTFHCHMNRARKDHCSSMN
Subjt:  MATLFFVSLHNFAPLADAAALFSNIFYEADVKVSRTQLSMITADRSRWFVAVLHIWEPFFNDYYIDKDITSRISLTSRISLPTFHCHMNRARKDHCSSMN

Query:  IRMQKGHNYLFLEFKNSKKDIYRRMFLSPSREEDLTQTQIDNQNFFSIHSSDFRRIITEVSHLPNDLVIVVTVTNSQVKFSVSSKEIILTEEAGDCQIIG
        IRMQKGHNYLFLEFKNSKKDIYRRMFLSPSREEDLTQTQIDNQNFFSIHSSDFRRIITEVSHLPNDLVIVVTVTNSQVKFSVSSKEIILTEE    ++  
Subjt:  IRMQKGHNYLFLEFKNSKKDIYRRMFLSPSREEDLTQTQIDNQNFFSIHSSDFRRIITEVSHLPNDLVIVVTVTNSQVKFSVSSKEIILTEEAGDCQIIG

Query:  Y
        Y
Subjt:  Y

XP_022958857.1 uncharacterized protein LOC111460011 [Cucurbita moschata]7.6e-3440.62Show/hide
Query:  LFFVSLHNFAPLADAAALFSNIFYEADVKVSRTQLSMITADRSRWFVAVLHIWEPFFNDYYIDKDITSRISLTSRISLPTFHCHMNRARKDHCSSMNIRM
        +F V LH+F PL +A ++ + I  EAD+K S ++ S+IT+  S  FVA   I   FF +Y++D++ +SR+SL S      F+  M        SSM I  
Subjt:  LFFVSLHNFAPLADAAALFSNIFYEADVKVSRTQLSMITADRSRWFVAVLHIWEPFFNDYYIDKDITSRISLTSRISLPTFHCHMNRARKDHCSSMNIRM

Query:  QKGHNYLFLEFKNS---KKDIYRRMFLSPSREEDLTQTQIDNQNFFSIHSSDFRRIITEVSHLPNDLVIVVTVTNSQVKFSVSSKEIILTEEAGDCQIIG
         +  + + L+F++S   +  ++R + LSPS+EE+L Q Q D   FFSI S DFR IIT +   PN+  I V++T+S+VKF  +S+E ILT+E G C I+G
Subjt:  QKGHNYLFLEFKNS---KKDIYRRMFLSPSREEDLTQTQIDNQNFFSIHSSDFRRIITEVSHLPNDLVIVVTVTNSQVKFSVSSKEIILTEEAGDCQIIG

Query:  YEGEVETRFRIILHPTSFFISLSTHSDVIWFHKTISNYAIISIQTLECYIDYAIHF
        YEG+ E  F+I L+P  FF +LS  +  IWF+KTI +  +I I        Y I+F
Subjt:  YEGEVETRFRIILHPTSFFISLSTHSDVIWFHKTISNYAIISIQTLECYIDYAIHF

XP_023006008.1 uncharacterized protein LOC111498886 [Cucurbita maxima]5.4e-3238.76Show/hide
Query:  LFFVSLHNFAPLADAAALFSNIFYEADVKVSRTQLSMITADRSRWFVAVLHIWEPFFNDYYIDKDITSRISLTSRISLPTFHCHMNRARKDHCSSMNIRM
        +F V L +  PL+DA  LF+ +  E DVK +    S+  ++ S  F+  L IW+  F +Y +D       +   RISLPTF   +     +  SSM   M
Subjt:  LFFVSLHNFAPLADAAALFSNIFYEADVKVSRTQLSMITADRSRWFVAVLHIWEPFFNDYYIDKDITSRISLTSRISLPTFHCHMNRARKDHCSSMNIRM

Query:  QKGHNYLFLEFKNSK----KDIYRRMFLSPSREEDLTQTQIDNQNFFSIHSSDFRRIITEVSHLPNDLVIVVTVTNSQVKFSVSSKEIILTEEAGDCQII
         +  + + LEF NS        +R + L PS E D+   +++++  F I + DFR II EVS  PND  I VT+T+ QVKFSV++KEIILT++A   QI 
Subjt:  QKGHNYLFLEFKNSK----KDIYRRMFLSPSREEDLTQTQIDNQNFFSIHSSDFRRIITEVSHLPNDLVIVVTVTNSQVKFSVSSKEIILTEEAGDCQII

Query:  GYEGEVETRFRIILHPTSFFISLSTHSDVIWFHKTI-SNYAIISIQTLECYIDYAIHF
        GYE     +FRI LHP +FF+ LS  S+  WF KT+  ++ IISI      ++Y ++F
Subjt:  GYEGEVETRFRIILHPTSFFISLSTHSDVIWFHKTI-SNYAIISIQTLECYIDYAIHF

XP_023006010.1 uncharacterized protein LOC111498887 [Cucurbita maxima]6.8e-3542.19Show/hide
Query:  LFFVSLHNFAPLADAAALFSNIFYEADVKVSRTQLSMITADRSRWFVAVLHIWEPFFNDYYIDKDITSRISLTSRISLPTFHCHMNRARKDHCSSMNIRM
        +F V LH+F PL +A +L + I  EAD+K S ++ S+IT+  SR FVA   I   FF +Y +D++ +SR+SL S      F+  M        SSM I  
Subjt:  LFFVSLHNFAPLADAAALFSNIFYEADVKVSRTQLSMITADRSRWFVAVLHIWEPFFNDYYIDKDITSRISLTSRISLPTFHCHMNRARKDHCSSMNIRM

Query:  QKGHNYLFLEFKNS---KKDIYRRMFLSPSREEDLTQTQIDNQNFFSIHSSDFRRIITEVSHLPNDLVIVVTVTNSQVKFSVSSKEIILTEEAGDCQIIG
         +  + + L+F++S   K  ++R + LSPS+EE+L Q Q D   FFSI S DFR IIT +   PN+  I V++T+S+VKF  +S+E ILT+E G C IIG
Subjt:  QKGHNYLFLEFKNS---KKDIYRRMFLSPSREEDLTQTQIDNQNFFSIHSSDFRRIITEVSHLPNDLVIVVTVTNSQVKFSVSSKEIILTEEAGDCQIIG

Query:  YEGEVETRFRIILHPTSFFISLSTHSDVIWFHKTISNYAIISIQTLECYIDYAIHF
        YEGE E  F+I L+P  FF +LS  +  IWF+KTI +  +I +        Y I+F
Subjt:  YEGEVETRFRIILHPTSFFISLSTHSDVIWFHKTISNYAIISIQTLECYIDYAIHF

XP_023548334.1 uncharacterized protein LOC111807002 [Cucurbita pepo subsp. pepo]3.1e-3541.02Show/hide
Query:  LFFVSLHNFAPLADAAALFSNIFYEADVKVSRTQLSMITADRSRWFVAVLHIWEPFFNDYYIDKDITSRISLTSRISLPTFHCHMNRARKDHCSSMNIRM
        +F V LH+F PL +A ++ + I +EAD+K S ++ S+IT+  S  FVA   I   FF +Y++D++ +SR+SL S      F+  M        SSM I  
Subjt:  LFFVSLHNFAPLADAAALFSNIFYEADVKVSRTQLSMITADRSRWFVAVLHIWEPFFNDYYIDKDITSRISLTSRISLPTFHCHMNRARKDHCSSMNIRM

Query:  QKGHNYLFLEFKNS---KKDIYRRMFLSPSREEDLTQTQIDNQNFFSIHSSDFRRIITEVSHLPNDLVIVVTVTNSQVKFSVSSKEIILTEEAGDCQIIG
         +  + + L+F++S   +  ++R + LSPS+EE+L Q Q D   FFSI S DFR I+T +   PND  I V++T+SQVKF  +S+E ILT+E G C I+G
Subjt:  QKGHNYLFLEFKNS---KKDIYRRMFLSPSREEDLTQTQIDNQNFFSIHSSDFRRIITEVSHLPNDLVIVVTVTNSQVKFSVSSKEIILTEEAGDCQIIG

Query:  YEGEVETRFRIILHPTSFFISLSTHSDVIWFHKTISNYAIISIQTLECYIDYAIHF
        YEG+ E  F+I L+P  FF +LS  +  IWF+KTI +  +I I        Y I+F
Subjt:  YEGEVETRFRIILHPTSFFISLSTHSDVIWFHKTISNYAIISIQTLECYIDYAIHF

TrEMBL top hitse value%identityAlignment
A0A1S3C7K5 uncharacterized protein LOC1034977324.0e-9793.03Show/hide
Query:  MATLFFVSLHNFAPLADAAALFSNIFYEADVKVSRTQLSMITADRSRWFVAVLHIWEPFFNDYYIDKDITSRISLTSRISLPTFHCHMNRARKDHCSSMN
        MATLFFVSLHNFAPLADAAALFSNIFYEADVKVSRTQLSMITADRSRWFVAVLHIWEPFFNDYYIDKDI      TSRISLPTFHCHMNRARKDHCSSMN
Subjt:  MATLFFVSLHNFAPLADAAALFSNIFYEADVKVSRTQLSMITADRSRWFVAVLHIWEPFFNDYYIDKDITSRISLTSRISLPTFHCHMNRARKDHCSSMN

Query:  IRMQKGHNYLFLEFKNSKKDIYRRMFLSPSREEDLTQTQIDNQNFFSIHSSDFRRIITEVSHLPNDLVIVVTVTNSQVKFSVSSKEIILTEEAGDCQIIG
        IRMQKGHNYLFLEFKNSKKDIYRRMFLSPSREEDLTQTQIDNQNFFSIHSSDFRRIITEVSHLPNDLVIVVTVTNSQVKFSVSSKEIILTEE    ++  
Subjt:  IRMQKGHNYLFLEFKNSKKDIYRRMFLSPSREEDLTQTQIDNQNFFSIHSSDFRRIITEVSHLPNDLVIVVTVTNSQVKFSVSSKEIILTEEAGDCQIIG

Query:  Y
        Y
Subjt:  Y

A0A6J1H2Z8 uncharacterized protein LOC1114600113.7e-3440.62Show/hide
Query:  LFFVSLHNFAPLADAAALFSNIFYEADVKVSRTQLSMITADRSRWFVAVLHIWEPFFNDYYIDKDITSRISLTSRISLPTFHCHMNRARKDHCSSMNIRM
        +F V LH+F PL +A ++ + I  EAD+K S ++ S+IT+  S  FVA   I   FF +Y++D++ +SR+SL S      F+  M        SSM I  
Subjt:  LFFVSLHNFAPLADAAALFSNIFYEADVKVSRTQLSMITADRSRWFVAVLHIWEPFFNDYYIDKDITSRISLTSRISLPTFHCHMNRARKDHCSSMNIRM

Query:  QKGHNYLFLEFKNS---KKDIYRRMFLSPSREEDLTQTQIDNQNFFSIHSSDFRRIITEVSHLPNDLVIVVTVTNSQVKFSVSSKEIILTEEAGDCQIIG
         +  + + L+F++S   +  ++R + LSPS+EE+L Q Q D   FFSI S DFR IIT +   PN+  I V++T+S+VKF  +S+E ILT+E G C I+G
Subjt:  QKGHNYLFLEFKNS---KKDIYRRMFLSPSREEDLTQTQIDNQNFFSIHSSDFRRIITEVSHLPNDLVIVVTVTNSQVKFSVSSKEIILTEEAGDCQIIG

Query:  YEGEVETRFRIILHPTSFFISLSTHSDVIWFHKTISNYAIISIQTLECYIDYAIHF
        YEG+ E  F+I L+P  FF +LS  +  IWF+KTI +  +I I        Y I+F
Subjt:  YEGEVETRFRIILHPTSFFISLSTHSDVIWFHKTISNYAIISIQTLECYIDYAIHF

A0A6J1H490 uncharacterized protein LOC1114600132.5e-3039.34Show/hide
Query:  TLFFVSLHNFAPLADAAALFSNIFYEADVKVSRTQLSMITADRSRWFVAVLHIWEPFFNDYYIDKDITSRISLTSRISLPTFHCHMNRARKDHCSSMNIR
        T+F V L +  PL+DA  LF+ +  EADVK +    S+  ++ S  F+  L IW+  F +Y +D +   RISL+      TF   +        SSM   
Subjt:  TLFFVSLHNFAPLADAAALFSNIFYEADVKVSRTQLSMITADRSRWFVAVLHIWEPFFNDYYIDKDITSRISLTSRISLPTFHCHMNRARKDHCSSMNIR

Query:  MQKGHNYLFLEFKNSKK----DIYRRMFLSPSREEDLTQTQIDNQNFFSIHSSDFRRIITEVSHLPNDLVIVVTVTNSQVKFSVSSKEIILTEEAGDCQI
        M +  + + LEF NS        +R + L PS E D+   +++++  F I + DFR II EVS  PND  I VT+T+ QVKFSV+SKEIILT++A   QI
Subjt:  MQKGHNYLFLEFKNSKK----DIYRRMFLSPSREEDLTQTQIDNQNFFSIHSSDFRRIITEVSHLPNDLVIVVTVTNSQVKFSVSSKEIILTEEAGDCQI

Query:  IGYEGEVETRFRIILHPTSFFISLSTHSDVIWFHKTISNYAIIS
         GYE     +FRI LHP  FF+ LS  S+  WF KT+    +++
Subjt:  IGYEGEVETRFRIILHPTSFFISLSTHSDVIWFHKTISNYAIIS

A0A6J1KZ05 uncharacterized protein LOC1114988873.3e-3542.19Show/hide
Query:  LFFVSLHNFAPLADAAALFSNIFYEADVKVSRTQLSMITADRSRWFVAVLHIWEPFFNDYYIDKDITSRISLTSRISLPTFHCHMNRARKDHCSSMNIRM
        +F V LH+F PL +A +L + I  EAD+K S ++ S+IT+  SR FVA   I   FF +Y +D++ +SR+SL S      F+  M        SSM I  
Subjt:  LFFVSLHNFAPLADAAALFSNIFYEADVKVSRTQLSMITADRSRWFVAVLHIWEPFFNDYYIDKDITSRISLTSRISLPTFHCHMNRARKDHCSSMNIRM

Query:  QKGHNYLFLEFKNS---KKDIYRRMFLSPSREEDLTQTQIDNQNFFSIHSSDFRRIITEVSHLPNDLVIVVTVTNSQVKFSVSSKEIILTEEAGDCQIIG
         +  + + L+F++S   K  ++R + LSPS+EE+L Q Q D   FFSI S DFR IIT +   PN+  I V++T+S+VKF  +S+E ILT+E G C IIG
Subjt:  QKGHNYLFLEFKNS---KKDIYRRMFLSPSREEDLTQTQIDNQNFFSIHSSDFRRIITEVSHLPNDLVIVVTVTNSQVKFSVSSKEIILTEEAGDCQIIG

Query:  YEGEVETRFRIILHPTSFFISLSTHSDVIWFHKTISNYAIISIQTLECYIDYAIHF
        YEGE E  F+I L+P  FF +LS  +  IWF+KTI +  +I +        Y I+F
Subjt:  YEGEVETRFRIILHPTSFFISLSTHSDVIWFHKTISNYAIISIQTLECYIDYAIHF

A0A6J1L3R4 uncharacterized protein LOC1114988862.6e-3238.76Show/hide
Query:  LFFVSLHNFAPLADAAALFSNIFYEADVKVSRTQLSMITADRSRWFVAVLHIWEPFFNDYYIDKDITSRISLTSRISLPTFHCHMNRARKDHCSSMNIRM
        +F V L +  PL+DA  LF+ +  E DVK +    S+  ++ S  F+  L IW+  F +Y +D       +   RISLPTF   +     +  SSM   M
Subjt:  LFFVSLHNFAPLADAAALFSNIFYEADVKVSRTQLSMITADRSRWFVAVLHIWEPFFNDYYIDKDITSRISLTSRISLPTFHCHMNRARKDHCSSMNIRM

Query:  QKGHNYLFLEFKNSK----KDIYRRMFLSPSREEDLTQTQIDNQNFFSIHSSDFRRIITEVSHLPNDLVIVVTVTNSQVKFSVSSKEIILTEEAGDCQII
         +  + + LEF NS        +R + L PS E D+   +++++  F I + DFR II EVS  PND  I VT+T+ QVKFSV++KEIILT++A   QI 
Subjt:  QKGHNYLFLEFKNSK----KDIYRRMFLSPSREEDLTQTQIDNQNFFSIHSSDFRRIITEVSHLPNDLVIVVTVTNSQVKFSVSSKEIILTEEAGDCQII

Query:  GYEGEVETRFRIILHPTSFFISLSTHSDVIWFHKTI-SNYAIISIQTLECYIDYAIHF
        GYE     +FRI LHP +FF+ LS  S+  WF KT+  ++ IISI      ++Y ++F
Subjt:  GYEGEVETRFRIILHPTSFFISLSTHSDVIWFHKTI-SNYAIISIQTLECYIDYAIHF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCACCTTGTTCTTTGTCAGCCTTCACAATTTTGCTCCTCTTGCAGACGCAGCCGCTCTGTTTTCTAATATTTTCTATGAAGCCGACGTAAAAGTCTCACGCACACA
GTTGTCGATGATCACCGCAGACCGTTCCCGTTGGTTCGTCGCTGTGCTCCATATTTGGGAACCCTTCTTCAACGACTACTATATCGATAAAGATATCACTTCAAGAATTT
CTCTCACTTCAAGAATTTCTCTCCCAACATTCCATTGTCATATGAATAGAGCAAGAAAAGATCATTGTTCTTCAATGAACATCCGTATGCAGAAAGGCCATAACTACCTT
TTCCTTGAGTTTAAAAATTCAAAAAAAGACATATATCGGAGAATGTTTTTGTCACCTTCACGAGAGGAGGATTTAACCCAAACTCAAATTGATAATCAAAACTTTTTCAG
CATTCATTCGAGTGATTTTAGACGCATAATAACAGAAGTATCTCATTTACCAAATGATTTGGTCATCGTTGTTACCGTTACCAATTCACAAGTCAAGTTCTCTGTTTCAT
CTAAAGAGATTATTCTTACAGAAGAGGCTGGAGATTGTCAAATTATAGGCTATGAAGGGGAAGTCGAAACTCGATTTCGAATCATTCTCCATCCGACTTCGTTTTTCATT
TCATTGTCAACTCATTCAGATGTTATTTGGTTTCATAAGACAATTAGCAACTATGCTATAATCTCTATCCAAACCTTAGAATGTTATATTGATTATGCAATTCATTTTCT
CAATATATGA
mRNA sequenceShow/hide mRNA sequence
CCATTCATGAATTTAATTTCTTAATTTCAAAGGGTTTGGACATATAGAAAAAACTTGATTAATTAGTTATAAAAGGCAATAGTTAGTTTGATATTTTTTGAAGAACAATA
AGTTGGGATTTATTCATACATTCATTTTAATTCACACCATGGCCACCTTGTTCTTTGTCAGCCTTCACAATTTTGCTCCTCTTGCAGACGCAGCCGCTCTGTTTTCTAAT
ATTTTCTATGAAGCCGACGTAAAAGTCTCACGCACACAGTTGTCGATGATCACCGCAGACCGTTCCCGTTGGTTCGTCGCTGTGCTCCATATTTGGGAACCCTTCTTCAA
CGACTACTATATCGATAAAGATATCACTTCAAGAATTTCTCTCACTTCAAGAATTTCTCTCCCAACATTCCATTGTCATATGAATAGAGCAAGAAAAGATCATTGTTCTT
CAATGAACATCCGTATGCAGAAAGGCCATAACTACCTTTTCCTTGAGTTTAAAAATTCAAAAAAAGACATATATCGGAGAATGTTTTTGTCACCTTCACGAGAGGAGGAT
TTAACCCAAACTCAAATTGATAATCAAAACTTTTTCAGCATTCATTCGAGTGATTTTAGACGCATAATAACAGAAGTATCTCATTTACCAAATGATTTGGTCATCGTTGT
TACCGTTACCAATTCACAAGTCAAGTTCTCTGTTTCATCTAAAGAGATTATTCTTACAGAAGAGGCTGGAGATTGTCAAATTATAGGCTATGAAGGGGAAGTCGAAACTC
GATTTCGAATCATTCTCCATCCGACTTCGTTTTTCATTTCATTGTCAACTCATTCAGATGTTATTTGGTTTCATAAGACAATTAGCAACTATGCTATAATCTCTATCCAA
ACCTTAGAATGTTATATTGATTATGCAATTCATTTTCTCAATATATGACATGAAAATCTAGTATATATAAGCACAGACGTTGTTGTTTTTTTTTTCTTCTTCTTTTTAAC
AATATACAAGATGTGGGAGAGATCGGAAAATAATCCACTCAAATATCTCAACGTGGTCGATATATTCTTTTTGGACCAAATTTGTAATTAAACCTATA
Protein sequenceShow/hide protein sequence
MATLFFVSLHNFAPLADAAALFSNIFYEADVKVSRTQLSMITADRSRWFVAVLHIWEPFFNDYYIDKDITSRISLTSRISLPTFHCHMNRARKDHCSSMNIRMQKGHNYL
FLEFKNSKKDIYRRMFLSPSREEDLTQTQIDNQNFFSIHSSDFRRIITEVSHLPNDLVIVVTVTNSQVKFSVSSKEIILTEEAGDCQIIGYEGEVETRFRIILHPTSFFI
SLSTHSDVIWFHKTISNYAIISIQTLECYIDYAIHFLNI