; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc12g0317801 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc12g0317801
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRibonuclease H
Genome locationCMiso1.1chr12:3118651..3119520
RNA-Seq ExpressionCmc12g0317801
SyntenyCmc12g0317801
Gene Ontology termsNA
InterPro domainsIPR041373 - Reverse transcriptase, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033244.1 uncharacterized protein E6C27_scaffold845G00390 [Cucumis melo var. makuwa]8.7e-14892.96Show/hide
Query:  MNPLKCAFGVTSGKFLGFIVRHQGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLASRCQPFQKLMRKGENFVWNEACQNDFDSIKKYLLN
        MNPLKCAF VTSGKFLGFIVRH+GIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLA RCQPFQKLMRKGENFVW+EACQN FDSIKKYLLN
Subjt:  MNPLKCAFGVTSGKFLGFIVRHQGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLASRCQPFQKLMRKGENFVWNEACQNDFDSIKKYLLN

Query:  PLVLGALVPGEPLILYIAAQERSLGALLAQEKEKGKERALYYLSKTLVGAEVNYSSIEKMCLALFFAIDKLRHYMQAFTVHLVAKADPIKYVLSRPIISG
        P VLGA +PGEPLILYIAAQERSLGALLAQEKEKGKE ALYYLS+TLVGAEVNYS IEKMCLALFFAIDKLRHYMQAFTVHLVAK DPIKYVLSRPIISG
Subjt:  PLVLGALVPGEPLILYIAAQERSLGALLAQEKEKGKERALYYLSKTLVGAEVNYSSIEKMCLALFFAIDKLRHYMQAFTVHLVAKADPIKYVLSRPIISG

Query:  RLAKWAVILQQYDIVYISQKTIKGQALVDFLADHPIPSDWKLCEDLPDDEVFFTEVVEPWTMYFDGAARRSGAGAGIVLISPER
         LAKWAVILQQYDIVYISQKTIKGQAL +FLADHPIPSDWKLCE LPDDEVFFT++VEPWTMYFDGAARRSGAGAGIVLIS E+
Subjt:  RLAKWAVILQQYDIVYISQKTIKGQALVDFLADHPIPSDWKLCEDLPDDEVFFTEVVEPWTMYFDGAARRSGAGAGIVLISPER

KAA0051588.1 uncharacterized protein E6C27_scaffold174G001310 [Cucumis melo var. makuwa]4.9e-15194.01Show/hide
Query:  MNPLKCAFGVTSGKFLGFIVRHQGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLASRCQPFQKLMRKGENFVWNEACQNDFDSIKKYLLN
        MNPLKCAFGVTSGKFLGFIVRH+GIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLA RCQPFQKLMRKGENFVWNEACQN FDSIKKYLLN
Subjt:  MNPLKCAFGVTSGKFLGFIVRHQGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLASRCQPFQKLMRKGENFVWNEACQNDFDSIKKYLLN

Query:  PLVLGALVPGEPLILYIAAQERSLGALLAQEKEKGKERALYYLSKTLVGAEVNYSSIEKMCLALFFAIDKLRHYMQAFTVHLVAKADPIKYVLSRPIISG
        PLVLGA VPGEPLILYIAAQERSLGALLAQE+EKGKERALYYLS+TLVG EVNYS IEKMC ALFFAIDKLRHYMQAFTVHLVAKADPIKY+LSR IISG
Subjt:  PLVLGALVPGEPLILYIAAQERSLGALLAQEKEKGKERALYYLSKTLVGAEVNYSSIEKMCLALFFAIDKLRHYMQAFTVHLVAKADPIKYVLSRPIISG

Query:  RLAKWAVILQQYDIVYISQKTIKGQALVDFLADHPIPSDWKLCEDLPDDEVFFTEVVEPWTMYFDGAARRSGAGAGIVLISPER
        RLAKWA+ILQQYDIVYISQK IKGQAL DFLADHPIPSDWKLC DLPDDEVFFTE+VEPWTMYFDGAARRSGAGAGIVLISPE+
Subjt:  RLAKWAVILQQYDIVYISQKTIKGQALVDFLADHPIPSDWKLCEDLPDDEVFFTEVVEPWTMYFDGAARRSGAGAGIVLISPER

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]4.3e-14791.9Show/hide
Query:  MNPLKCAFGVTSGKFLGFIVRHQGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLASRCQPFQKLMRKGENFVWNEACQNDFDSIKKYLLN
        MNPLKCAFGVTSGKFLGFIVRH+GIEIDQSKIDAIQKM RPKSLHDLRSLQGRLAYIRRFISNLA RCQPFQKLMRKGENFVW+EACQN FDSIKKYLL 
Subjt:  MNPLKCAFGVTSGKFLGFIVRHQGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLASRCQPFQKLMRKGENFVWNEACQNDFDSIKKYLLN

Query:  PLVLGALVPGEPLILYIAAQERSLGALLAQEKEKGKERALYYLSKTLVGAEVNYSSIEKMCLALFFAIDKLRHYMQAFTVHLVAKADPIKYVLSRPIISG
        P VLGA VP +PLILYIAAQERSLGALLAQE+ KGKER+LYYLS+TL+GAEVNYS IEKMCLALFFAIDKLRHYMQAFTVHLVAKADPIKYVLSRPIISG
Subjt:  PLVLGALVPGEPLILYIAAQERSLGALLAQEKEKGKERALYYLSKTLVGAEVNYSSIEKMCLALFFAIDKLRHYMQAFTVHLVAKADPIKYVLSRPIISG

Query:  RLAKWAVILQQYDIVYISQKTIKGQALVDFLADHPIPSDWKLCEDLPDDEVFFTEVVEPWTMYFDGAARRSGAGAGIVLISPER
        RLAKWAV+LQQYDIVYI QK IKGQAL DFLADHPIPSDWKLC+DLPDDEVFFTEV+EPWTMYFDGAARRSGAGAGIVLISPE+
Subjt:  RLAKWAVILQQYDIVYISQKTIKGQALVDFLADHPIPSDWKLCEDLPDDEVFFTEVVEPWTMYFDGAARRSGAGAGIVLISPER

XP_031742390.1 uncharacterized protein LOC116401672 [Cucumis sativus]9.6e-14791.55Show/hide
Query:  MNPLKCAFGVTSGKFLGFIVRHQGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLASRCQPFQKLMRKGENFVWNEACQNDFDSIKKYLLN
        MNPLKCAFGVTSGKFLGFIVRH+GIEIDQSKIDAIQKM RPKSLHDLRSLQGRLAYIRRFISNLA RCQPFQKLMRKGENFVW+EACQN FDSIKKYLL 
Subjt:  MNPLKCAFGVTSGKFLGFIVRHQGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLASRCQPFQKLMRKGENFVWNEACQNDFDSIKKYLLN

Query:  PLVLGALVPGEPLILYIAAQERSLGALLAQEKEKGKERALYYLSKTLVGAEVNYSSIEKMCLALFFAIDKLRHYMQAFTVHLVAKADPIKYVLSRPIISG
        P VLGA VP +PLILYIAAQERSLGALLAQE+ KGKER+LYYLS+TL+GAEVNYS IEKMCLALFFAIDKLRHYMQAFTVHLVAKADPIKYVLSRPII+G
Subjt:  PLVLGALVPGEPLILYIAAQERSLGALLAQEKEKGKERALYYLSKTLVGAEVNYSSIEKMCLALFFAIDKLRHYMQAFTVHLVAKADPIKYVLSRPIISG

Query:  RLAKWAVILQQYDIVYISQKTIKGQALVDFLADHPIPSDWKLCEDLPDDEVFFTEVVEPWTMYFDGAARRSGAGAGIVLISPER
        RLAKWAV+LQQYDIVYI QK IKGQAL DFLADHPIPSDWKLC+DLPDDEVFFTEV+EPWTMYFDGAARRSGAGAGIVLISPE+
Subjt:  RLAKWAVILQQYDIVYISQKTIKGQALVDFLADHPIPSDWKLCEDLPDDEVFFTEVVEPWTMYFDGAARRSGAGAGIVLISPER

XP_031742888.1 uncharacterized protein LOC116404510 [Cucumis sativus]4.3e-14791.9Show/hide
Query:  MNPLKCAFGVTSGKFLGFIVRHQGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLASRCQPFQKLMRKGENFVWNEACQNDFDSIKKYLLN
        MNPLKCAFGVTSGKFLGFIVRH+GIEIDQSKIDAIQKM RPKSLHDLRSLQGRLAYIRRFISNLA RCQPFQKLMRKGENFVW+EACQN FDSIKKYLL 
Subjt:  MNPLKCAFGVTSGKFLGFIVRHQGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLASRCQPFQKLMRKGENFVWNEACQNDFDSIKKYLLN

Query:  PLVLGALVPGEPLILYIAAQERSLGALLAQEKEKGKERALYYLSKTLVGAEVNYSSIEKMCLALFFAIDKLRHYMQAFTVHLVAKADPIKYVLSRPIISG
        P VLGA VP +PLILYIAAQERSLGALLAQE+ KGKER+LYYLS+TL+GAEVNYS IEKMCLALFFAIDKLRHYMQAFTVHLVAKADPIKYVLSRPIISG
Subjt:  PLVLGALVPGEPLILYIAAQERSLGALLAQEKEKGKERALYYLSKTLVGAEVNYSSIEKMCLALFFAIDKLRHYMQAFTVHLVAKADPIKYVLSRPIISG

Query:  RLAKWAVILQQYDIVYISQKTIKGQALVDFLADHPIPSDWKLCEDLPDDEVFFTEVVEPWTMYFDGAARRSGAGAGIVLISPER
        RLAKWAV+LQQYDIVYI QK IKGQAL DFLADHPIPSDWKLC+DLPDDEVFFTEV+EPWTMYFDGAARRSGAGAGIVLISPE+
Subjt:  RLAKWAVILQQYDIVYISQKTIKGQALVDFLADHPIPSDWKLCEDLPDDEVFFTEVVEPWTMYFDGAARRSGAGAGIVLISPER

TrEMBL top hitse value%identityAlignment
A0A5A7SPV8 Ribonuclease H4.2e-14892.96Show/hide
Query:  MNPLKCAFGVTSGKFLGFIVRHQGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLASRCQPFQKLMRKGENFVWNEACQNDFDSIKKYLLN
        MNPLKCAF VTSGKFLGFIVRH+GIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLA RCQPFQKLMRKGENFVW+EACQN FDSIKKYLLN
Subjt:  MNPLKCAFGVTSGKFLGFIVRHQGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLASRCQPFQKLMRKGENFVWNEACQNDFDSIKKYLLN

Query:  PLVLGALVPGEPLILYIAAQERSLGALLAQEKEKGKERALYYLSKTLVGAEVNYSSIEKMCLALFFAIDKLRHYMQAFTVHLVAKADPIKYVLSRPIISG
        P VLGA +PGEPLILYIAAQERSLGALLAQEKEKGKE ALYYLS+TLVGAEVNYS IEKMCLALFFAIDKLRHYMQAFTVHLVAK DPIKYVLSRPIISG
Subjt:  PLVLGALVPGEPLILYIAAQERSLGALLAQEKEKGKERALYYLSKTLVGAEVNYSSIEKMCLALFFAIDKLRHYMQAFTVHLVAKADPIKYVLSRPIISG

Query:  RLAKWAVILQQYDIVYISQKTIKGQALVDFLADHPIPSDWKLCEDLPDDEVFFTEVVEPWTMYFDGAARRSGAGAGIVLISPER
         LAKWAVILQQYDIVYISQKTIKGQAL +FLADHPIPSDWKLCE LPDDEVFFT++VEPWTMYFDGAARRSGAGAGIVLIS E+
Subjt:  RLAKWAVILQQYDIVYISQKTIKGQALVDFLADHPIPSDWKLCEDLPDDEVFFTEVVEPWTMYFDGAARRSGAGAGIVLISPER

A0A5A7T485 Reverse transcriptase1.0e-14699.24Show/hide
Query:  MNPLKCAFGVTSGKFLGFIVRHQGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLASRCQPFQKLMRKGENFVWNEACQNDFDSIKKYLLN
        MNPLKCAFGVTSGKFLGFIVRHQGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLASRCQPFQKLMRKGENFVWNEACQNDFDSIKKYLLN
Subjt:  MNPLKCAFGVTSGKFLGFIVRHQGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLASRCQPFQKLMRKGENFVWNEACQNDFDSIKKYLLN

Query:  PLVLGALVPGEPLILYIAAQERSLGALLAQEKEKGKERALYYLSKTLVGAEVNYSSIEKMCLALFFAIDKLRHYMQAFTVHLVAKADPIKYVLSRPIISG
        PLVLGALVPGEPLILYIAAQERSLGALLAQEKEKGKERALYYLSKTLVGAEVNYSSIEKMCLALFFAIDKLRHYMQAFTVHLVAKADPIKYVLSRPIISG
Subjt:  PLVLGALVPGEPLILYIAAQERSLGALLAQEKEKGKERALYYLSKTLVGAEVNYSSIEKMCLALFFAIDKLRHYMQAFTVHLVAKADPIKYVLSRPIISG

Query:  RLAKWAVILQQYDIVYISQKTIKGQALVDFLADHPIPSDWKLCEDLPDDEVFFTEVVEPWTMY
        RLAKWAVILQQYDIVYISQKTIKGQALVDFLADHPIPSDWKLCEDLPDDEVFFTEVVEPWT++
Subjt:  RLAKWAVILQQYDIVYISQKTIKGQALVDFLADHPIPSDWKLCEDLPDDEVFFTEVVEPWTMY

A0A5A7U8J5 Ribonuclease H2.4e-15194.01Show/hide
Query:  MNPLKCAFGVTSGKFLGFIVRHQGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLASRCQPFQKLMRKGENFVWNEACQNDFDSIKKYLLN
        MNPLKCAFGVTSGKFLGFIVRH+GIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLA RCQPFQKLMRKGENFVWNEACQN FDSIKKYLLN
Subjt:  MNPLKCAFGVTSGKFLGFIVRHQGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLASRCQPFQKLMRKGENFVWNEACQNDFDSIKKYLLN

Query:  PLVLGALVPGEPLILYIAAQERSLGALLAQEKEKGKERALYYLSKTLVGAEVNYSSIEKMCLALFFAIDKLRHYMQAFTVHLVAKADPIKYVLSRPIISG
        PLVLGA VPGEPLILYIAAQERSLGALLAQE+EKGKERALYYLS+TLVG EVNYS IEKMC ALFFAIDKLRHYMQAFTVHLVAKADPIKY+LSR IISG
Subjt:  PLVLGALVPGEPLILYIAAQERSLGALLAQEKEKGKERALYYLSKTLVGAEVNYSSIEKMCLALFFAIDKLRHYMQAFTVHLVAKADPIKYVLSRPIISG

Query:  RLAKWAVILQQYDIVYISQKTIKGQALVDFLADHPIPSDWKLCEDLPDDEVFFTEVVEPWTMYFDGAARRSGAGAGIVLISPER
        RLAKWA+ILQQYDIVYISQK IKGQAL DFLADHPIPSDWKLC DLPDDEVFFTE+VEPWTMYFDGAARRSGAGAGIVLISPE+
Subjt:  RLAKWAVILQQYDIVYISQKTIKGQALVDFLADHPIPSDWKLCEDLPDDEVFFTEVVEPWTMYFDGAARRSGAGAGIVLISPER

A0A5D3BV77 Reverse transcriptase1.0e-14699.24Show/hide
Query:  MNPLKCAFGVTSGKFLGFIVRHQGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLASRCQPFQKLMRKGENFVWNEACQNDFDSIKKYLLN
        MNPLKCAFGVTSGKFLGFIVRHQGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLASRCQPFQKLMRKGENFVWNEACQNDFDSIKKYLLN
Subjt:  MNPLKCAFGVTSGKFLGFIVRHQGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLASRCQPFQKLMRKGENFVWNEACQNDFDSIKKYLLN

Query:  PLVLGALVPGEPLILYIAAQERSLGALLAQEKEKGKERALYYLSKTLVGAEVNYSSIEKMCLALFFAIDKLRHYMQAFTVHLVAKADPIKYVLSRPIISG
        PLVLGALVPGEPLILYIAAQERSLGALLAQEKEKGKERALYYLSKTLVGAEVNYSSIEKMCLALFFAIDKLRHYMQAFTVHLVAKADPIKYVLSRPIISG
Subjt:  PLVLGALVPGEPLILYIAAQERSLGALLAQEKEKGKERALYYLSKTLVGAEVNYSSIEKMCLALFFAIDKLRHYMQAFTVHLVAKADPIKYVLSRPIISG

Query:  RLAKWAVILQQYDIVYISQKTIKGQALVDFLADHPIPSDWKLCEDLPDDEVFFTEVVEPWTMY
        RLAKWAVILQQYDIVYISQKTIKGQALVDFLADHPIPSDWKLCEDLPDDEVFFTEVVEPWT++
Subjt:  RLAKWAVILQQYDIVYISQKTIKGQALVDFLADHPIPSDWKLCEDLPDDEVFFTEVVEPWTMY

A0A5D3DZI7 Uncharacterized protein6.1e-14791.9Show/hide
Query:  MNPLKCAFGVTSGKFLGFIVRHQGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLASRCQPFQKLMRKGENFVWNEACQNDFDSIKKYLLN
        MNPLKCAFGVTSGKFLGFIVRH+GIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYI+RFISNLA RCQPFQKLMRKGE F+W+EACQN FDSIKKYLLN
Subjt:  MNPLKCAFGVTSGKFLGFIVRHQGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLASRCQPFQKLMRKGENFVWNEACQNDFDSIKKYLLN

Query:  PLVLGALVPGEPLILYIAAQERSLGALLAQEKEKGKERALYYLSKTLVGAEVNYSSIEKMCLALFFAIDKLRHYMQAFTVHLVAKADPIKYVLSRPIISG
        P VLGA VP EPLILYIAAQERSLGALLAQE+EKGKERALYYLS+TLVGAEVNYS IEKMCLALFFAIDKLRHYMQAFTVHLVAKADPIKYVLSRPIISG
Subjt:  PLVLGALVPGEPLILYIAAQERSLGALLAQEKEKGKERALYYLSKTLVGAEVNYSSIEKMCLALFFAIDKLRHYMQAFTVHLVAKADPIKYVLSRPIISG

Query:  RLAKWAVILQQYDIVYISQKTIKGQALVDFLADHPIPSDWKLCEDLPDDEVFFTEVVEPWTMYFDGAARRSGAGAGIVLISPER
        RLAKW +ILQQYDIVYISQK IKGQAL D LADHPIPSDWKLCEDLPDDEVFFTE+VEPWTMYFDGA RRS AGA IVLISPE+
Subjt:  RLAKWAVILQQYDIVYISQKTIKGQALVDFLADHPIPSDWKLCEDLPDDEVFFTEVVEPWTMYFDGAARRSGAGAGIVLISPER

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein1.2e-1925.49Show/hide
Query:  MNPLKCAFGVTSGKFLGFIVRHQGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLASRCQPFQKLMRKGENFVWNEACQNDFDSIKKYLLN
        +N  KC F  +  KF+G+ +  +G    Q  ID + +  +PK+  +LR   G + Y+R+FI   +    P   L++K   + W        ++IK+ L++
Subjt:  MNPLKCAFGVTSGKFLGFIVRHQGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLASRCQPFQKLMRKGENFVWNEACQNDFDSIKKYLLN

Query:  PLVLGALVPGEPLILYIAAQERSLGALLAQEKEKGKERALYYLSKTLVGAEVNYSSIEKMCLALFFAIDKLRHYMQAFTVHLVAKADPIKYVLSRPIISG
        P VL      + ++L   A + ++GA+L+Q+ +  K   + Y S  +  A++NYS  +K  LA+  ++   RHY++       +  +P K +     + G
Subjt:  PLVLGALVPGEPLILYIAAQERSLGALLAQEKEKGKERALYYLSKTLVGAEVNYSSIEKMCLALFFAIDKLRHYMQAFTVHLVAKADPIKYVLSRPIISG

Query:  -----------RLAKWAVILQQYDIVYISQKTIKGQALVDFLA-----DHPIPSD
                   RLA+W + LQ ++   I+ +      + D L+       PIP D
Subjt:  -----------RLAKWAVILQQYDIVYISQKTIKGQALVDFLA-----DHPIPSD

P0CT35 Transposon Tf2-2 polyprotein1.2e-1925.49Show/hide
Query:  MNPLKCAFGVTSGKFLGFIVRHQGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLASRCQPFQKLMRKGENFVWNEACQNDFDSIKKYLLN
        +N  KC F  +  KF+G+ +  +G    Q  ID + +  +PK+  +LR   G + Y+R+FI   +    P   L++K   + W        ++IK+ L++
Subjt:  MNPLKCAFGVTSGKFLGFIVRHQGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLASRCQPFQKLMRKGENFVWNEACQNDFDSIKKYLLN

Query:  PLVLGALVPGEPLILYIAAQERSLGALLAQEKEKGKERALYYLSKTLVGAEVNYSSIEKMCLALFFAIDKLRHYMQAFTVHLVAKADPIKYVLSRPIISG
        P VL      + ++L   A + ++GA+L+Q+ +  K   + Y S  +  A++NYS  +K  LA+  ++   RHY++       +  +P K +     + G
Subjt:  PLVLGALVPGEPLILYIAAQERSLGALLAQEKEKGKERALYYLSKTLVGAEVNYSSIEKMCLALFFAIDKLRHYMQAFTVHLVAKADPIKYVLSRPIISG

Query:  -----------RLAKWAVILQQYDIVYISQKTIKGQALVDFLA-----DHPIPSD
                   RLA+W + LQ ++   I+ +      + D L+       PIP D
Subjt:  -----------RLAKWAVILQQYDIVYISQKTIKGQALVDFLA-----DHPIPSD

P0CT41 Transposon Tf2-12 polyprotein1.2e-1925.49Show/hide
Query:  MNPLKCAFGVTSGKFLGFIVRHQGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLASRCQPFQKLMRKGENFVWNEACQNDFDSIKKYLLN
        +N  KC F  +  KF+G+ +  +G    Q  ID + +  +PK+  +LR   G + Y+R+FI   +    P   L++K   + W        ++IK+ L++
Subjt:  MNPLKCAFGVTSGKFLGFIVRHQGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLASRCQPFQKLMRKGENFVWNEACQNDFDSIKKYLLN

Query:  PLVLGALVPGEPLILYIAAQERSLGALLAQEKEKGKERALYYLSKTLVGAEVNYSSIEKMCLALFFAIDKLRHYMQAFTVHLVAKADPIKYVLSRPIISG
        P VL      + ++L   A + ++GA+L+Q+ +  K   + Y S  +  A++NYS  +K  LA+  ++   RHY++       +  +P K +     + G
Subjt:  PLVLGALVPGEPLILYIAAQERSLGALLAQEKEKGKERALYYLSKTLVGAEVNYSSIEKMCLALFFAIDKLRHYMQAFTVHLVAKADPIKYVLSRPIISG

Query:  -----------RLAKWAVILQQYDIVYISQKTIKGQALVDFLA-----DHPIPSD
                   RLA+W + LQ ++   I+ +      + D L+       PIP D
Subjt:  -----------RLAKWAVILQQYDIVYISQKTIKGQALVDFLA-----DHPIPSD

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus2.0e-2228.95Show/hide
Query:  MNPLKCAFGVTSGKFLGFIVRHQGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLASRCQPFQKLMR-----------KGENFVWNEACQN
        +N  K  F  T  +FLG+IV   GI+ D  K+ AI +MP P S+ +L+   G  +Y R+FI + A   +P   L R                  +E    
Subjt:  MNPLKCAFGVTSGKFLGFIVRHQGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLASRCQPFQKLMR-----------KGENFVWNEACQN

Query:  DFDSIKKYLLNPLVLGALVPGEPLILYIAAQERSLGALLAQEKEKGKERALYYLSKTLVGAEVNYSSIEKMCLALFFAIDKLRHYMQ-AFTVHLVAKADP
         F+ +K  L +  +L      +P  L   A   ++GA+L+Q+ ++G++R + Y+S++L   E NY++IEK  LA+ +++D LR Y+  A T+ +     P
Subjt:  DFDSIKKYLLNPLVLGALVPGEPLILYIAAQERSLGALLAQEKEKGKERALYYLSKTLVGAEVNYSSIEKMCLALFFAIDKLRHYMQ-AFTVHLVAKADP

Query:  IKYVLSRPIISGRLAKWAVILQQYDIVYISQKTIKGQALVDFLADHPIPSDWKLCEDL---PDDEV
        + + L     + +L +W   +++Y+   I  K  K   + D L+  P P   +L  DL   P+D++
Subjt:  IKYVLSRPIISGRLAKWAVILQQYDIVYISQKTIKGQALVDFLADHPIPSDWKLCEDL---PDDEV

Q9UR07 Transposon Tf2-11 polyprotein1.2e-1925.49Show/hide
Query:  MNPLKCAFGVTSGKFLGFIVRHQGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLASRCQPFQKLMRKGENFVWNEACQNDFDSIKKYLLN
        +N  KC F  +  KF+G+ +  +G    Q  ID + +  +PK+  +LR   G + Y+R+FI   +    P   L++K   + W        ++IK+ L++
Subjt:  MNPLKCAFGVTSGKFLGFIVRHQGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLASRCQPFQKLMRKGENFVWNEACQNDFDSIKKYLLN

Query:  PLVLGALVPGEPLILYIAAQERSLGALLAQEKEKGKERALYYLSKTLVGAEVNYSSIEKMCLALFFAIDKLRHYMQAFTVHLVAKADPIKYVLSRPIISG
        P VL      + ++L   A + ++GA+L+Q+ +  K   + Y S  +  A++NYS  +K  LA+  ++   RHY++       +  +P K +     + G
Subjt:  PLVLGALVPGEPLILYIAAQERSLGALLAQEKEKGKERALYYLSKTLVGAEVNYSSIEKMCLALFFAIDKLRHYMQAFTVHLVAKADPIKYVLSRPIISG

Query:  -----------RLAKWAVILQQYDIVYISQKTIKGQALVDFLA-----DHPIPSD
                   RLA+W + LQ ++   I+ +      + D L+       PIP D
Subjt:  -----------RLAKWAVILQQYDIVYISQKTIKGQALVDFLA-----DHPIPSD

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACCCTCTCAAATGCGCGTTCGGTGTAACTTCAGGAAAGTTTCTTGGCTTTATTGTAAGGCATCAAGGAATTGAGATAGACCAGTCCAAGATTGATGCCATT
CAGAAGATGCCAAGGCCAAAGAGTTTGCATGACCTAAGAAGTCTCCAGGGAAGATTGGCTTACATTCGAAGGTTCATTTCCAACCTGGCTAGTCGGTGCCAACCT
TTTCAAAAGTTGATGAGAAAAGGAGAAAATTTTGTGTGGAATGAGGCTTGTCAGAATGATTTTGATAGCATAAAGAAATACTTGCTTAATCCCCTAGTATTAGGA
GCTCTAGTACCGGGCGAGCCATTAATATTGTACATTGCTGCACAAGAAAGGTCTCTAGGCGCATTGTTGGCGCAAGAGAAGGAGAAAGGAAAGGAACGTGCTCTC
TACTATCTAAGCAAAACTTTAGTTGGGGCCGAAGTTAACTATTCTTCCATTGAGAAAATGTGCCTTGCACTTTTCTTTGCCATCGATAAGTTGAGGCATTATATG
CAGGCCTTCACGGTTCATCTAGTAGCAAAGGCAGACCCTATAAAGTATGTTCTGTCTAGGCCGATTATCTCTGGACGCTTAGCCAAATGGGCGGTTATACTTCAG
CAATATGACATTGTCTATATTTCCCAAAAGACGATAAAAGGACAAGCGTTGGTAGATTTTTTGGCGGACCACCCAATTCCTTCAGATTGGAAGTTATGTGAGGAT
TTGCCAGATGATGAAGTTTTCTTCACGGAAGTGGTGGAACCTTGGACTATGTATTTTGATGGCGCAGCGCGAAGGAGTGGTGCGGGGGCAGGCATCGTCCTCATT
TCTCCTGAAAGAACATATGTTGCCTTATAG
mRNA sequenceShow/hide mRNA sequence
ATGAACCCTCTCAAATGCGCGTTCGGTGTAACTTCAGGAAAGTTTCTTGGCTTTATTGTAAGGCATCAAGGAATTGAGATAGACCAGTCCAAGATTGATGCCATT
CAGAAGATGCCAAGGCCAAAGAGTTTGCATGACCTAAGAAGTCTCCAGGGAAGATTGGCTTACATTCGAAGGTTCATTTCCAACCTGGCTAGTCGGTGCCAACCT
TTTCAAAAGTTGATGAGAAAAGGAGAAAATTTTGTGTGGAATGAGGCTTGTCAGAATGATTTTGATAGCATAAAGAAATACTTGCTTAATCCCCTAGTATTAGGA
GCTCTAGTACCGGGCGAGCCATTAATATTGTACATTGCTGCACAAGAAAGGTCTCTAGGCGCATTGTTGGCGCAAGAGAAGGAGAAAGGAAAGGAACGTGCTCTC
TACTATCTAAGCAAAACTTTAGTTGGGGCCGAAGTTAACTATTCTTCCATTGAGAAAATGTGCCTTGCACTTTTCTTTGCCATCGATAAGTTGAGGCATTATATG
CAGGCCTTCACGGTTCATCTAGTAGCAAAGGCAGACCCTATAAAGTATGTTCTGTCTAGGCCGATTATCTCTGGACGCTTAGCCAAATGGGCGGTTATACTTCAG
CAATATGACATTGTCTATATTTCCCAAAAGACGATAAAAGGACAAGCGTTGGTAGATTTTTTGGCGGACCACCCAATTCCTTCAGATTGGAAGTTATGTGAGGAT
TTGCCAGATGATGAAGTTTTCTTCACGGAAGTGGTGGAACCTTGGACTATGTATTTTGATGGCGCAGCGCGAAGGAGTGGTGCGGGGGCAGGCATCGTCCTCATT
TCTCCTGAAAGAACATATGTTGCCTTATAG
Protein sequenceShow/hide protein sequence
MNPLKCAFGVTSGKFLGFIVRHQGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLASRCQPFQKLMRKGENFVWNEACQNDFDSIKKYLLNPLVLG
ALVPGEPLILYIAAQERSLGALLAQEKEKGKERALYYLSKTLVGAEVNYSSIEKMCLALFFAIDKLRHYMQAFTVHLVAKADPIKYVLSRPIISGRLAKWAVILQ
QYDIVYISQKTIKGQALVDFLADHPIPSDWKLCEDLPDDEVFFTEVVEPWTMYFDGAARRSGAGAGIVLISPERTYVAL