| GenBank top hits | e value | %identity | Alignment |
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| AAU90333.1 Putative gag and pol polyprotein, identical [Solanum demissum] | 3.0e-51 | 55.79 | Show/hide |
Query: CSQAKITKTSHKSVTRVTEPLELIHSDLCEFDGSLTRNSKRYVLTFIDDCSDYTFIYLLKNKSDAYEMFKVFVTKIENQFNKRIKRLRSDRGTEYDSVAF
CS+AKITK H V R T LEL+H+D+CE G LTR R +TFIDD S +T++YL+KNKSDA+E FK ++ ++ENQF ++IKR+RSDRG EY+S F
Subjt: CSQAKITKTSHKSVTRVTEPLELIHSDLCEFDGSLTRNSKRYVLTFIDDCSDYTFIYLLKNKSDAYEMFKVFVTKIENQFNKRIKRLRSDRGTEYDSVAF
Query: NEFYSSKGIIHETTVPYSLEMNGKAERKNRTLTELVVAILLELGAAPSCWGEIIKTVNYVLNRIPKSNSKTSPYEVLKHKTPNLTYLITW
N F S GIIHETT PYS NG AERKNRTL EL A+L+E A + WGE I T YVLNR+P SK + +E+ K P+L YL W
Subjt: NEFYSSKGIIHETTVPYSLEMNGKAERKNRTLTELVVAILLELGAAPSCWGEIIKTVNYVLNRIPKSNSKTSPYEVLKHKTPNLTYLITW
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| ABI34306.1 Polyprotein, putative [Solanum demissum] | 1.9e-53 | 56.84 | Show/hide |
Query: CSQAKITKTSHKSVTRVTEPLELIHSDLCEFDGSLTRNSKRYVLTFIDDCSDYTFIYLLKNKSDAYEMFKVFVTKIENQFNKRIKRLRSDRGTEYDSVAF
CS+AKITK H V R T+ LEL+H+D+CE G LTR RY +TFIDD S +T++YL+KNKSDA+E FK ++ ++ENQF ++IKR+RSDRG EY+S F
Subjt: CSQAKITKTSHKSVTRVTEPLELIHSDLCEFDGSLTRNSKRYVLTFIDDCSDYTFIYLLKNKSDAYEMFKVFVTKIENQFNKRIKRLRSDRGTEYDSVAF
Query: NEFYSSKGIIHETTVPYSLEMNGKAERKNRTLTELVVAILLELGAAPSCWGEIIKTVNYVLNRIPKSNSKTSPYEVLKHKTPNLTYLITW
N F S GIIHETT PYS NG AERKNRTL EL A+L+E A + WGE I T YVLNR+P SK +P+E+ K P+L YL W
Subjt: NEFYSSKGIIHETTVPYSLEMNGKAERKNRTLTELVVAILLELGAAPSCWGEIIKTVNYVLNRIPKSNSKTSPYEVLKHKTPNLTYLITW
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| AOZ57169.1 integrase, partial [Coccinia grandis] | 1.2e-49 | 75.38 | Show/hide |
Query: ITKTSHKSVTRVTEPLELIHSDLCEFDGSLTRNSKRYVLTFIDDCSDYTFIYLLKNKSDAYEMFKVFVTKIENQFNKRIKRLRSDRGTEYDSVAFNEFYS
ITKTSHKSV RV+EPL+LIHS+LCEFDG LTRNSKRY +TFIDDCSDYTFIYLLKNKSDA++ FK FV ++ENQFN+++KRL DRGT YDS +FN FY+
Subjt: ITKTSHKSVTRVTEPLELIHSDLCEFDGSLTRNSKRYVLTFIDDCSDYTFIYLLKNKSDAYEMFKVFVTKIENQFNKRIKRLRSDRGTEYDSVAFNEFYS
Query: SKGIIHETTVPYSLEMNGKAERKNRTLTEL
S GIIH T PYS EMNGKAERKNRT L
Subjt: SKGIIHETTVPYSLEMNGKAERKNRTLTEL
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| KAA0034938.1 putative Polyprotein [Cucumis melo var. makuwa] | 4.1e-93 | 91.58 | Show/hide |
Query: CSQAKITKTSHKSVTRVTEPLELIHSDLCEFDGSLTRNSKRYVLTFIDDCSDYTFIYLLKNKSDAYEMFKVFVTKIENQFNKRIKRLRSDRGTEYDSVAF
CSQAKITKTSHK VTRVT+PLELIHSDLCEFDG+LTRNSKRYV+TFIDDCSDYTFIYLLKNKSDAYEMFKVFVT+IENQFNKRIKRLRSDRGTEYDSVAF
Subjt: CSQAKITKTSHKSVTRVTEPLELIHSDLCEFDGSLTRNSKRYVLTFIDDCSDYTFIYLLKNKSDAYEMFKVFVTKIENQFNKRIKRLRSDRGTEYDSVAF
Query: NEFYSSKGIIHETTVPYSLEMNGKAERKNRTLTELVVAILLELGAAPSCWGEIIKTVNYVLNRIPKSNSKTSPYEVLKHKTPNLTYLITW
NEFY+SKGIIHETT PYS EMNGK ERKNRTLTEL VAILLE AAPS WGEIIKTVNYVLNRIPKSNSKTSPYEVLKHK PNL+YL TW
Subjt: NEFYSSKGIIHETTVPYSLEMNGKAERKNRTLTELVVAILLELGAAPSCWGEIIKTVNYVLNRIPKSNSKTSPYEVLKHKTPNLTYLITW
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| WP_192824023.1 DDE-type integrase/transposase/recombinase, partial [Escherichia coli] | 1.2e-47 | 49.74 | Show/hide |
Query: MCSQAKITKTSHKSVTRVTEPLELIHSDLCEFDGSLTRNSKRYVLTFIDDCSDYTFIYLLKNKSDAYEMFKVFVTKIENQFNKRIKRLRSDRGTEYDSVA
+C +AK+TKTS KSV R TEPLELIHSD+C+F TR +Y +TFIDD + Y+++YLLKNK +A + F ++ ++ENQ N+RIK +RSDRG EY++
Subjt: MCSQAKITKTSHKSVTRVTEPLELIHSDLCEFDGSLTRNSKRYVLTFIDDCSDYTFIYLLKNKSDAYEMFKVFVTKIENQFNKRIKRLRSDRGTEYDSVA
Query: FNEFYSSKGIIHETTVPYSLEMNGKAERKNRTLTELVVAILLELGAAPSCWGEIIKTVNYVLNRIPKSNSKTSPYEVLKHKTPNLTYLITW
+F +S GI+HE T PYS + NG AERKNRTL +++ A+L+ G + WGE I T NY+LN++P+ +PYE+ K + P+ YL W
Subjt: FNEFYSSKGIIHETTVPYSLEMNGKAERKNRTLTELVVAILLELGAAPSCWGEIIKTVNYVLNRIPKSNSKTSPYEVLKHKTPNLTYLITW
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| TrEMBL top hits | e value | %identity | Alignment |
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| A0A5D3DCJ1 Putative Polyprotein | 2.0e-93 | 91.58 | Show/hide |
Query: CSQAKITKTSHKSVTRVTEPLELIHSDLCEFDGSLTRNSKRYVLTFIDDCSDYTFIYLLKNKSDAYEMFKVFVTKIENQFNKRIKRLRSDRGTEYDSVAF
CSQAKITKTSHK VTRVT+PLELIHSDLCEFDG+LTRNSKRYV+TFIDDCSDYTFIYLLKNKSDAYEMFKVFVT+IENQFNKRIKRLRSDRGTEYDSVAF
Subjt: CSQAKITKTSHKSVTRVTEPLELIHSDLCEFDGSLTRNSKRYVLTFIDDCSDYTFIYLLKNKSDAYEMFKVFVTKIENQFNKRIKRLRSDRGTEYDSVAF
Query: NEFYSSKGIIHETTVPYSLEMNGKAERKNRTLTELVVAILLELGAAPSCWGEIIKTVNYVLNRIPKSNSKTSPYEVLKHKTPNLTYLITW
NEFY+SKGIIHETT PYS EMNGK ERKNRTLTEL VAILLE AAPS WGEIIKTVNYVLNRIPKSNSKTSPYEVLKHK PNL+YL TW
Subjt: NEFYSSKGIIHETTVPYSLEMNGKAERKNRTLTELVVAILLELGAAPSCWGEIIKTVNYVLNRIPKSNSKTSPYEVLKHKTPNLTYLITW
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| A0A7N2L531 Uncharacterized protein | 2.5e-59 | 63.16 | Show/hide |
Query: CSQAKITKTSHKSVTRVTEPLELIHSDLCEFDGSLTRNSKRYVLTFIDDCSDYTFIYLLKNKSDAYEMFKVFVTKIENQFNKRIKRLRSDRGTEYDSVAF
CSQAKITK HK+V R TE LELIHSDLCEF+G LTR RY++TFIDD S YT IYLLKNKSDA+E F+ F+ ++ENQF ++IKR+RSDRG EY+S AF
Subjt: CSQAKITKTSHKSVTRVTEPLELIHSDLCEFDGSLTRNSKRYVLTFIDDCSDYTFIYLLKNKSDAYEMFKVFVTKIENQFNKRIKRLRSDRGTEYDSVAF
Query: NEFYSSKGIIHETTVPYSLEMNGKAERKNRTLTELVVAILLELGAAPSCWGEIIKTVNYVLNRIPKSNSKTSPYEVLKHKTPNLTYLITW
N F S GIIHETT PYS NG AERKNRTL EL A+L+E GA WGE I T +VLNR+P S T+P+E+ K PNL YL W
Subjt: NEFYSSKGIIHETTVPYSLEMNGKAERKNRTLTELVVAILLELGAAPSCWGEIIKTVNYVLNRIPKSNSKTSPYEVLKHKTPNLTYLITW
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| A0A7N2R9F3 Uncharacterized protein | 2.5e-59 | 63.16 | Show/hide |
Query: CSQAKITKTSHKSVTRVTEPLELIHSDLCEFDGSLTRNSKRYVLTFIDDCSDYTFIYLLKNKSDAYEMFKVFVTKIENQFNKRIKRLRSDRGTEYDSVAF
CSQAKITK HKSV R TE LELIHSDLCEF+G LTR RY++TFIDD S YT IYLLKNKSDA+E F+ F+ ++ENQF ++IKR+RSDRG EY+S AF
Subjt: CSQAKITKTSHKSVTRVTEPLELIHSDLCEFDGSLTRNSKRYVLTFIDDCSDYTFIYLLKNKSDAYEMFKVFVTKIENQFNKRIKRLRSDRGTEYDSVAF
Query: NEFYSSKGIIHETTVPYSLEMNGKAERKNRTLTELVVAILLELGAAPSCWGEIIKTVNYVLNRIPKSNSKTSPYEVLKHKTPNLTYLITW
N F S GIIHETT PYS NG ERKNRTL EL A+L+E GA WGE I T +VLNR+P S T+P+E+ K PNL YL W
Subjt: NEFYSSKGIIHETTVPYSLEMNGKAERKNRTLTELVVAILLELGAAPSCWGEIIKTVNYVLNRIPKSNSKTSPYEVLKHKTPNLTYLITW
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| Q0KIN7 Polyprotein, putative | 9.0e-54 | 56.84 | Show/hide |
Query: CSQAKITKTSHKSVTRVTEPLELIHSDLCEFDGSLTRNSKRYVLTFIDDCSDYTFIYLLKNKSDAYEMFKVFVTKIENQFNKRIKRLRSDRGTEYDSVAF
CS+AKITK H V R T+ LEL+H+D+CE G LTR RY +TFIDD S +T++YL+KNKSDA+E FK ++ ++ENQF ++IKR+RSDRG EY+S F
Subjt: CSQAKITKTSHKSVTRVTEPLELIHSDLCEFDGSLTRNSKRYVLTFIDDCSDYTFIYLLKNKSDAYEMFKVFVTKIENQFNKRIKRLRSDRGTEYDSVAF
Query: NEFYSSKGIIHETTVPYSLEMNGKAERKNRTLTELVVAILLELGAAPSCWGEIIKTVNYVLNRIPKSNSKTSPYEVLKHKTPNLTYLITW
N F S GIIHETT PYS NG AERKNRTL EL A+L+E A + WGE I T YVLNR+P SK +P+E+ K P+L YL W
Subjt: NEFYSSKGIIHETTVPYSLEMNGKAERKNRTLTELVVAILLELGAAPSCWGEIIKTVNYVLNRIPKSNSKTSPYEVLKHKTPNLTYLITW
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| Q60D13 Putative gag and pol polyprotein, identical | 1.4e-51 | 55.79 | Show/hide |
Query: CSQAKITKTSHKSVTRVTEPLELIHSDLCEFDGSLTRNSKRYVLTFIDDCSDYTFIYLLKNKSDAYEMFKVFVTKIENQFNKRIKRLRSDRGTEYDSVAF
CS+AKITK H V R T LEL+H+D+CE G LTR R +TFIDD S +T++YL+KNKSDA+E FK ++ ++ENQF ++IKR+RSDRG EY+S F
Subjt: CSQAKITKTSHKSVTRVTEPLELIHSDLCEFDGSLTRNSKRYVLTFIDDCSDYTFIYLLKNKSDAYEMFKVFVTKIENQFNKRIKRLRSDRGTEYDSVAF
Query: NEFYSSKGIIHETTVPYSLEMNGKAERKNRTLTELVVAILLELGAAPSCWGEIIKTVNYVLNRIPKSNSKTSPYEVLKHKTPNLTYLITW
N F S GIIHETT PYS NG AERKNRTL EL A+L+E A + WGE I T YVLNR+P SK + +E+ K P+L YL W
Subjt: NEFYSSKGIIHETTVPYSLEMNGKAERKNRTLTELVVAILLELGAAPSCWGEIIKTVNYVLNRIPKSNSKTSPYEVLKHKTPNLTYLITW
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| SwissProt top hits | e value | %identity | Alignment |
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| P04146 Copia protein | 6.3e-28 | 36.7 | Show/hide |
Query: QAKITKTSHKSVTRVTEPLELIHSDLCEFDGSLTRNSKRYVLTFIDDCSDYTFIYLLKNKSDAYEMFKVFVTKIENQFNKRIKRLRSDRGTEYDSVAFNE
QA++ K T + PL ++HSD+C +T + K Y + F+D + Y YL+K KSD + MF+ FV K E FN ++ L D G EY S +
Subjt: QAKITKTSHKSVTRVTEPLELIHSDLCEFDGSLTRNSKRYVLTFIDDCSDYTFIYLLKNKSDAYEMFKVFVTKIENQFNKRIKRLRSDRGTEYDSVAFNE
Query: FYSSKGIIHETTVPYSLEMNGKAERKNRTLTELVVAILLELGAAPSCWGEIIKTVNYVLNRIPKS---NSKTSPYEVLKHKTPNLTYL
F KGI + TVP++ ++NG +ER RT+TE ++ S WGE + T Y++NRIP +S +PYE+ +K P L +L
Subjt: FYSSKGIIHETTVPYSLEMNGKAERKNRTLTELVVAILLELGAAPSCWGEIIKTVNYVLNRIPKS---NSKTSPYEVLKHKTPNLTYL
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 7.7e-26 | 41.38 | Show/hide |
Query: LELIHSDLCEFDGSLTRNSKRYVLTFIDDCSDYTFIYLLKNKSDAYEMFKVFVTKIENQFNKRIKRLRSDRGTEYDSVAFNEFYSSKGIIHETTVPYSLE
L+L++SD+C + +Y +TFIDD S ++Y+LK K +++F+ F +E + +++KRLRSD G EY S F E+ SS GI HE TVP + +
Subjt: LELIHSDLCEFDGSLTRNSKRYVLTFIDDCSDYTFIYLLKNKSDAYEMFKVFVTKIENQFNKRIKRLRSDRGTEYDSVAFNEFYSSKGIIHETTVPYSLE
Query: MNGKAERKNRTLTELVVAILLELGAAPSCWGEIIKTVNYVLNRIP
NG AER NRT+ E V ++L S WGE ++T Y++NR P
Subjt: MNGKAERKNRTLTELVVAILLELGAAPSCWGEIIKTVNYVLNRIP
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| Q12337 Transposon Ty2-GR1 Gag-Pol polyprotein | 5.3e-11 | 25.14 | Show/hide |
Query: CSQAKITKTSHKSVTRVT-----EPLELIHSDLCEFDGSLTRNSKRYVLTFIDDCSDYTFIYLL--KNKSDAYEMFKVFVTKIENQFNKRIKRLRSDRGT
C K TK H +R+ EP + +H+D+ L +++ Y ++F D+ + + ++Y L + + +F + I+NQFN R+ ++ DRG+
Subjt: CSQAKITKTSHKSVTRVT-----EPLELIHSDLCEFDGSLTRNSKRYVLTFIDDCSDYTFIYLL--KNKSDAYEMFKVFVTKIENQFNKRIKRLRSDRGT
Query: EYDSVAFNEFYSSKGIIHETTVPYSLEMNGKAERKNRTLTELVVAILLELGAAPSCWGEIIKTVNYVLNRIPKSNSKTS
EY + ++F++++GI T +G AER NRTL +L G W ++ + N + + S
Subjt: EYDSVAFNEFYSSKGIIHETTVPYSLEMNGKAERKNRTLTELVVAILLELGAAPSCWGEIIKTVNYVLNRIPKSNSKTS
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 4.8e-20 | 34.04 | Show/hide |
Query: CSQAKITKTS----HKSVTRVTEPLELIHSDLCEFDGSLTRNSKRYVLTFIDDCSDYTFIYLLKNKSDAYEMFKVFVTKIENQFNKRIKRLRSDRGTEYD
CS I K++ +S T PLE I+SD+ L+ ++ RY + F+D + YT++Y LK KS E F F +EN+F RI SD G E+
Subjt: CSQAKITKTS----HKSVTRVTEPLELIHSDLCEFDGSLTRNSKRYVLTFIDDCSDYTFIYLLKNKSDAYEMFKVFVTKIENQFNKRIKRLRSDRGTEYD
Query: SVAFNEFYSSKGIIHETTVPYSLEMNGKAERKNRTLTELVVAILLELGAAPSCWGEIIKTVNYVLNRIPKSNSK-TSPYEVLKHKTPN
VA E++S GI H T+ P++ E NG +ERK+R + E + +L + W Y++NR+P + SP++ L +PN
Subjt: SVAFNEFYSSKGIIHETTVPYSLEMNGKAERKNRTLTELVVAILLELGAAPSCWGEIIKTVNYVLNRIPKSNSK-TSPYEVLKHKTPN
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 8.2e-20 | 33.86 | Show/hide |
Query: CSQAKITKTSHK-----SVTRVTEPLELIHSDLCEFDGSLTRNSKRYVLTFIDDCSDYTFIYLLKNKSDAYEMFKVFVTKIENQFNKRIKRLRSDRGTEY
CS I K SHK S ++PLE I+SD+ L+ ++ RY + F+D + YT++Y LK KS + F +F + +EN+F RI L SD G E+
Subjt: CSQAKITKTSHK-----SVTRVTEPLELIHSDLCEFDGSLTRNSKRYVLTFIDDCSDYTFIYLLKNKSDAYEMFKVFVTKIENQFNKRIKRLRSDRGTEY
Query: DSVAFNEFYSSKGIIHETTVPYSLEMNGKAERKNRTLTELVVAILLELGAAPSCWGEIIKTVNYVLNRIPKSNSK-TSPYEVLKHKTPN
V ++ S GI H T+ P++ E NG +ERK+R + E+ + +L + W Y++NR+P + SP++ L + PN
Subjt: DSVAFNEFYSSKGIIHETTVPYSLEMNGKAERKNRTLTELVVAILLELGAAPSCWGEIIKTVNYVLNRIPKSNSK-TSPYEVLKHKTPN
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