CuGenDBv2

Gene ID	Cmc12g0318281
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr12:3318856..3319344
RNA-Seq Expression	Cmc12g0318281
Synteny	Cmc12g0318281
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0032541.1 pol protein [Cucumis melo var. makuwa]

7.7e-85

95.6

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Query:  MDFITGLSRTLKGYTVIWVVVDRLTKLAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTER
        MDFITGL +TLKGYTVIWVVVDRLTK AHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFST FHPQTDGQTER
Subjt:  MDFITGLSRTLKGYTVIWVVVDRLTKLAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTER

Query:  LNQVLEDMLRAYVLEFLGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWG
        LNQ+LEDMLRA VLEF GSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWG
Subjt:  LNQVLEDMLRAYVLEFLGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWG

KAA0032838.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

3.6e-90

100

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Query:  MDFITGLSRTLKGYTVIWVVVDRLTKLAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTER
        MDFITGLSRTLKGYTVIWVVVDRLTKLAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTER
Subjt:  MDFITGLSRTLKGYTVIWVVVDRLTKLAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTER

Query:  LNQVLEDMLRAYVLEFLGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGRG
        LNQVLEDMLRAYVLEFLGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGRG
Subjt:  LNQVLEDMLRAYVLEFLGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGRG

KAA0040542.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

7.7e-85

95.6

Show/hide

Query:  MDFITGLSRTLKGYTVIWVVVDRLTKLAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTER
        MDFITGL +TLKGYTVIWVVVDRLTK AHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFST FHPQTDGQTER
Subjt:  MDFITGLSRTLKGYTVIWVVVDRLTKLAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTER

Query:  LNQVLEDMLRAYVLEFLGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWG
        LNQ+LEDMLRA VLEF GSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWG
Subjt:  LNQVLEDMLRAYVLEFLGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWG

KAA0063083.1 pol protein [Cucumis melo var. makuwa]

7.7e-85

95.6

Show/hide

Query:  MDFITGLSRTLKGYTVIWVVVDRLTKLAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTER
        MDFITGL +TLKGYTVIWVVVDRLTK AHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFST FHPQTDGQTER
Subjt:  MDFITGLSRTLKGYTVIWVVVDRLTKLAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTER

Query:  LNQVLEDMLRAYVLEFLGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWG
        LNQ+LEDMLRA VLEF GSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWG
Subjt:  LNQVLEDMLRAYVLEFLGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWG

TYK21202.1 pol protein [Cucumis melo var. makuwa]

3.6e-90

100

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Query:  MDFITGLSRTLKGYTVIWVVVDRLTKLAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTER
        MDFITGLSRTLKGYTVIWVVVDRLTKLAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTER
Subjt:  MDFITGLSRTLKGYTVIWVVVDRLTKLAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTER

Query:  LNQVLEDMLRAYVLEFLGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGRG
        LNQVLEDMLRAYVLEFLGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGRG
Subjt:  LNQVLEDMLRAYVLEFLGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGRG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SQL8 Ty3-gypsy retrotransposon protein

1.7e-90

100

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Query:  MDFITGLSRTLKGYTVIWVVVDRLTKLAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTER
        MDFITGLSRTLKGYTVIWVVVDRLTKLAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTER
Subjt:  MDFITGLSRTLKGYTVIWVVVDRLTKLAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTER

Query:  LNQVLEDMLRAYVLEFLGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGRG
        LNQVLEDMLRAYVLEFLGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGRG
Subjt:  LNQVLEDMLRAYVLEFLGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGRG

A0A5A7SSL3 Reverse transcriptase

3.7e-85

95.6

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Query:  MDFITGLSRTLKGYTVIWVVVDRLTKLAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTER
        MDFITGL +TLKGYTVIWVVVDRLTK AHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFST FHPQTDGQTER
Subjt:  MDFITGLSRTLKGYTVIWVVVDRLTKLAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTER

Query:  LNQVLEDMLRAYVLEFLGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWG
        LNQ+LEDMLRA VLEF GSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWG
Subjt:  LNQVLEDMLRAYVLEFLGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWG

A0A5A7TAT0 DNA/RNA polymerases superfamily protein

3.7e-85

95.6

Show/hide

Query:  MDFITGLSRTLKGYTVIWVVVDRLTKLAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTER
        MDFITGL +TLKGYTVIWVVVDRLTK AHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFST FHPQTDGQTER
Subjt:  MDFITGLSRTLKGYTVIWVVVDRLTKLAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTER

Query:  LNQVLEDMLRAYVLEFLGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWG
        LNQ+LEDMLRA VLEF GSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWG
Subjt:  LNQVLEDMLRAYVLEFLGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWG

A0A5A7V4U5 Pol protein

3.7e-85

95.6

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Query:  MDFITGLSRTLKGYTVIWVVVDRLTKLAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTER
        MDFITGL +TLKGYTVIWVVVDRLTK AHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFST FHPQTDGQTER
Subjt:  MDFITGLSRTLKGYTVIWVVVDRLTKLAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTER

Query:  LNQVLEDMLRAYVLEFLGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWG
        LNQ+LEDMLRA VLEF GSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWG
Subjt:  LNQVLEDMLRAYVLEFLGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWG

A0A5D3DCA0 Pol protein

1.7e-90

100

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Query:  MDFITGLSRTLKGYTVIWVVVDRLTKLAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTER
        MDFITGLSRTLKGYTVIWVVVDRLTKLAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTER
Subjt:  MDFITGLSRTLKGYTVIWVVVDRLTKLAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTER

Query:  LNQVLEDMLRAYVLEFLGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGRG
        LNQVLEDMLRAYVLEFLGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGRG
Subjt:  LNQVLEDMLRAYVLEFLGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGRG

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

2.1e-24

37.84

Show/hide

Query:  MDFITGLSRTLKGYTVIWVVVDRLTKLAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTER
        MDFIT L  +  GY  ++VVVDR +K+A  VP   + TA +  +++   ++   G P  II+D D  FTS+ WK         + FS  + PQTDGQTER
Subjt:  MDFITGLSRTLKGYTVIWVVVDRLTKLAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTER

Query:  LNQVLEDMLRAYVLEFLGSWDSHLHLMEFAYNNSYQATIGMAPFEALY
         NQ +E +LR        +W  H+ L++ +YNN+  +   M PFE ++
Subjt:  LNQVLEDMLRAYVLEFLGSWDSHLHLMEFAYNNSYQATIGMAPFEALY

P0CT41 Transposon Tf2-12 polyprotein

2.1e-24

37.84

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Query:  MDFITGLSRTLKGYTVIWVVVDRLTKLAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTER
        MDFIT L  +  GY  ++VVVDR +K+A  VP   + TA +  +++   ++   G P  II+D D  FTS+ WK         + FS  + PQTDGQTER
Subjt:  MDFITGLSRTLKGYTVIWVVVDRLTKLAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTER

Query:  LNQVLEDMLRAYVLEFLGSWDSHLHLMEFAYNNSYQATIGMAPFEALY
         NQ +E +LR        +W  H+ L++ +YNN+  +   M PFE ++
Subjt:  LNQVLEDMLRAYVLEFLGSWDSHLHLMEFAYNNSYQATIGMAPFEALY

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

1.3e-26

41.29

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Query:  MDFITGLSRTLKGYTVIWVVVDRLTKLAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTER
        MDF+TGL  T     +I VVVDR +K AHF+  + T  A++   L    I   HG P +I SDRD R T+  ++ L   LG +   S+  HPQTDGQ+ER
Subjt:  MDFITGLSRTLKGYTVIWVVVDRLTKLAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTER

Query:  LNQVLEDMLRAYVLEFLGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSP
          Q L  +LRAYV   + +W  +L  +EF YN++   T+G +PFE   G    +P
Subjt:  LNQVLEDMLRAYVLEFLGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSP

Q99315 Transposon Ty3-G Gag-Pol polyprotein

3.8e-26

40.65

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Query:  MDFITGLSRTLKGYTVIWVVVDRLTKLAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTER
        MDF+TGL  T     +I VVVDR +K AHF+  + T  A++   L    I   HG P +I SDRD R T+  ++ L   LG +   S+  HPQTDGQ+ER
Subjt:  MDFITGLSRTLKGYTVIWVVVDRLTKLAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTER

Query:  LNQVLEDMLRAYVLEFLGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSP
          Q L  +LRAY    + +W  +L  +EF YN++   T+G +PFE   G    +P
Subjt:  LNQVLEDMLRAYVLEFLGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSP

Q9UR07 Transposon Tf2-11 polyprotein

2.1e-24

37.84

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Query:  MDFITGLSRTLKGYTVIWVVVDRLTKLAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTER
        MDFIT L  +  GY  ++VVVDR +K+A  VP   + TA +  +++   ++   G P  II+D D  FTS+ WK         + FS  + PQTDGQTER
Subjt:  MDFITGLSRTLKGYTVIWVVVDRLTKLAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTER

Query:  LNQVLEDMLRAYVLEFLGSWDSHLHLMEFAYNNSYQATIGMAPFEALY
         NQ +E +LR        +W  H+ L++ +YNN+  +   M PFE ++
Subjt:  LNQVLEDMLRAYVLEFLGSWDSHLHLMEFAYNNSYQATIGMAPFEALY

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGACTTCATTACAGGACTGTCCAGGACTCTAAAGGGCTATACAGTGATCTGGGTTGTCGTCGACAGACTCACGAAGTTAGCCCACTTTGTGCCAGGGAAATCCACTTA
CACTGCCAGTAAGTGGGGGCAATTGTATATGACGGAGATAGTGAGACTACATGGAGTACCCGTATCCATCATTTCAGATAGAGATGCTCGTTTCACATCGAAGTTCTGGA
AAGGACTTCAACTAGCCTTGGGCACGAGGCTAGACTTCAGTACAACCTTTCATCCTCAGACTGATGGTCAAACAGAGAGGTTGAACCAGGTTTTGGAAGATATGCTGCGA
GCCTATGTTCTGGAGTTCTTAGGGAGTTGGGACTCTCACTTGCACTTAATGGAATTCGCCTATAATAACAGCTACCAGGCTACCATCGGCATGGCACCATTTGAGGCTCT
GTATGGTAAGTGTTGTAGATCCCCCGTCTGCTGGGGACGAGGTTGGTGA

mRNA sequence

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Protein sequence

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MDFITGLSRTLKGYTVIWVVVDRLTKLAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTERLNQVLEDMLR
AYVLEFLGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGRGW

Cmc12g0318281 (gene) of Melon (Charmono) v1.1 genome