; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc12g0318251 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc12g0318251
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationCMiso1.1chr12:3300598..3301428
RNA-Seq ExpressionCmc12g0318251
SyntenyCmc12g0318251
Gene Ontology termsNA
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032842.1 hypothetical protein E6C27_scaffold1987G00140 [Cucumis melo var. makuwa]1.5e-157100Show/hide
Query:  MDVKTTFLNGDLGEEIYMEQPEGFIVHDQESKVCKLDKSLYDLKQAPKQCHEKFDNLLMSKGFKVNESDKCIYYKIEGRLCIIICLYVDDMLIFGSNLHV
        MDVKTTFLNGDLGEEIYMEQPEGFIVHDQESKVCKLDKSLYDLKQAPKQCHEKFDNLLMSKGFKVNESDKCIYYKIEGRLCIIICLYVDDMLIFGSNLHV
Subjt:  MDVKTTFLNGDLGEEIYMEQPEGFIVHDQESKVCKLDKSLYDLKQAPKQCHEKFDNLLMSKGFKVNESDKCIYYKIEGRLCIIICLYVDDMLIFGSNLHV

Query:  INDVKSMLNVNFDMKDLGEADVILGIKITRFENGISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYAADCTRPDIA
        INDVKSMLNVNFDMKDLGEADVILGIKITRFENGISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYAADCTRPDIA
Subjt:  INDVKSMLNVNFDMKDLGEADVILGIKITRFENGISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYAADCTRPDIA

Query:  YAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNKFPAVLEGYNDADWNSRSDDSKATSGYIFNIAGEVVA
        YAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNKFPAVLEGYNDADWNSRSDDSKATSGYIFNIAGEVVA
Subjt:  YAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNKFPAVLEGYNDADWNSRSDDSKATSGYIFNIAGEVVA

KAA0058878.1 putative polyprotein [Cucumis melo var. makuwa]3.5e-13889.13Show/hide
Query:  MDVKTTFLNGDLGEEIYMEQPEGFIVHDQESKVCKLDKSLYDLKQAPKQCHEKFDNLLMSKGFKVNESDKCIYYKIEGRLCIIICLYVDDMLIFGSNLHV
        MDVKT FLNGDL EEIYMEQPE FIVH QE KVCKLDKSLY L+QAPKQ HEKFD LLMSKGFKVNESDKC+YYK +GRLCIIICLYVDDML F SNLHV
Subjt:  MDVKTTFLNGDLGEEIYMEQPEGFIVHDQESKVCKLDKSLYDLKQAPKQCHEKFDNLLMSKGFKVNESDKCIYYKIEGRLCIIICLYVDDMLIFGSNLHV

Query:  INDVKSMLNVNFDMKDLGEADVILGIKITRFENGISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYAADCTRPDIA
        INDVKSML+VNFDMKDLGEAD+ILGIKITR +NGISLDQS+YIEKILKKYNYFDSKPACTPYDSSVKLFKNTGD+VNQSEY SIIGSLRY ADCTRPDIA
Subjt:  INDVKSMLNVNFDMKDLGEADVILGIKITRFENGISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYAADCTRPDIA

Query:  YAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNKFPAVLEGYNDADWNSRSDDSKATSGYIFNIAGEVVA
        YAVGLLCRFTSRP LEHWNAIER+MRYLKK QNLGLHYNKF  VLEGYND DWNS SDDSKATSGYIFNIAG VVA
Subjt:  YAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNKFPAVLEGYNDADWNSRSDDSKATSGYIFNIAGEVVA

KAA0060459.1 hypothetical protein E6C27_scaffold22G002870 [Cucumis melo var. makuwa]2.3e-14292.03Show/hide
Query:  MDVKTTFLNGDLGEEIYMEQPEGFIVHDQESKVCKLDKSLYDLKQAPKQCHEKFDNLLMSKGFKVNESDKCIYYKIEGRLCIIICLYVDDMLIFGSNLHV
        MDVKT FLNGDL EEIYMEQPEGFIVH+QESKVCKLDKSLY LKQAPKQ HEKFDNLLMSKGFKVNESDKCIYYK EGRLCIIICLYVDDMLIFGSNLHV
Subjt:  MDVKTTFLNGDLGEEIYMEQPEGFIVHDQESKVCKLDKSLYDLKQAPKQCHEKFDNLLMSKGFKVNESDKCIYYKIEGRLCIIICLYVDDMLIFGSNLHV

Query:  INDVKSMLNVNFDMKDLGEADVILGIKITRFENGISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYAADCTRPDIA
        INDVKSML+VNFDMKDLGEADVILGIKITR ENGI LDQSHYIEK LKKYNYFDSKP CTPYDSSVKLFKNTGDSVNQ+EYASIIGSLRYA D TRP IA
Subjt:  INDVKSMLNVNFDMKDLGEADVILGIKITRFENGISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYAADCTRPDIA

Query:  YAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNKFPAVLEGYNDADWNSRSDDSKATSGYIFNIAGEVVA
        YAVGLLCRFTSRPSLEHWNAIERVMRYLKK QNLGLHYNKFP VLEGY+DADWNS  DDSKATSGYIFNIAG  VA
Subjt:  YAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNKFPAVLEGYNDADWNSRSDDSKATSGYIFNIAGEVVA

TYK00058.1 hypothetical protein E5676_scaffold596G00040 [Cucumis melo var. makuwa]2.3e-13788.77Show/hide
Query:  MDVKTTFLNGDLGEEIYMEQPEGFIVHDQESKVCKLDKSLYDLKQAPKQCHEKFDNLLMSKGFKVNESDKCIYYKIEGRLCIIICLYVDDMLIFGSNLHV
        MDVKT FLNGDL EEIYM+QPEGFIVH QE+KV KLDKS YDLKQAPKQ HEKF+NLLMSKGFKVNESD+CIYYK EGR+CIIICLYVDDMLIFGSNLH+
Subjt:  MDVKTTFLNGDLGEEIYMEQPEGFIVHDQESKVCKLDKSLYDLKQAPKQCHEKFDNLLMSKGFKVNESDKCIYYKIEGRLCIIICLYVDDMLIFGSNLHV

Query:  INDVKSMLNVNFDMKDLGEADVILGIKITRFENGISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYAADCTRPDIA
        INDVKSML+ NFDMKDLGEADVILGIKI R ENGISLDQSHYIEKILKKYNYF+SKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYAADCTRPDIA
Subjt:  INDVKSMLNVNFDMKDLGEADVILGIKITRFENGISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYAADCTRPDIA

Query:  YAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNKFPAVLEGYNDADWNSRSDDSKATSGYIFNIAGEVVA
        Y +GLLCRFTSR SLEHWNAIERVMRYLKK QNLGLHYNKF  VLEGY DADWNS SDDSKA SGYIF I  E VA
Subjt:  YAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNKFPAVLEGYNDADWNSRSDDSKATSGYIFNIAGEVVA

TYK06419.1 hypothetical protein E5676_scaffold163G001210 [Cucumis melo var. makuwa]6.4e-14090.22Show/hide
Query:  MDVKTTFLNGDLGEEIYMEQPEGFIVHDQESKVCKLDKSLYDLKQAPKQCHEKFDNLLMSKGFKVNESDKCIYYKIEGRLCIIICLYVDDMLIFGSNLHV
        MDVKT FLNGDL EEIYMEQ EGFIVH QESKVCKLDKSLY LKQAPKQ HEKFDNLL+SKGFKVNESDKCIYYK EGRLCIIICLYVDD+LIFGSNL+V
Subjt:  MDVKTTFLNGDLGEEIYMEQPEGFIVHDQESKVCKLDKSLYDLKQAPKQCHEKFDNLLMSKGFKVNESDKCIYYKIEGRLCIIICLYVDDMLIFGSNLHV

Query:  INDVKSMLNVNFDMKDLGEADVILGIKITRFENGISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYAADCTRPDIA
        INDVKSML+ NFDMK+L EADVILGIKITR +NGISLDQSHYIEKILKKYNYFDSKP CTPYDSSVKLF+NTGDSVNQSEYASIIGSLRYAADCTRPDIA
Subjt:  INDVKSMLNVNFDMKDLGEADVILGIKITRFENGISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYAADCTRPDIA

Query:  YAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNKFPAVLEGYNDADWNSRSDDSKATSGYIFNIAGEVVA
        YAVGLLCRFTSRPSLEHWN IER++RYLKK QNLGLHYNKFPAVLEGY DADWNS SD+SKATSGYIFNIAG  VA
Subjt:  YAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNKFPAVLEGYNDADWNSRSDDSKATSGYIFNIAGEVVA

TrEMBL top hitse value%identityAlignment
A0A5A7SNZ1 Reverse transcriptase Ty1/copia-type domain-containing protein7.3e-158100Show/hide
Query:  MDVKTTFLNGDLGEEIYMEQPEGFIVHDQESKVCKLDKSLYDLKQAPKQCHEKFDNLLMSKGFKVNESDKCIYYKIEGRLCIIICLYVDDMLIFGSNLHV
        MDVKTTFLNGDLGEEIYMEQPEGFIVHDQESKVCKLDKSLYDLKQAPKQCHEKFDNLLMSKGFKVNESDKCIYYKIEGRLCIIICLYVDDMLIFGSNLHV
Subjt:  MDVKTTFLNGDLGEEIYMEQPEGFIVHDQESKVCKLDKSLYDLKQAPKQCHEKFDNLLMSKGFKVNESDKCIYYKIEGRLCIIICLYVDDMLIFGSNLHV

Query:  INDVKSMLNVNFDMKDLGEADVILGIKITRFENGISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYAADCTRPDIA
        INDVKSMLNVNFDMKDLGEADVILGIKITRFENGISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYAADCTRPDIA
Subjt:  INDVKSMLNVNFDMKDLGEADVILGIKITRFENGISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYAADCTRPDIA

Query:  YAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNKFPAVLEGYNDADWNSRSDDSKATSGYIFNIAGEVVA
        YAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNKFPAVLEGYNDADWNSRSDDSKATSGYIFNIAGEVVA
Subjt:  YAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNKFPAVLEGYNDADWNSRSDDSKATSGYIFNIAGEVVA

A0A5D3BLQ7 Reverse transcriptase Ty1/copia-type domain-containing protein1.1e-13788.77Show/hide
Query:  MDVKTTFLNGDLGEEIYMEQPEGFIVHDQESKVCKLDKSLYDLKQAPKQCHEKFDNLLMSKGFKVNESDKCIYYKIEGRLCIIICLYVDDMLIFGSNLHV
        MDVKT FLNGDL EEIYM+QPEGFIVH QE+KV KLDKS YDLKQAPKQ HEKF+NLLMSKGFKVNESD+CIYYK EGR+CIIICLYVDDMLIFGSNLH+
Subjt:  MDVKTTFLNGDLGEEIYMEQPEGFIVHDQESKVCKLDKSLYDLKQAPKQCHEKFDNLLMSKGFKVNESDKCIYYKIEGRLCIIICLYVDDMLIFGSNLHV

Query:  INDVKSMLNVNFDMKDLGEADVILGIKITRFENGISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYAADCTRPDIA
        INDVKSML+ NFDMKDLGEADVILGIKI R ENGISLDQSHYIEKILKKYNYF+SKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYAADCTRPDIA
Subjt:  INDVKSMLNVNFDMKDLGEADVILGIKITRFENGISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYAADCTRPDIA

Query:  YAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNKFPAVLEGYNDADWNSRSDDSKATSGYIFNIAGEVVA
        Y +GLLCRFTSR SLEHWNAIERVMRYLKK QNLGLHYNKF  VLEGY DADWNS SDDSKA SGYIF I  E VA
Subjt:  YAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNKFPAVLEGYNDADWNSRSDDSKATSGYIFNIAGEVVA

A0A5D3C7T6 Reverse transcriptase Ty1/copia-type domain-containing protein3.1e-14090.22Show/hide
Query:  MDVKTTFLNGDLGEEIYMEQPEGFIVHDQESKVCKLDKSLYDLKQAPKQCHEKFDNLLMSKGFKVNESDKCIYYKIEGRLCIIICLYVDDMLIFGSNLHV
        MDVKT FLNGDL EEIYMEQ EGFIVH QESKVCKLDKSLY LKQAPKQ HEKFDNLL+SKGFKVNESDKCIYYK EGRLCIIICLYVDD+LIFGSNL+V
Subjt:  MDVKTTFLNGDLGEEIYMEQPEGFIVHDQESKVCKLDKSLYDLKQAPKQCHEKFDNLLMSKGFKVNESDKCIYYKIEGRLCIIICLYVDDMLIFGSNLHV

Query:  INDVKSMLNVNFDMKDLGEADVILGIKITRFENGISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYAADCTRPDIA
        INDVKSML+ NFDMK+L EADVILGIKITR +NGISLDQSHYIEKILKKYNYFDSKP CTPYDSSVKLF+NTGDSVNQSEYASIIGSLRYAADCTRPDIA
Subjt:  INDVKSMLNVNFDMKDLGEADVILGIKITRFENGISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYAADCTRPDIA

Query:  YAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNKFPAVLEGYNDADWNSRSDDSKATSGYIFNIAGEVVA
        YAVGLLCRFTSRPSLEHWN IER++RYLKK QNLGLHYNKFPAVLEGY DADWNS SD+SKATSGYIFNIAG  VA
Subjt:  YAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNKFPAVLEGYNDADWNSRSDDSKATSGYIFNIAGEVVA

A0A5D3D4T4 Reverse transcriptase Ty1/copia-type domain-containing protein1.1e-14292.03Show/hide
Query:  MDVKTTFLNGDLGEEIYMEQPEGFIVHDQESKVCKLDKSLYDLKQAPKQCHEKFDNLLMSKGFKVNESDKCIYYKIEGRLCIIICLYVDDMLIFGSNLHV
        MDVKT FLNGDL EEIYMEQPEGFIVH+QESKVCKLDKSLY LKQAPKQ HEKFDNLLMSKGFKVNESDKCIYYK EGRLCIIICLYVDDMLIFGSNLHV
Subjt:  MDVKTTFLNGDLGEEIYMEQPEGFIVHDQESKVCKLDKSLYDLKQAPKQCHEKFDNLLMSKGFKVNESDKCIYYKIEGRLCIIICLYVDDMLIFGSNLHV

Query:  INDVKSMLNVNFDMKDLGEADVILGIKITRFENGISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYAADCTRPDIA
        INDVKSML+VNFDMKDLGEADVILGIKITR ENGI LDQSHYIEK LKKYNYFDSKP CTPYDSSVKLFKNTGDSVNQ+EYASIIGSLRYA D TRP IA
Subjt:  INDVKSMLNVNFDMKDLGEADVILGIKITRFENGISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYAADCTRPDIA

Query:  YAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNKFPAVLEGYNDADWNSRSDDSKATSGYIFNIAGEVVA
        YAVGLLCRFTSRPSLEHWNAIERVMRYLKK QNLGLHYNKFP VLEGY+DADWNS  DDSKATSGYIFNIAG  VA
Subjt:  YAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNKFPAVLEGYNDADWNSRSDDSKATSGYIFNIAGEVVA

A0A5D3DJH9 Putative polyprotein1.7e-13889.13Show/hide
Query:  MDVKTTFLNGDLGEEIYMEQPEGFIVHDQESKVCKLDKSLYDLKQAPKQCHEKFDNLLMSKGFKVNESDKCIYYKIEGRLCIIICLYVDDMLIFGSNLHV
        MDVKT FLNGDL EEIYMEQPE FIVH QE KVCKLDKSLY L+QAPKQ HEKFD LLMSKGFKVNESDKC+YYK +GRLCIIICLYVDDML F SNLHV
Subjt:  MDVKTTFLNGDLGEEIYMEQPEGFIVHDQESKVCKLDKSLYDLKQAPKQCHEKFDNLLMSKGFKVNESDKCIYYKIEGRLCIIICLYVDDMLIFGSNLHV

Query:  INDVKSMLNVNFDMKDLGEADVILGIKITRFENGISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYAADCTRPDIA
        INDVKSML+VNFDMKDLGEAD+ILGIKITR +NGISLDQS+YIEKILKKYNYFDSKPACTPYDSSVKLFKNTGD+VNQSEY SIIGSLRY ADCTRPDIA
Subjt:  INDVKSMLNVNFDMKDLGEADVILGIKITRFENGISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYAADCTRPDIA

Query:  YAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNKFPAVLEGYNDADWNSRSDDSKATSGYIFNIAGEVVA
        YAVGLLCRFTSRP LEHWNAIER+MRYLKK QNLGLHYNKF  VLEGYND DWNS SDDSKATSGYIFNIAG VVA
Subjt:  YAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNKFPAVLEGYNDADWNSRSDDSKATSGYIFNIAGEVVA

SwissProt top hitse value%identityAlignment
P04146 Copia protein8.9e-4438.55Show/hide
Query:  MDVKTTFLNGDLGEEIYMEQPEGFIVHDQESKVCKLDKSLYDLKQAPKQCHEKFDNLLMSKGFKVNESDKCIYYKIEGRL--CIIICLYVDDMLIFGSNL
        MDVKT FLNG L EEIYM  P+G  +      VCKL+K++Y LKQA +   E F+  L    F  +  D+CIY   +G +   I + LYVDD++I   ++
Subjt:  MDVKTTFLNGDLGEEIYMEQPEGFIVHDQESKVCKLDKSLYDLKQAPKQCHEKFDNLLMSKGFKVNESDKCIYYKIEGRL--CIIICLYVDDMLIFGSNL

Query:  HVINDVKSMLNVNFDMKDLGEADVILGIKITRFENGISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYAADCTRPD
          +N+ K  L   F M DL E    +GI+I   E+ I L QS Y++KIL K+N  +     TP  S +       D    +   S+IG L Y   CTRPD
Subjt:  HVINDVKSMLNVNFDMKDLGEADVILGIKITRFENGISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYAADCTRPD

Query:  IAYAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNK---FPAVLEGYNDADWNSRSDDSKATSGYIFNI
        +  AV +L R++S+ + E W  ++RV+RYLK   ++ L + K   F   + GY D+DW     D K+T+GY+F +
Subjt:  IAYAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNK---FPAVLEGYNDADWNSRSDDSKATSGYIFNI

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.8e-6044.06Show/hide
Query:  MDVKTTFLNGDLGEEIYMEQPEGFIVHDQESKVCKLDKSLYDLKQAPKQCHEKFDNLLMSKGFKVNESDKCIYYK-IEGRLCIIICLYVDDMLIFGSNLH
        +DVKT FL+GDL EEIYMEQPEGF V  ++  VCKL+KSLY LKQAP+Q + KFD+ + S+ +    SD C+Y+K       II+ LYVDDMLI G +  
Subjt:  MDVKTTFLNGDLGEEIYMEQPEGFIVHDQESKVCKLDKSLYDLKQAPKQCHEKFDNLLMSKGFKVNESDKCIYYK-IEGRLCIIICLYVDDMLIFGSNLH

Query:  VINDVKSMLNVNFDMKDLGEADVILGIKITRFENG--ISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQSE-------YASIIGSLRY
        +I  +K  L+ +FDMKDLG A  ILG+KI R      + L Q  YIE++L+++N  ++KP  TP    +KL K    +  + +       Y+S +GSL Y
Subjt:  VINDVKSMLNVNFDMKDLGEADVILGIKITRFENG--ISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQSE-------YASIIGSLRY

Query:  AADCTRPDIAYAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNKFPAVLEGYNDADWNSRSDDSKATSGYIFNIAGEVVA
        A  CTRPDIA+AVG++ RF   P  EHW A++ ++RYL+      L +     +L+GY DAD     D+ K+++GY+F  +G  ++
Subjt:  AADCTRPDIAYAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNKFPAVLEGYNDADWNSRSDDSKATSGYIFNIAGEVVA

P25600 Putative transposon Ty5-1 protein YCL074W4.4e-3535.25Show/hide
Query:  MDVKTTFLNGDLGEEIYMEQPEGFIVHDQESKVCKLDKSLYDLKQAPKQCHEKFDNLLMSKGFKVNESDKCIYYKIEGRLCIIICLYVDDMLIFGSNLHV
        MDV T FLN  + E IY++QP GF+       V +L   +Y LKQAP   +E  +N L   GF  +E +  +Y++      I I +YVDD+L+   +  +
Subjt:  MDVKTTFLNGDLGEEIYMEQPEGFIVHDQESKVCKLDKSLYDLKQAPKQCHEKFDNLLMSKGFKVNESDKCIYYKIEGRLCIIICLYVDDMLIFGSNLHV

Query:  INDVKSMLNVNFDMKDLGEADVILGIKITRFENG-ISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQ-SEYASIIGSLRYAADCTRPD
         + VK  L   + MKDLG+ D  LG+ I +  NG I+L    YI K   +      K   TP  +S  LF+ T   +   + Y SI+G L + A+  RPD
Subjt:  INDVKSMLNVNFDMKDLGEADVILGIKITRFENG-ISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQ-SEYASIIGSLRYAADCTRPD

Query:  IAYAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNK-FPAVLEGYNDADWNSRSDDSKATSGYIFNIAGEVV
        I+Y V LL RF   P   H  +  RV+RYL   +++ L Y       L  Y DA   +  D   +T GY+  +AG  V
Subjt:  IAYAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNK-FPAVLEGYNDADWNSRSDDSKATSGYIFNIAGEVV

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE15.6e-4639.03Show/hide
Query:  MDVKTTFLNGDLGEEIYMEQPEGFIVHDQESKVCKLDKSLYDLKQAPKQCHEKFDNLLMSKGFKVNESDKCIYYKIEGRLCIIICLYVDDMLIFGSNLHV
        +DV   FL G L +++YM QP GFI  D+ + VCKL K+LY LKQAP+  + +  N L++ GF  + SD  ++    G+  + + +YVDD+LI G++  +
Subjt:  MDVKTTFLNGDLGEEIYMEQPEGFIVHDQESKVCKLDKSLYDLKQAPKQCHEKFDNLLMSKGFKVNESDKCIYYKIEGRLCIIICLYVDDMLIFGSNLHV

Query:  INDVKSMLNVNFDMKDLGEADVILGIKITRFENGISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSV-NQSEYASIIGSLRYAADCTRPDI
        +++    L+  F +KD  E    LGI+  R   G+ L Q  YI  +L + N   +KP  TP   S KL   +G  + + +EY  I+GSL+Y A  TRPDI
Subjt:  INDVKSMLNVNFDMKDLGEADVILGIKITRFENGISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSV-NQSEYASIIGSLRYAADCTRPDI

Query:  AYAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNKFPAV-LEGYNDADWNSRSDDSKATSGYI
        +YAV  L +F   P+ EH  A++R++RYL    N G+   K   + L  Y+DADW    DD  +T+GYI
Subjt:  AYAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNKFPAV-LEGYNDADWNSRSDDSKATSGYI

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE22.8e-4537.17Show/hide
Query:  MDVKTTFLNGDLGEEIYMEQPEGFIVHDQESKVCKLDKSLYDLKQAPKQCHEKFDNLLMSKGFKVNESDKCIYYKIEGRLCIIICLYVDDMLIFGSNLHV
        +DV   FL G L +E+YM QP GF+  D+   VC+L K++Y LKQAP+  + +    L++ GF  + SD  ++    GR  I + +YVDD+LI G++  +
Subjt:  MDVKTTFLNGDLGEEIYMEQPEGFIVHDQESKVCKLDKSLYDLKQAPKQCHEKFDNLLMSKGFKVNESDKCIYYKIEGRLCIIICLYVDDMLIFGSNLHV

Query:  INDVKSMLNVNFDMKDLGEADVILGIKITRFENGISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSV-NQSEYASIIGSLRYAADCTRPDI
        +      L+  F +K+  +    LGI+  R   G+ L Q  Y   +L + N   +KP  TP  +S KL  ++G  + + +EY  I+GSL+Y A  TRPD+
Subjt:  INDVKSMLNVNFDMKDLGEADVILGIKITRFENGISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSV-NQSEYASIIGSLRYAADCTRPDI

Query:  AYAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNKFPAV-LEGYNDADWNSRSDDSKATSGYI
        +YAV  L ++   P+ +HWNA++RV+RYL    + G+   K   + L  Y+DADW   +DD  +T+GYI
Subjt:  AYAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNKFPAV-LEGYNDADWNSRSDDSKATSGYI

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 89.5e-4134.4Show/hide
Query:  MDVKTTFLNGDLGEEIYMEQPEGFIVHDQES----KVCKLDKSLYDLKQAPKQCHEKFDNLLMSKGFKVNESDKCIYYKIEGRLCIIICLYVDDMLIFGS
        +D+   FLNGDL EEIYM+ P G+     +S     VC L KS+Y LKQA +Q   KF   L+  GF  + SD   + KI   L + + +YVDD++I  +
Subjt:  MDVKTTFLNGDLGEEIYMEQPEGFIVHDQES----KVCKLDKSLYDLKQAPKQCHEKFDNLLMSKGFKVNESDKCIYYKIEGRLCIIICLYVDDMLIFGS

Query:  NLHVINDVKSMLNVNFDMKDLGEADVILGIKITRFENGISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNT-GDSVNQSEYASIIGSLRYAADCT
        N   ++++KS L   F ++DLG     LG++I R   GI++ Q  Y   +L +      KP+  P D SV    ++ GD V+   Y  +IG L Y    T
Subjt:  NLHVINDVKSMLNVNFDMKDLGEADVILGIKITRFENGISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNT-GDSVNQSEYASIIGSLRYAADCT

Query:  RPDIAYAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNKFPAV-LEGYNDADWNSRSDDSKATSGYIFNIAGEVVA
        R DI++AV  L +F+  P L H  A+ +++ Y+K     GL Y+    + L+ ++DA + S  D  ++T+GY   +   +++
Subjt:  RPDIAYAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNKFPAV-LEGYNDADWNSRSDDSKATSGYIFNIAGEVVA

ATMG00240.1 Gag-Pol-related retrotransposon family protein3.8e-0531.51Show/hide
Query:  TRPDIAYAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNKFPAV-LEGYNDADWNSRSDDSKATSGY
        TRPD+ +AV  L +F+S        A+ +V+ Y+K     GL Y+    + L+ + D+DW S  D  ++ +G+
Subjt:  TRPDIAYAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNKFPAV-LEGYNDADWNSRSDDSKATSGY

ATMG00810.1 DNA/RNA polymerases superfamily protein1.9e-2534.24Show/hide
Query:  ICLYVDDMLIFGSNLHVINDVKSMLNVNFDMKDLGEADVILGIKITRFENGISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQSEYAS
        + LYVDD+L+ GS+  ++N +   L+  F MKDLG     LGI+I    +G+ L Q+ Y E+IL      D KP  TP    +    +T    + S++ S
Subjt:  ICLYVDDMLIFGSNLHVINDVKSMLNVNFDMKDLGEADVILGIKITRFENGISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQSEYAS

Query:  IIGSLRYAADCTRPDIAYAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNKFPAV-LEGYNDADWNSRSDDSKATSGY
        I+G+L+Y    TRPDI+YAV ++C+    P+L  ++ ++RV+RY+K     GL+ +K   + ++ + D+DW   +   ++T+G+
Subjt:  IIGSLRYAADCTRPDIAYAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNKFPAV-LEGYNDADWNSRSDDSKATSGY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGTTAAAACAACTTTCCTAAATGGTGATTTAGGAGAAGAGATTTACATGGAACAACCTGAAGGTTTCATAGTTCACGACCAAGAATCCAAAGTTTGCAAACTAGA
TAAATCCCTCTATGACCTAAAACAAGCTCCCAAGCAATGTCACGAAAAGTTTGACAACTTACTCATGTCAAAAGGATTCAAAGTAAATGAAAGTGACAAATGTATCTACT
ATAAGATTGAAGGTAGGCTATGTATTATCATATGCCTATACGTAGATGACATGTTAATCTTTGGATCAAACTTGCACGTCATAAATGATGTAAAATCTATGTTGAATGTA
AATTTTGACATGAAAGACCTAGGTGAAGCTGATGTAATCTTAGGCATCAAAATTACAAGATTTGAAAATGGAATTTCTTTAGATCAATCTCATTACATAGAAAAGATTCT
AAAGAAGTACAACTACTTCGATAGTAAACCAGCTTGTACACCTTATGACTCTAGTGTGAAATTATTCAAGAATACTGGTGACAGTGTTAACCAATCCGAGTACGCTAGTA
TCATAGGTAGTTTGAGGTATGCTGCTGATTGCACTAGACCAGACATAGCTTACGCCGTAGGATTACTATGTAGGTTTACCAGCAGACCCAGTCTAGAACATTGGAATGCA
ATAGAGAGAGTAATGAGATACCTTAAGAAAATCCAAAACCTAGGATTACATTATAACAAGTTTCCCGCTGTACTTGAAGGTTACAACGATGCTGATTGGAACTCCCGCTC
AGATGACTCAAAGGCTACAAGTGGCTATATTTTTAATATAGCAGGAGAAGTTGTGGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGTTAAAACAACTTTCCTAAATGGTGATTTAGGAGAAGAGATTTACATGGAACAACCTGAAGGTTTCATAGTTCACGACCAAGAATCCAAAGTTTGCAAACTAGA
TAAATCCCTCTATGACCTAAAACAAGCTCCCAAGCAATGTCACGAAAAGTTTGACAACTTACTCATGTCAAAAGGATTCAAAGTAAATGAAAGTGACAAATGTATCTACT
ATAAGATTGAAGGTAGGCTATGTATTATCATATGCCTATACGTAGATGACATGTTAATCTTTGGATCAAACTTGCACGTCATAAATGATGTAAAATCTATGTTGAATGTA
AATTTTGACATGAAAGACCTAGGTGAAGCTGATGTAATCTTAGGCATCAAAATTACAAGATTTGAAAATGGAATTTCTTTAGATCAATCTCATTACATAGAAAAGATTCT
AAAGAAGTACAACTACTTCGATAGTAAACCAGCTTGTACACCTTATGACTCTAGTGTGAAATTATTCAAGAATACTGGTGACAGTGTTAACCAATCCGAGTACGCTAGTA
TCATAGGTAGTTTGAGGTATGCTGCTGATTGCACTAGACCAGACATAGCTTACGCCGTAGGATTACTATGTAGGTTTACCAGCAGACCCAGTCTAGAACATTGGAATGCA
ATAGAGAGAGTAATGAGATACCTTAAGAAAATCCAAAACCTAGGATTACATTATAACAAGTTTCCCGCTGTACTTGAAGGTTACAACGATGCTGATTGGAACTCCCGCTC
AGATGACTCAAAGGCTACAAGTGGCTATATTTTTAATATAGCAGGAGAAGTTGTGGCTTGA
Protein sequenceShow/hide protein sequence
MDVKTTFLNGDLGEEIYMEQPEGFIVHDQESKVCKLDKSLYDLKQAPKQCHEKFDNLLMSKGFKVNESDKCIYYKIEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLNV
NFDMKDLGEADVILGIKITRFENGISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYAADCTRPDIAYAVGLLCRFTSRPSLEHWNA
IERVMRYLKKIQNLGLHYNKFPAVLEGYNDADWNSRSDDSKATSGYIFNIAGEVVA