; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc12g0318591 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc12g0318591
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRibonuclease H
Genome locationCMiso1.1chr12:3731058..3731858
RNA-Seq ExpressionCmc12g0318591
SyntenyCmc12g0318591
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036943.1 uncharacterized protein E6C27_scaffold86G00190 [Cucumis melo var. makuwa]1.8e-152100Show/hide
Query:  MMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASSLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVL
        MMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASSLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVL
Subjt:  MMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASSLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVL

Query:  KFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTEATPF
        KFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTEATPF
Subjt:  KFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTEATPF

Query:  SLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKKTNASIQ
        SLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKKTNASIQ
Subjt:  SLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKKTNASIQ

KAA0037621.1 uncharacterized protein E6C27_scaffold277G002820 [Cucumis melo var. makuwa]2.3e-14295Show/hide
Query:  MMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASSLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVL
        MMARQILRS YYWTTMESDCIKY RECKKCQIYMDKIHVAAS LHILSAPWPFSLWGMDVIGPIDPKASNGHRF LV+IDYFTKWIE AS+CNVTRGVVL
Subjt:  MMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASSLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVL

Query:  KFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTEATPF
        KFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRI+EKMTITYKDWHEMLPFALHGYRTSVRTST ATPF
Subjt:  KFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTEATPF

Query:  SLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKK
        SLVYGME VLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNH QLYQ++
Subjt:  SLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKK

XP_031738551.1 LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus]3.0e-14294.21Show/hide
Query:  MARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASSLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLK
        MARQILRSGYYWTTMESDCIKYARECKKCQIYMD+IH AAS LH+LSAPWPFSLWG+DVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLK
Subjt:  MARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASSLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLK

Query:  FIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTEATPFS
        FIKKELICRYGLPEGIITDNAKNLNNKMMDELCE+FKINHRNSTPYRPKMNGAVEAANKNIKRI+EKMT TYKDWHE+LPFALHGYRTSVRTST ATPFS
Subjt:  FIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTEATPFS

Query:  LVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKK
        LVYGME VLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNF+EEKRL AL+HGQLYQK+
Subjt:  LVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKK

XP_031738857.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116402780 [Cucumis sativus]3.0e-14294.21Show/hide
Query:  MARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASSLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLK
        MARQILRSGYYWTTMESDCIKYARECKKCQIYMD+IH AAS LH+LSAPWPFSLWG+DVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLK
Subjt:  MARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASSLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLK

Query:  FIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTEATPFS
        FIKKELICRYGLPEGIITDNAKNLNNKMMDELCE+FKINHRNSTPYRPKMNGAVEAANKNIKRI+EKMT TYKDWHE+LPFALHGYRTSVRTST ATPFS
Subjt:  FIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTEATPFS

Query:  LVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKK
        LVYGME VLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNF+EEKRL AL+HGQLYQK+
Subjt:  LVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKK

XP_031741698.1 uncharacterized protein LOC116403895 [Cucumis sativus]3.0e-14294.21Show/hide
Query:  MARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASSLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLK
        MARQILRSGYYWTTMESDCIKYARECKKCQIYMD+IH AAS LH+LSAPWPFSLWG+DVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLK
Subjt:  MARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASSLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLK

Query:  FIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTEATPFS
        FIKKELICRYGLPEGIITDNAKNLNNKMMDELCE+FKINHRNSTPYRPKMNGAVEAANKNIKRI+EKMT TYKDWHE+LPFALHGYRTSVRTST ATPFS
Subjt:  FIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTEATPFS

Query:  LVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKK
        LVYGME VLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNF+EEKRL AL+HGQLYQK+
Subjt:  LVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKK

TrEMBL top hitse value%identityAlignment
A0A5A7T0A1 Ribonuclease H1.3e-14098Show/hide
Query:  MMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASSLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVL
        MMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAAS LHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVL
Subjt:  MMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASSLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVL

Query:  KFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTEATPF
        KFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRI+EKMTITYKDWHEMLPFALHGYRTSVRTST ATPF
Subjt:  KFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTEATPF

Query:  SLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAA
        SLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKR  A
Subjt:  SLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAA

A0A5A7T1D0 RNA-directed DNA polymerase4.9e-13590.38Show/hide
Query:  MMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASSLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVL
        MMAR+ILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAAS LH++S PWPFSLWGMDVIGPIDPK SNGHRFILV IDYFTKWIEAASY NVTRGVVL
Subjt:  MMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASSLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVL

Query:  KFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTEATPF
        KFIKKE ICRYGL E IITDNAKNLNNKMMDELCEQFKINHRNSTPY PKMNG VE ANKNIKRI+EKMTITYKDWHEMLPFALHGYRTSVRTST A PF
Subjt:  KFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTEATPF

Query:  SLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKK
         LVYGMEVVLPLEVE PSLRVL+EAKLDEAEWIRGRYEQLNFVEEK+L ALNH QLYQ++
Subjt:  SLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKK

A0A5A7T1X2 Ribonuclease H8.9e-153100Show/hide
Query:  MMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASSLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVL
        MMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASSLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVL
Subjt:  MMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASSLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVL

Query:  KFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTEATPF
        KFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTEATPF
Subjt:  KFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTEATPF

Query:  SLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKKTNASIQ
        SLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKKTNASIQ
Subjt:  SLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKKTNASIQ

A0A5A7T7R4 Ribonuclease H1.1e-14295Show/hide
Query:  MMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASSLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVL
        MMARQILRS YYWTTMESDCIKY RECKKCQIYMDKIHVAAS LHILSAPWPFSLWGMDVIGPIDPKASNGHRF LV+IDYFTKWIE AS+CNVTRGVVL
Subjt:  MMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASSLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVL

Query:  KFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTEATPF
        KFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRI+EKMTITYKDWHEMLPFALHGYRTSVRTST ATPF
Subjt:  KFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTEATPF

Query:  SLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKK
        SLVYGME VLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNH QLYQ++
Subjt:  SLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKK

A0A5A7V4W7 RNA-directed DNA polymerase4.9e-13591.54Show/hide
Query:  MMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASSLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVL
        M ARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHV AS LH+LSAP PFSL GMDVIGPIDPKASNGHRFILVAIDYFTKWIE ASY NVTRGVVL
Subjt:  MMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASSLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVL

Query:  KFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTEATPF
        KFIKKELICRYGLPEGIITD+AKNLNNKMMDELCEQFKINHRNST YRPKMNGAVEA N NIKRI+EKMTITYKDWHEMLPF LHGYRTSVRTST  TPF
Subjt:  KFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTEATPF

Query:  SLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKK
        SLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYE LNFVEEKRL AL HG+LYQ++
Subjt:  SLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKK

SwissProt top hitse value%identityAlignment
P03355 Gag-Pol polyprotein2.9e-1529.5Show/hide
Query:  SGYYWTTMESDCIKYARECKKC-QIYMDKIHVAASSLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKEL
        S YY    +         CK C Q+   K  V   +   +    P + W +D    I P    G++++LV ID F+ WIEA      T  VV K + +E+
Subjt:  SGYYWTTMESDCIKYARECKKC-QIYMDKIHVAASSLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKEL

Query:  ICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIVEKMTIT--YKDWHEMLPFALHGYRTSVRTSTEATPFSLVYG
          R+G+P+ + TDN     +K+   + +   I+ +    YRP+ +G VE  N+ IK  + K+T+    +DW  +LP AL+  R +       TP+ ++YG
Subjt:  ICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIVEKMTIT--YKDWHEMLPFALHGYRTSVRTSTEATPFSLVYG

P03356 Gag-Pol polyprotein1.4e-1427.5Show/hide
Query:  SGYYWTTMESDCIKYARECKKC-QIYMDKIHVAASSLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKEL
        S YY    +      A  C  C Q+   K  + A     +    P S W +D    + P    G++++LV +D F+ W+EA      T  VV K + +E+
Subjt:  SGYYWTTMESDCIKYARECKKC-QIYMDKIHVAASSLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKEL

Query:  ICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIVEKMTIT--YKDWHEMLPFALHGYRTSVRTSTEATPFSLVYG
          R+G+P+ + +DN     +++   + +   I+ +    YRP+ +G VE  N+ IK  + K+T+    +DW  +LP AL+  R +       TP+ ++YG
Subjt:  ICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIVEKMTIT--YKDWHEMLPFALHGYRTSVRTSTEATPFSLVYG

P03360 Gag-Pol polyprotein (Fragment)2.0e-1632.91Show/hide
Query:  PFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKM
        P   W +D    I   A  G++++LV +D F+ W+EA      T  VV+K +  ++I R+GLP  I +DN      K+  +LCE   ++ +    YRP+ 
Subjt:  PFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKM

Query:  NGAVEAANKNIKRIVEKMTI-TYKDWHEMLPFALHGYRTSVRTSTEA-TPFSLVYGME
        +G VE  N+ +K  + K+ I T  DW  +LP AL   R       E  +PF ++YG++
Subjt:  NGAVEAANKNIKRIVEKMTI-TYKDWHEMLPFALHGYRTSVRTSTEA-TPFSLVYGME

P08361 Gag-Pol polyprotein4.9e-1528.5Show/hide
Query:  SGYYWTTMESDCIKYARECKKC-QIYMDKIHVAASSLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKEL
        S YY    +         CK C Q+   K  V   +   +    P + W +D    + P    G++++LV +D F+ WIEA      T  VV K + +E+
Subjt:  SGYYWTTMESDCIKYARECKKC-QIYMDKIHVAASSLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKEL

Query:  ICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIVEKMTIT--YKDWHEMLPFALHGYRTSVRTSTEATPFSLVYG
          R+G+P+ + TDN     +K+   + +   I+ +    YRP+ +G VE  N+ IK  + K+T+    +DW  +LP AL+  R +       TP+ ++YG
Subjt:  ICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIVEKMTIT--YKDWHEMLPFALHGYRTSVRTSTEATPFSLVYG

P26808 Gag-Pol polyprotein1.1e-1427.5Show/hide
Query:  SGYYWTTMESDCIKYARECKKC-QIYMDKIHVAASSLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKEL
        S YY    +         CK C Q+   K  V   +   +    P + W +D    + P    G++++LV +D F+ W+EA      T  VV K + +E+
Subjt:  SGYYWTTMESDCIKYARECKKC-QIYMDKIHVAASSLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKEL

Query:  ICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIVEKMTIT--YKDWHEMLPFALHGYRTSVRTSTEATPFSLVYG
          R+G+P+ + TDN     +K+   + +   ++ +    YRP+ +G VE  N+ IK  + K+T+    +DW  +LP AL+  R +       TP+ ++YG
Subjt:  ICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIVEKMTIT--YKDWHEMLPFALHGYRTSVRTSTEATPFSLVYG

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGCTAGACAAATACTTAGATCTGGTTATTATTGGACAACGATGGAATCAGATTGCATAAAATATGCAAGGGAATGTAAAAAGTGTCAAATTTATATGGATAAGAT
CCATGTAGCAGCATCTTCATTGCATATCTTGTCAGCACCATGGCCCTTTTCTTTATGGGGAATGGATGTTATTGGACCCATTGATCCTAAAGCCTCAAATGGCCATCGTT
TTATTCTTGTGGCCATTGATTACTTCACTAAATGGATAGAGGCTGCATCTTATTGCAATGTTACAAGGGGAGTAGTGCTGAAGTTTATCAAGAAAGAGCTTATATGTCGT
TATGGTCTCCCAGAAGGTATTATTACGGATAATGCCAAGAACCTTAATAACAAAATGATGGACGAACTTTGTGAGCAGTTCAAGATCAATCACCGAAATTCGACTCCATA
TCGCCCAAAGATGAATGGGGCAGTTGAGGCAGCTAACAAAAATATTAAAAGAATCGTTGAGAAAATGACAATAACATACAAAGATTGGCATGAAATGCTACCGTTTGCGT
TGCATGGATATCGCACGTCAGTTCGTACTTCAACTGAGGCAACACCATTTTCTTTAGTTTATGGTATGGAAGTTGTTTTACCTTTAGAAGTTGAGATACCTTCATTGAGA
GTTCTCATGGAAGCTAAGTTAGATGAAGCTGAATGGATACGAGGTCGTTATGAGCAGTTGAATTTCGTTGAAGAAAAAAGGTTGGCAGCATTAAATCATGGACAACTTTA
CCAAAAGAAGACTAATGCGAGCATACAATAA
mRNA sequenceShow/hide mRNA sequence
ATGATGGCTAGACAAATACTTAGATCTGGTTATTATTGGACAACGATGGAATCAGATTGCATAAAATATGCAAGGGAATGTAAAAAGTGTCAAATTTATATGGATAAGAT
CCATGTAGCAGCATCTTCATTGCATATCTTGTCAGCACCATGGCCCTTTTCTTTATGGGGAATGGATGTTATTGGACCCATTGATCCTAAAGCCTCAAATGGCCATCGTT
TTATTCTTGTGGCCATTGATTACTTCACTAAATGGATAGAGGCTGCATCTTATTGCAATGTTACAAGGGGAGTAGTGCTGAAGTTTATCAAGAAAGAGCTTATATGTCGT
TATGGTCTCCCAGAAGGTATTATTACGGATAATGCCAAGAACCTTAATAACAAAATGATGGACGAACTTTGTGAGCAGTTCAAGATCAATCACCGAAATTCGACTCCATA
TCGCCCAAAGATGAATGGGGCAGTTGAGGCAGCTAACAAAAATATTAAAAGAATCGTTGAGAAAATGACAATAACATACAAAGATTGGCATGAAATGCTACCGTTTGCGT
TGCATGGATATCGCACGTCAGTTCGTACTTCAACTGAGGCAACACCATTTTCTTTAGTTTATGGTATGGAAGTTGTTTTACCTTTAGAAGTTGAGATACCTTCATTGAGA
GTTCTCATGGAAGCTAAGTTAGATGAAGCTGAATGGATACGAGGTCGTTATGAGCAGTTGAATTTCGTTGAAGAAAAAAGGTTGGCAGCATTAAATCATGGACAACTTTA
CCAAAAGAAGACTAATGCGAGCATACAATAA
Protein sequenceShow/hide protein sequence
MMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASSLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICR
YGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTEATPFSLVYGMEVVLPLEVEIPSLR
VLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQKKTNASIQ