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Cmc12g0321071 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc12g0321071
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr12:7850598..7851110
RNA-Seq ExpressionCmc12g0321071
SyntenyCmc12g0321071
Gene Ontology termsNA
InterPro domainsIPR032567 - LDOC1-related
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032583.1 reverse transcriptase [Cucumis melo var. makuwa]2.6e-7584.71Show/hide
Query:  MAIPFDSSKNLREIVPKDILCVLEKYRDVMPDSLPKSLPPRRMIDHEIELVLGAKPPTKNAYHMVPPELAELQKQLDELLNAGFIRPGKASYGALVLFQK
        MAIP  SS+N  E VPK+I+ VLEKYRDVMPDSLPKSLPPRRMIDHEIELV GAKPP KNAY M PPELAEL+KQLDELLNAGFIRP KASYGA VLFQ+
Subjt:  MAIPFDSSKNLREIVPKDILCVLEKYRDVMPDSLPKSLPPRRMIDHEIELVLGAKPPTKNAYHMVPPELAELQKQLDELLNAGFIRPGKASYGALVLFQK

Query:  KKDEILRLCIDYRALNKLTVRNKYPLSIITDLFDHLHGAKYFLKLDLQSGYCQVRITKGDEPKTTCVTRY
        KKD  LRLCIDYRALNKLTVRNKYPL IITDLFD LHGAKYF KLDL+SGY QVRI +GDEPKTTCVTRY
Subjt:  KKDEILRLCIDYRALNKLTVRNKYPLSIITDLFDHLHGAKYFLKLDLQSGYCQVRITKGDEPKTTCVTRY

KAA0050675.1 uncharacterized protein E6C27_scaffold673G001580 [Cucumis melo var. makuwa]8.9e-7684.12Show/hide
Query:  MAIPFDSSKNLREIVPKDILCVLEKYRDVMPDSLPKSLPPRRMIDHEIELVLGAKPPTKNAYHMVPPELAELQKQLDELLNAGFIRPGKASYGALVLFQK
        MAIP  SS+N  E VPK+I+ VLEKYRDVMPDSLPKSLPPRRMIDHEIELV GAKPPTKNAY M PPELAEL+KQLDELLNAGFI+P KA YGA VLFQ+
Subjt:  MAIPFDSSKNLREIVPKDILCVLEKYRDVMPDSLPKSLPPRRMIDHEIELVLGAKPPTKNAYHMVPPELAELQKQLDELLNAGFIRPGKASYGALVLFQK

Query:  KKDEILRLCIDYRALNKLTVRNKYPLSIITDLFDHLHGAKYFLKLDLQSGYCQVRITKGDEPKTTCVTRY
        KKD  LRLCIDYRALNKLT+RNKYPL IITDLFDHLHGAKYF KLDL+SGY QVRI +GDEPKTTCVTRY
Subjt:  KKDEILRLCIDYRALNKLTVRNKYPLSIITDLFDHLHGAKYFLKLDLQSGYCQVRITKGDEPKTTCVTRY

KAA0062340.1 polyprotein [Cucumis melo var. makuwa]3.4e-7584.71Show/hide
Query:  MAIPFDSSKNLREIVPKDILCVLEKYRDVMPDSLPKSLPPRRMIDHEIELVLGAKPPTKNAYHMVPPELAELQKQLDELLNAGFIRPGKASYGALVLFQK
        MAIP +SS+N  E VPK+I+ VLEKYRDVMPDSLPKSLPPRRMIDHEIELV G KPP KNAY M PPELAELQKQLDELLNAGFIRP KA YGA VLFQK
Subjt:  MAIPFDSSKNLREIVPKDILCVLEKYRDVMPDSLPKSLPPRRMIDHEIELVLGAKPPTKNAYHMVPPELAELQKQLDELLNAGFIRPGKASYGALVLFQK

Query:  KKDEILRLCIDYRALNKLTVRNKYPLSIITDLFDHLHGAKYFLKLDLQSGYCQVRITKGDEPKTTCVTRY
        KKD  LRLCIDYR LNKLTVRNKYPLSIITDLFD LHGAKYF KLDL+SGY QVRI +GDEPKTTCVTRY
Subjt:  KKDEILRLCIDYRALNKLTVRNKYPLSIITDLFDHLHGAKYFLKLDLQSGYCQVRITKGDEPKTTCVTRY

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]9.9e-7584.12Show/hide
Query:  MAIPFDSSKNLREIVPKDILCVLEKYRDVMPDSLPKSLPPRRMIDHEIELVLGAKPPTKNAYHMVPPELAELQKQLDELLNAGFIRPGKASYGALVLFQK
        MAIP  SS+N  E VPK+I+ VLEKYRDVMPDSLPKSLPPRRMIDHEIELV GAKPP KNAY M PPELAEL+KQLDELLNAGFIRP KA YGA VLFQ+
Subjt:  MAIPFDSSKNLREIVPKDILCVLEKYRDVMPDSLPKSLPPRRMIDHEIELVLGAKPPTKNAYHMVPPELAELQKQLDELLNAGFIRPGKASYGALVLFQK

Query:  KKDEILRLCIDYRALNKLTVRNKYPLSIITDLFDHLHGAKYFLKLDLQSGYCQVRITKGDEPKTTCVTRY
        KKD  LRLCIDYRALNKLTVRNKYPL IITDLFD LHGAKYF KLDL+SGY QVRI +GDEPKTTCVTRY
Subjt:  KKDEILRLCIDYRALNKLTVRNKYPLSIITDLFDHLHGAKYFLKLDLQSGYCQVRITKGDEPKTTCVTRY

TYK07954.1 reverse transcriptase [Cucumis melo var. makuwa]3.4e-7584.71Show/hide
Query:  MAIPFDSSKNLREIVPKDILCVLEKYRDVMPDSLPKSLPPRRMIDHEIELVLGAKPPTKNAYHMVPPELAELQKQLDELLNAGFIRPGKASYGALVLFQK
        MAIP +SS+N  E VPK+I+ VLEKYRDVMPDSLPKSLPPRRMIDHEIELV GAKPP KNAY M PPELAEL+KQLDELLNAGFIRP KA YGA VLFQK
Subjt:  MAIPFDSSKNLREIVPKDILCVLEKYRDVMPDSLPKSLPPRRMIDHEIELVLGAKPPTKNAYHMVPPELAELQKQLDELLNAGFIRPGKASYGALVLFQK

Query:  KKDEILRLCIDYRALNKLTVRNKYPLSIITDLFDHLHGAKYFLKLDLQSGYCQVRITKGDEPKTTCVTRY
        KKD  LRLCIDYRALNKLTVRNKYPL IITDLFD LHGAKYF KLDL+SGY QVRI +GDEPKTTCVTRY
Subjt:  KKDEILRLCIDYRALNKLTVRNKYPLSIITDLFDHLHGAKYFLKLDLQSGYCQVRITKGDEPKTTCVTRY

TrEMBL top hitse value%identityAlignment
A0A5A7SQC7 Reverse transcriptase1.3e-7584.71Show/hide
Query:  MAIPFDSSKNLREIVPKDILCVLEKYRDVMPDSLPKSLPPRRMIDHEIELVLGAKPPTKNAYHMVPPELAELQKQLDELLNAGFIRPGKASYGALVLFQK
        MAIP  SS+N  E VPK+I+ VLEKYRDVMPDSLPKSLPPRRMIDHEIELV GAKPP KNAY M PPELAEL+KQLDELLNAGFIRP KASYGA VLFQ+
Subjt:  MAIPFDSSKNLREIVPKDILCVLEKYRDVMPDSLPKSLPPRRMIDHEIELVLGAKPPTKNAYHMVPPELAELQKQLDELLNAGFIRPGKASYGALVLFQK

Query:  KKDEILRLCIDYRALNKLTVRNKYPLSIITDLFDHLHGAKYFLKLDLQSGYCQVRITKGDEPKTTCVTRY
        KKD  LRLCIDYRALNKLTVRNKYPL IITDLFD LHGAKYF KLDL+SGY QVRI +GDEPKTTCVTRY
Subjt:  KKDEILRLCIDYRALNKLTVRNKYPLSIITDLFDHLHGAKYFLKLDLQSGYCQVRITKGDEPKTTCVTRY

A0A5A7UAP0 Uncharacterized protein4.3e-7684.12Show/hide
Query:  MAIPFDSSKNLREIVPKDILCVLEKYRDVMPDSLPKSLPPRRMIDHEIELVLGAKPPTKNAYHMVPPELAELQKQLDELLNAGFIRPGKASYGALVLFQK
        MAIP  SS+N  E VPK+I+ VLEKYRDVMPDSLPKSLPPRRMIDHEIELV GAKPPTKNAY M PPELAEL+KQLDELLNAGFI+P KA YGA VLFQ+
Subjt:  MAIPFDSSKNLREIVPKDILCVLEKYRDVMPDSLPKSLPPRRMIDHEIELVLGAKPPTKNAYHMVPPELAELQKQLDELLNAGFIRPGKASYGALVLFQK

Query:  KKDEILRLCIDYRALNKLTVRNKYPLSIITDLFDHLHGAKYFLKLDLQSGYCQVRITKGDEPKTTCVTRY
        KKD  LRLCIDYRALNKLT+RNKYPL IITDLFDHLHGAKYF KLDL+SGY QVRI +GDEPKTTCVTRY
Subjt:  KKDEILRLCIDYRALNKLTVRNKYPLSIITDLFDHLHGAKYFLKLDLQSGYCQVRITKGDEPKTTCVTRY

A0A5A7V526 Polyprotein1.6e-7584.71Show/hide
Query:  MAIPFDSSKNLREIVPKDILCVLEKYRDVMPDSLPKSLPPRRMIDHEIELVLGAKPPTKNAYHMVPPELAELQKQLDELLNAGFIRPGKASYGALVLFQK
        MAIP +SS+N  E VPK+I+ VLEKYRDVMPDSLPKSLPPRRMIDHEIELV G KPP KNAY M PPELAELQKQLDELLNAGFIRP KA YGA VLFQK
Subjt:  MAIPFDSSKNLREIVPKDILCVLEKYRDVMPDSLPKSLPPRRMIDHEIELVLGAKPPTKNAYHMVPPELAELQKQLDELLNAGFIRPGKASYGALVLFQK

Query:  KKDEILRLCIDYRALNKLTVRNKYPLSIITDLFDHLHGAKYFLKLDLQSGYCQVRITKGDEPKTTCVTRY
        KKD  LRLCIDYR LNKLTVRNKYPLSIITDLFD LHGAKYF KLDL+SGY QVRI +GDEPKTTCVTRY
Subjt:  KKDEILRLCIDYRALNKLTVRNKYPLSIITDLFDHLHGAKYFLKLDLQSGYCQVRITKGDEPKTTCVTRY

A0A5D3C4R1 Reverse transcriptase4.8e-7584.12Show/hide
Query:  MAIPFDSSKNLREIVPKDILCVLEKYRDVMPDSLPKSLPPRRMIDHEIELVLGAKPPTKNAYHMVPPELAELQKQLDELLNAGFIRPGKASYGALVLFQK
        MAIP  SS+N  E VPK+I+ VLEKYRDVMPDSLPKSLPPRRMIDHEIELV GAKPP KNAY M PPELAEL+KQLDELLNAGFIRP KA YGA VLFQ+
Subjt:  MAIPFDSSKNLREIVPKDILCVLEKYRDVMPDSLPKSLPPRRMIDHEIELVLGAKPPTKNAYHMVPPELAELQKQLDELLNAGFIRPGKASYGALVLFQK

Query:  KKDEILRLCIDYRALNKLTVRNKYPLSIITDLFDHLHGAKYFLKLDLQSGYCQVRITKGDEPKTTCVTRY
        KKD  LRLCIDYRALNKLTVRNKYPL IITDLFD LHGAKYF KLDL+SGY QVRI +GDEPKTTCVTRY
Subjt:  KKDEILRLCIDYRALNKLTVRNKYPLSIITDLFDHLHGAKYFLKLDLQSGYCQVRITKGDEPKTTCVTRY

A0A5D3C9P8 Reverse transcriptase1.6e-7584.71Show/hide
Query:  MAIPFDSSKNLREIVPKDILCVLEKYRDVMPDSLPKSLPPRRMIDHEIELVLGAKPPTKNAYHMVPPELAELQKQLDELLNAGFIRPGKASYGALVLFQK
        MAIP +SS+N  E VPK+I+ VLEKYRDVMPDSLPKSLPPRRMIDHEIELV GAKPP KNAY M PPELAEL+KQLDELLNAGFIRP KA YGA VLFQK
Subjt:  MAIPFDSSKNLREIVPKDILCVLEKYRDVMPDSLPKSLPPRRMIDHEIELVLGAKPPTKNAYHMVPPELAELQKQLDELLNAGFIRPGKASYGALVLFQK

Query:  KKDEILRLCIDYRALNKLTVRNKYPLSIITDLFDHLHGAKYFLKLDLQSGYCQVRITKGDEPKTTCVTRY
        KKD  LRLCIDYRALNKLTVRNKYPL IITDLFD LHGAKYF KLDL+SGY QVRI +GDEPKTTCVTRY
Subjt:  KKDEILRLCIDYRALNKLTVRNKYPLSIITDLFDHLHGAKYFLKLDLQSGYCQVRITKGDEPKTTCVTRY

SwissProt top hitse value%identityAlignment
P0CT41 Transposon Tf2-12 polyprotein2.6e-1733.33Show/hide
Query:  VLEKYRDVMPDSLPKSLP-PRRMIDHEIELVL-GAKPPTKNAYHMVPPELAELQKQLDELLNAGFIRPGKASYGALVLFQKKKDEILRLCIDYRALNKLT
        + ++++D+  ++  + LP P + ++ E+EL     + P +N Y + P ++  +  ++++ L +G IR  KA     V+F  KK+  LR+ +DY+ LNK  
Subjt:  VLEKYRDVMPDSLPKSLP-PRRMIDHEIELVL-GAKPPTKNAYHMVPPELAELQKQLDELLNAGFIRPGKASYGALVLFQKKKDEILRLCIDYRALNKLT

Query:  VRNKYPLSIITDLFDHLHGAKYFLKLDLQSGYCQVRITKGDEPK
          N YPL +I  L   + G+  F KLDL+S Y  +R+ KGDE K
Subjt:  VRNKYPLSIITDLFDHLHGAKYFLKLDLQSGYCQVRITKGDEPK

P31843 RNA-directed DNA polymerase homolog5.0e-2170.77Show/hide
Query:  LRLCIDYRALNKLTVRNKYPLSIITDLFDHLHGAKYFLKLDLQSGYCQVRITKGDEPKTTCVTRY
        LR+CIDYRAL K+T++NKYP+  + DLFD L  A +F KLDL+SGY QVRI KGDEPKTTCVTRY
Subjt:  LRLCIDYRALNKLTVRNKYPLSIITDLFDHLHGAKYFLKLDLQSGYCQVRITKGDEPKTTCVTRY

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein8.5e-2135.58Show/hide
Query:  KDILCVL-----EKYRDVMPDSLP------KSLPPRRMIDHEIELVLGAKPPTKNAYHMVPPELAELQKQLDELLNAGFIRPGKASYGALVLFQKKKDEI
        KD  C L     +KYR+++ + LP       ++P    + H+IE+  GA+ P    YH+      E+ K + +LL+  FI P K+   + V+   KKD  
Subjt:  KDILCVL-----EKYRDVMPDSLP------KSLPPRRMIDHEIELVLGAKPPTKNAYHMVPPELAELQKQLDELLNAGFIRPGKASYGALVLFQKKKDEI

Query:  LRLCIDYRALNKLTVRNKYPLSIITDLFDHLHGAKYFLKLDLQSGYCQVRITKGDEPKTTCVT
         RLC+DYR LNK T+ + +PL  I +L   +  A+ F  LDL SGY Q+ +   D  KT  VT
Subjt:  LRLCIDYRALNKLTVRNKYPLSIITDLFDHLHGAKYFLKLDLQSGYCQVRITKGDEPKTTCVT

Q99315 Transposon Ty3-G Gag-Pol polyprotein8.5e-2135.58Show/hide
Query:  KDILCVL-----EKYRDVMPDSLP------KSLPPRRMIDHEIELVLGAKPPTKNAYHMVPPELAELQKQLDELLNAGFIRPGKASYGALVLFQKKKDEI
        KD  C L     +KYR+++ + LP       ++P    + H+IE+  GA+ P    YH+      E+ K + +LL+  FI P K+   + V+   KKD  
Subjt:  KDILCVL-----EKYRDVMPDSLP------KSLPPRRMIDHEIELVLGAKPPTKNAYHMVPPELAELQKQLDELLNAGFIRPGKASYGALVLFQKKKDEI

Query:  LRLCIDYRALNKLTVRNKYPLSIITDLFDHLHGAKYFLKLDLQSGYCQVRITKGDEPKTTCVT
         RLC+DYR LNK T+ + +PL  I +L   +  A+ F  LDL SGY Q+ +   D  KT  VT
Subjt:  LRLCIDYRALNKLTVRNKYPLSIITDLFDHLHGAKYFLKLDLQSGYCQVRITKGDEPKTTCVT

Q9UR07 Transposon Tf2-11 polyprotein2.6e-1733.33Show/hide
Query:  VLEKYRDVMPDSLPKSLP-PRRMIDHEIELVL-GAKPPTKNAYHMVPPELAELQKQLDELLNAGFIRPGKASYGALVLFQKKKDEILRLCIDYRALNKLT
        + ++++D+  ++  + LP P + ++ E+EL     + P +N Y + P ++  +  ++++ L +G IR  KA     V+F  KK+  LR+ +DY+ LNK  
Subjt:  VLEKYRDVMPDSLPKSLP-PRRMIDHEIELVL-GAKPPTKNAYHMVPPELAELQKQLDELLNAGFIRPGKASYGALVLFQKKKDEILRLCIDYRALNKLT

Query:  VRNKYPLSIITDLFDHLHGAKYFLKLDLQSGYCQVRITKGDEPK
          N YPL +I  L   + G+  F KLDL+S Y  +R+ KGDE K
Subjt:  VRNKYPLSIITDLFDHLHGAKYFLKLDLQSGYCQVRITKGDEPK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCATTCCATTTGACTCTTCGAAGAACCTAAGGGAGATAGTCCCTAAGGATATTCTGTGCGTATTAGAGAAGTATCGTGACGTGATGCCCGACAGTTTACCCAAGTC
TTTGCCACCTCGAAGGATGATTGATCATGAGATCGAGCTAGTGTTAGGAGCAAAACCGCCTACGAAGAACGCTTATCATATGGTGCCTCCGGAGTTAGCTGAACTTCAAA
AGCAACTAGATGAGTTATTGAATGCAGGGTTTATTAGGCCTGGAAAAGCTTCGTATGGGGCCTTAGTTCTTTTCCAGAAGAAGAAGGATGAGATTTTACGATTGTGCATC
GACTATCGTGCCTTGAACAAGCTCACGGTTCGCAACAAATATCCACTTTCTATAATCACTGACTTGTTTGATCACTTACATGGGGCAAAGTATTTTTTAAAATTGGACTT
GCAGTCAGGATACTGTCAAGTCAGAATTACCAAGGGAGACGAGCCTAAGACAACATGTGTCACCAGATATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCATTCCATTTGACTCTTCGAAGAACCTAAGGGAGATAGTCCCTAAGGATATTCTGTGCGTATTAGAGAAGTATCGTGACGTGATGCCCGACAGTTTACCCAAGTC
TTTGCCACCTCGAAGGATGATTGATCATGAGATCGAGCTAGTGTTAGGAGCAAAACCGCCTACGAAGAACGCTTATCATATGGTGCCTCCGGAGTTAGCTGAACTTCAAA
AGCAACTAGATGAGTTATTGAATGCAGGGTTTATTAGGCCTGGAAAAGCTTCGTATGGGGCCTTAGTTCTTTTCCAGAAGAAGAAGGATGAGATTTTACGATTGTGCATC
GACTATCGTGCCTTGAACAAGCTCACGGTTCGCAACAAATATCCACTTTCTATAATCACTGACTTGTTTGATCACTTACATGGGGCAAAGTATTTTTTAAAATTGGACTT
GCAGTCAGGATACTGTCAAGTCAGAATTACCAAGGGAGACGAGCCTAAGACAACATGTGTCACCAGATATTGA
Protein sequenceShow/hide protein sequence
MAIPFDSSKNLREIVPKDILCVLEKYRDVMPDSLPKSLPPRRMIDHEIELVLGAKPPTKNAYHMVPPELAELQKQLDELLNAGFIRPGKASYGALVLFQKKKDEILRLCI
DYRALNKLTVRNKYPLSIITDLFDHLHGAKYFLKLDLQSGYCQVRITKGDEPKTTCVTRY