; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc12g0318341 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc12g0318341
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag-pol polyprotein
Genome locationCMiso1.1chr12:3425844..3426311
RNA-Seq ExpressionCmc12g0318341
SyntenyCmc12g0318341
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036856.1 gag-pol polyprotein [Cucumis melo var. makuwa]3.7e-6075.48Show/hide
Query:  MIRSLLYQIVSQPDIAYVVGICARFQSDPRISHLEAVKRILKYVHGTSDFGILYSYDTTSILVGYCNVDWADSSDDRKSTSRGCFSLGNNFISWLSKKQN
        MI SLLY   S+PDIAYVVGICAR+QSDPR SHL AVKR++KYVHGT+DFGILYSYDT+  LVGYC  DWA S  DRK TS GCF LGNN +SW SKKQN
Subjt:  MIRSLLYQIVSQPDIAYVVGICARFQSDPRISHLEAVKRILKYVHGTSDFGILYSYDTTSILVGYCNVDWADSSDDRKSTSRGCFSLGNNFISWLSKKQN

Query:  CVSLFTTEAEYIAVGSACTQLIWMKIMLHEYGFTQDIMTLYYDNMSPIDISKNLV
        CVSL T EAEYIAVGS CTQ++WMK ML+EYG  QD+MTLY DNMS IDISKN V
Subjt:  CVSLFTTEAEYIAVGSACTQLIWMKIMLHEYGFTQDIMTLYYDNMSPIDISKNLV

KAA0036986.1 uncharacterized protein E6C27_scaffold86G00670 [Cucumis melo var. makuwa]4.3e-61100Show/hide
Query:  MIRSLLYQIVSQPDIAYVVGICARFQSDPRISHLEAVKRILKYVHGTSDFGILYSYDTTSILVGYCNVDWADSSDDRKSTSRGCFSLGNNFISWLSKKQN
        MIRSLLYQIVSQPDIAYVVGICARFQSDPRISHLEAVKRILKYVHGTSDFGILYSYDTTSILVGYCNVDWADSSDDRKSTSRGCFSLGNNFISWLSKKQN
Subjt:  MIRSLLYQIVSQPDIAYVVGICARFQSDPRISHLEAVKRILKYVHGTSDFGILYSYDTTSILVGYCNVDWADSSDDRKSTSRGCFSLGNNFISWLSKKQN

Query:  CVSLFTTEAEYIAVGSACT
        CVSLFTTEAEYIAVGSACT
Subjt:  CVSLFTTEAEYIAVGSACT

KAA0055610.1 gag-pol polyprotein [Cucumis melo var. makuwa]5.5e-6478.71Show/hide
Query:  MIRSLLYQIVSQPDIAYVVGICARFQSDPRISHLEAVKRILKYVHGTSDFGILYSYDTTSILVGYCNVDWADSSDDRKSTSRGCFSLGNNFISWLSKKQN
        ++ SLLY   S+P+IAYVVGICA +Q+DPRI+HLEAVKRILKYVHGTSDFG++YSYDTT  LVGYC+ DWA S+DDRKSTS GCF LGNN ISWLSKKQN
Subjt:  MIRSLLYQIVSQPDIAYVVGICARFQSDPRISHLEAVKRILKYVHGTSDFGILYSYDTTSILVGYCNVDWADSSDDRKSTSRGCFSLGNNFISWLSKKQN

Query:  CVSLFTTEAEYIAVGSACTQLIWMKIMLHEYGFTQDIMTLYYDNMSPIDISKNLV
        CVSL TTEAEYIA GS CTQLIWMK MLHEYGF QD MTLY DN S IDISKN V
Subjt:  CVSLFTTEAEYIAVGSACTQLIWMKIMLHEYGFTQDIMTLYYDNMSPIDISKNLV

TYK21311.1 F5J5.1 [Cucumis melo var. makuwa]3.4e-5875.66Show/hide
Query:  MIRSLLYQIVSQPDIAYVVGICARFQSDPRISHLEAVKRILKYVHGTSDFGILYSYDTTSILVGYCNVDWADSSDDRKSTSRGCFSLGNNFISWLSKKQN
        +IRSLLY   S+PDIAY VGICA+FQSDPR SHL  VKRI+KYVHGT+DFGILYSYDTTSILVGYC+ DW  S+DDR+STS GCF LG     W SKKQ 
Subjt:  MIRSLLYQIVSQPDIAYVVGICARFQSDPRISHLEAVKRILKYVHGTSDFGILYSYDTTSILVGYCNVDWADSSDDRKSTSRGCFSLGNNFISWLSKKQN

Query:  CVSLFTTEAEYIAVGSACTQLIWMKIMLHEYGFTQDIMTLYYDNMSPIDISK
        CVSL T E EYIA GS CTQLIWMK MLHEYG TQD+MTLY DNMS IDISK
Subjt:  CVSLFTTEAEYIAVGSACTQLIWMKIMLHEYGFTQDIMTLYYDNMSPIDISK

TYK23188.1 gag-pol polyprotein [Cucumis melo var. makuwa]6.3e-6074.19Show/hide
Query:  MIRSLLYQIVSQPDIAYVVGICARFQSDPRISHLEAVKRILKYVHGTSDFGILYSYDTTSILVGYCNVDWADSSDDRKSTSRGCFSLGNNFISWLSKKQN
        ++ +LLY   S+PDIAY VGICAR+Q+DPRISHLEAVKRILKYVHGT+DFG++YSYDTT  LVGYC+ DWA  +DDRKSTS GCF LGNN I WLSKKQN
Subjt:  MIRSLLYQIVSQPDIAYVVGICARFQSDPRISHLEAVKRILKYVHGTSDFGILYSYDTTSILVGYCNVDWADSSDDRKSTSRGCFSLGNNFISWLSKKQN

Query:  CVSLFTTEAEYIAVGSACTQLIWMKIMLHEYGFTQDIMTLYYDNMSPIDISKNLV
        CVSL TTEAEYI  GS CTQLIWM+ +L EYGF Q  +TLY DNMS IDISKN V
Subjt:  CVSLFTTEAEYIAVGSACTQLIWMKIMLHEYGFTQDIMTLYYDNMSPIDISKNLV

TrEMBL top hitse value%identityAlignment
A0A5A7SYI8 F5J5.11.7e-5875.66Show/hide
Query:  MIRSLLYQIVSQPDIAYVVGICARFQSDPRISHLEAVKRILKYVHGTSDFGILYSYDTTSILVGYCNVDWADSSDDRKSTSRGCFSLGNNFISWLSKKQN
        +IRSLLY   S+PDIAY VGICA+FQSDPR SHL  VKRI+KYVHGT+DFGILYSYDTTSILVGYC+ DW  S+DDR+STS GCF LG     W SKKQ 
Subjt:  MIRSLLYQIVSQPDIAYVVGICARFQSDPRISHLEAVKRILKYVHGTSDFGILYSYDTTSILVGYCNVDWADSSDDRKSTSRGCFSLGNNFISWLSKKQN

Query:  CVSLFTTEAEYIAVGSACTQLIWMKIMLHEYGFTQDIMTLYYDNMSPIDISK
        CVSL T E EYIA GS CTQLIWMK MLHEYG TQD+MTLY DNMS IDISK
Subjt:  CVSLFTTEAEYIAVGSACTQLIWMKIMLHEYGFTQDIMTLYYDNMSPIDISK

A0A5A7T4E0 Uncharacterized protein2.1e-61100Show/hide
Query:  MIRSLLYQIVSQPDIAYVVGICARFQSDPRISHLEAVKRILKYVHGTSDFGILYSYDTTSILVGYCNVDWADSSDDRKSTSRGCFSLGNNFISWLSKKQN
        MIRSLLYQIVSQPDIAYVVGICARFQSDPRISHLEAVKRILKYVHGTSDFGILYSYDTTSILVGYCNVDWADSSDDRKSTSRGCFSLGNNFISWLSKKQN
Subjt:  MIRSLLYQIVSQPDIAYVVGICARFQSDPRISHLEAVKRILKYVHGTSDFGILYSYDTTSILVGYCNVDWADSSDDRKSTSRGCFSLGNNFISWLSKKQN

Query:  CVSLFTTEAEYIAVGSACT
        CVSLFTTEAEYIAVGSACT
Subjt:  CVSLFTTEAEYIAVGSACT

A0A5D3B7L1 Gag-pol polyprotein1.8e-6075.48Show/hide
Query:  MIRSLLYQIVSQPDIAYVVGICARFQSDPRISHLEAVKRILKYVHGTSDFGILYSYDTTSILVGYCNVDWADSSDDRKSTSRGCFSLGNNFISWLSKKQN
        MI SLLY   S+PDIAYVVGICAR+QSDPR SHL AVKR++KYVHGT+DFGILYSYDT+  LVGYC  DWA S  DRK TS GCF LGNN +SW SKKQN
Subjt:  MIRSLLYQIVSQPDIAYVVGICARFQSDPRISHLEAVKRILKYVHGTSDFGILYSYDTTSILVGYCNVDWADSSDDRKSTSRGCFSLGNNFISWLSKKQN

Query:  CVSLFTTEAEYIAVGSACTQLIWMKIMLHEYGFTQDIMTLYYDNMSPIDISKNLV
        CVSL T EAEYIAVGS CTQ++WMK ML+EYG  QD+MTLY DNMS IDISKN V
Subjt:  CVSLFTTEAEYIAVGSACTQLIWMKIMLHEYGFTQDIMTLYYDNMSPIDISKNLV

A0A5D3DI97 Gag-pol polyprotein3.0e-6074.19Show/hide
Query:  MIRSLLYQIVSQPDIAYVVGICARFQSDPRISHLEAVKRILKYVHGTSDFGILYSYDTTSILVGYCNVDWADSSDDRKSTSRGCFSLGNNFISWLSKKQN
        ++ +LLY   S+PDIAY VGICAR+Q+DPRISHLEAVKRILKYVHGT+DFG++YSYDTT  LVGYC+ DWA  +DDRKSTS GCF LGNN I WLSKKQN
Subjt:  MIRSLLYQIVSQPDIAYVVGICARFQSDPRISHLEAVKRILKYVHGTSDFGILYSYDTTSILVGYCNVDWADSSDDRKSTSRGCFSLGNNFISWLSKKQN

Query:  CVSLFTTEAEYIAVGSACTQLIWMKIMLHEYGFTQDIMTLYYDNMSPIDISKNLV
        CVSL TTEAEYI  GS CTQLIWM+ +L EYGF Q  +TLY DNMS IDISKN V
Subjt:  CVSLFTTEAEYIAVGSACTQLIWMKIMLHEYGFTQDIMTLYYDNMSPIDISKNLV

A0A5D3DLL1 Gag-pol polyprotein2.7e-6478.71Show/hide
Query:  MIRSLLYQIVSQPDIAYVVGICARFQSDPRISHLEAVKRILKYVHGTSDFGILYSYDTTSILVGYCNVDWADSSDDRKSTSRGCFSLGNNFISWLSKKQN
        ++ SLLY   S+P+IAYVVGICA +Q+DPRI+HLEAVKRILKYVHGTSDFG++YSYDTT  LVGYC+ DWA S+DDRKSTS GCF LGNN ISWLSKKQN
Subjt:  MIRSLLYQIVSQPDIAYVVGICARFQSDPRISHLEAVKRILKYVHGTSDFGILYSYDTTSILVGYCNVDWADSSDDRKSTSRGCFSLGNNFISWLSKKQN

Query:  CVSLFTTEAEYIAVGSACTQLIWMKIMLHEYGFTQDIMTLYYDNMSPIDISKNLV
        CVSL TTEAEYIA GS CTQLIWMK MLHEYGF QD MTLY DN S IDISKN V
Subjt:  CVSLFTTEAEYIAVGSACTQLIWMKIMLHEYGFTQDIMTLYYDNMSPIDISKNLV

SwissProt top hitse value%identityAlignment
P04146 Copia protein2.3e-1732.28Show/hide
Query:  MIRSLLY-QIVSQPDIAYVVGICARFQSDPRISHLEAVKRILKYVHGTSDFGILYSYDTT--SILVGYCNVDWADSSDDRKSTSRGCFSLGN-NFISWLS
        +I  L+Y  + ++PD+   V I +R+ S       + +KR+L+Y+ GT D  +++  +    + ++GY + DWA S  DRKST+   F + + N I W +
Subjt:  MIRSLLY-QIVSQPDIAYVVGICARFQSDPRISHLEAVKRILKYVHGTSDFGILYSYDTT--SILVGYCNVDWADSSDDRKSTSRGCFSLGN-NFISWLS

Query:  KKQNCVSLFTTEAEYIAVGSACTQLIWMKIMLHEYGF-TQDIMTLYYDNMSPIDISKN
        K+QN V+  +TEAEY+A+  A  + +W+K +L       ++ + +Y DN   I I+ N
Subjt:  KKQNCVSLFTTEAEYIAVGSACTQLIWMKIMLHEYGF-TQDIMTLYYDNMSPIDISKN

P0CV72 Secreted RxLR effector protein 1614.1e-2238.1Show/hide
Query:  IRSLLY-QIVSQPDIAYVVGICARFQSDPRISHLEAVKRILKYVHGTSDFGILYSYDTTSILVGYCNVDWADSSDDRKSTSRGCFSLGNNFISWLSKKQN
        + +++Y  +V++PD+A  VG+ ++F SDP  +H +A+KR+L+Y+  T  +G+ ++   T+ LVGY + DWA   + R+STS   F L    +SW SKKQ 
Subjt:  IRSLLY-QIVSQPDIAYVVGICARFQSDPRISHLEAVKRILKYVHGTSDFGILYSYDTTSILVGYCNVDWADSSDDRKSTSRGCFSLGNNFISWLSKKQN

Query:  CVSLFTTEAEYIAVGSACTQLIWMKI
         V+L +TE EY+A+  A  + +W+ +
Subjt:  CVSLFTTEAEYIAVGSACTQLIWMKI

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-944.7e-2643.14Show/hide
Query:  IRSLLYQIV-SQPDIAYVVGICARFQSDPRISHLEAVKRILKYVHGTSDFGILYSYDTTSILVGYCNVDWADSSDDRKSTSRGCFSLGNNFISWLSKKQN
        + SL+Y +V ++PDIA+ VG+ +RF  +P   H EAVK IL+Y+ GT+   + +   +  IL GY + D A   D+RKS++   F+     ISW SK Q 
Subjt:  IRSLLYQIV-SQPDIAYVVGICARFQSDPRISHLEAVKRILKYVHGTSDFGILYSYDTTSILVGYCNVDWADSSDDRKSTSRGCFSLGNNFISWLSKKQN

Query:  CVSLFTTEAEYIAVGSACTQLIWMKIMLHEYGFTQDIMTLYYDNMSPIDISKN
        CV+L TTEAEYIA      ++IW+K  L E G  Q    +Y D+ S ID+SKN
Subjt:  CVSLFTTEAEYIAVGSACTQLIWMKIMLHEYGFTQDIMTLYYDNMSPIDISKN

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE15.6e-1936.54Show/hide
Query:  MIRSLLYQIVSQPDIAYVVGICARFQSDPRISHLEAVKRILKYVHGTSDFGILYSYDTTSILVGYCNVDWADSSDDRKSTSRGCFSLGNNFISWLSKKQN
        ++ SL Y   ++PDI+Y V   ++F   P   HL+A+KRIL+Y+ GT + GI      T  L  Y + DWA   DD  ST+     LG++ ISW SKKQ 
Subjt:  MIRSLLYQIVSQPDIAYVVGICARFQSDPRISHLEAVKRILKYVHGTSDFGILYSYDTTSILVGYCNVDWADSSDDRKSTSRGCFSLGNNFISWLSKKQN

Query:  CVSLFTTEAEYIAVGSACTQLIWMKIMLHEYGF-TQDIMTLYYDNMSPIDISKNLV
         V   +TEAEY +V +  +++ W+  +L E G        +Y DN+    +  N V
Subjt:  CVSLFTTEAEYIAVGSACTQLIWMKIMLHEYGF-TQDIMTLYYDNMSPIDISKNLV

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.6e-1835.26Show/hide
Query:  MIRSLLYQIVSQPDIAYVVGICARFQSDPRISHLEAVKRILKYVHGTSDFGILYSYDTTSILVGYCNVDWADSSDDRKSTSRGCFSLGNNFISWLSKKQN
        ++ SL Y   ++PD++Y V   +++   P   H  A+KR+L+Y+ GT D GI      T  L  Y + DWA  +DD  ST+     LG++ ISW SKKQ 
Subjt:  MIRSLLYQIVSQPDIAYVVGICARFQSDPRISHLEAVKRILKYVHGTSDFGILYSYDTTSILVGYCNVDWADSSDDRKSTSRGCFSLGNNFISWLSKKQN

Query:  CVSLFTTEAEYIAVGSACTQLIWMKIMLHEYGF-TQDIMTLYYDNMSPIDISKNLV
         V   +TEAEY +V +  ++L W+  +L E G        +Y DN+    +  N V
Subjt:  CVSLFTTEAEYIAVGSACTQLIWMKIMLHEYGF-TQDIMTLYYDNMSPIDISKNLV

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 81.5e-1933.97Show/hide
Query:  MIRSLLYQIVSQPDIAYVVGICARFQSDPRISHLEAVKRILKYVHGTSDFGILYSYDTTSILVGYCNVDWADSSDDRKSTSRGCFSLGNNFISWLSKKQN
        +I  L+Y  +++ DI++ V   ++F   PR++H +AV +IL Y+ GT   G+ YS      L  + +  +    D R+ST+  C  LG + ISW SKKQ 
Subjt:  MIRSLLYQIVSQPDIAYVVGICARFQSDPRISHLEAVKRILKYVHGTSDFGILYSYDTTSILVGYCNVDWADSSDDRKSTSRGCFSLGNNFISWLSKKQN

Query:  CVSLFTTEAEYIAVGSACTQLIWMKIMLHEYGFTQDIMTLYY-DNMSPIDISKNLV
         VS  + EAEY A+  A  +++W+     E        TL + DN + I I+ N V
Subjt:  CVSLFTTEAEYIAVGSACTQLIWMKIMLHEYGFTQDIMTLYY-DNMSPIDISKNLV

ATMG00240.1 Gag-Pol-related retrotransposon family protein3.5e-0830.43Show/hide
Query:  LYQIVSQPDIAYVVGICARFQSDPRISHLEAVKRILKYVHGTSDFGILYSYDTTSILVGYCNVDWADSSDDRKSTSRGCFSLGNNFISWLSK
        +Y  +++PD+ + V   ++F S  R + ++AV ++L YV GT   G+ YS  +   L  + + DWA   D R+S +  C  +   F+  L K
Subjt:  LYQIVSQPDIAYVVGICARFQSDPRISHLEAVKRILKYVHGTSDFGILYSYDTTSILVGYCNVDWADSSDDRKSTSRGCFSLGNNFISWLSK

ATMG00810.1 DNA/RNA polymerases superfamily protein1.1e-1734.15Show/hide
Query:  MIRSLLYQIVSQPDIAYVVGICARFQSDPRISHLEAVKRILKYVHGTSDFGILYSYDTTSILVGYCNVDWADSSDDRKSTSRGCFSLGNNFISWLSKKQN
        ++ +L Y  +++PDI+Y V I  +   +P ++  + +KR+L+YV GT   G+    ++   +  +C+ DWA  +  R+ST+  C  LG N ISW +K+Q 
Subjt:  MIRSLLYQIVSQPDIAYVVGICARFQSDPRISHLEAVKRILKYVHGTSDFGILYSYDTTSILVGYCNVDWADSSDDRKSTSRGCFSLGNNFISWLSKKQN

Query:  CVSLFTTEAEYIAVGSACTQLIW
         VS  +TE EY A+     +L W
Subjt:  CVSLFTTEAEYIAVGSACTQLIW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCAGAAGTCTGTTATATCAAATTGTCAGTCAACCTGATATTGCTTATGTTGTTGGGATATGTGCTCGTTTTCAATCTGATCCTCGTATTTCACATTTAGAAGCTGT
TAAAAGGATCCTCAAGTATGTCCATGGAACAAGTGATTTTGGAATTCTGTATTCTTATGATACGACCTCTATCTTGGTTGGATATTGCAATGTCGATTGGGCAGACTCTT
CTGATGATAGGAAAAGCACCTCTAGAGGGTGTTTCTCTCTTGGAAATAATTTTATCTCATGGCTCAGTAAGAAACAAAATTGTGTTTCCTTGTTTACTACAGAAGCTGAG
TATATTGCTGTGGGGAGTGCTTGTACCCAGTTAATTTGGATGAAAATTATGTTGCATGAGTATGGATTCACTCAGGATATTATGACCTTATACTATGATAATATGAGTCC
TATTGATATATCAAAAAATCTGGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGATCAGAAGTCTGTTATATCAAATTGTCAGTCAACCTGATATTGCTTATGTTGTTGGGATATGTGCTCGTTTTCAATCTGATCCTCGTATTTCACATTTAGAAGCTGT
TAAAAGGATCCTCAAGTATGTCCATGGAACAAGTGATTTTGGAATTCTGTATTCTTATGATACGACCTCTATCTTGGTTGGATATTGCAATGTCGATTGGGCAGACTCTT
CTGATGATAGGAAAAGCACCTCTAGAGGGTGTTTCTCTCTTGGAAATAATTTTATCTCATGGCTCAGTAAGAAACAAAATTGTGTTTCCTTGTTTACTACAGAAGCTGAG
TATATTGCTGTGGGGAGTGCTTGTACCCAGTTAATTTGGATGAAAATTATGTTGCATGAGTATGGATTCACTCAGGATATTATGACCTTATACTATGATAATATGAGTCC
TATTGATATATCAAAAAATCTGGTTTAG
Protein sequenceShow/hide protein sequence
MIRSLLYQIVSQPDIAYVVGICARFQSDPRISHLEAVKRILKYVHGTSDFGILYSYDTTSILVGYCNVDWADSSDDRKSTSRGCFSLGNNFISWLSKKQNCVSLFTTEAE
YIAVGSACTQLIWMKIMLHEYGFTQDIMTLYYDNMSPIDISKNLV