CuGenDBv2

Gene ID	Cmc12g0321131
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr12:7998858..7999616
RNA-Seq Expression	Cmc12g0321131
Synteny	Cmc12g0321131
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily IPR041588 - Integrase zinc-binding domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025425.1 pol protein [Cucumis melo var. makuwa]

6.5e-131

94.14

Show/hide

Query:  SDSAVKTELLSEAHSSPFSMHPGSTKMHQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKSAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIW
        SDSAVKTELL+EAHSSPFSMHPGSTKM+QDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQK AGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVIW
Subjt:  SDSAVKTELLSEAHSSPFSMHPGSTKMHQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKSAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIW

Query:  VVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMSTRLDFSTAFHPQTDGQTERLNQVLKDMLQACALKFPG
        VVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAM TRLDFSTAFHPQTDGQTERLNQVL+DML+ACAL+FPG
Subjt:  VVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMSTRLDFSTAFHPQTDGQTERLNQVLKDMLQACALKFPG

Query:  SWDSHLHLMEFAYNNSFQVTVGMTLFEALYDKCCRSPVC
        SWDSHLHLMEFAYNNS+Q T+GM  FEALY KCCRSPVC
Subjt:  SWDSHLHLMEFAYNNSFQVTVGMTLFEALYDKCCRSPVC

KAA0047043.1 pol protein [Cucumis melo var. makuwa]

6.5e-131

94.14

Show/hide

Query:  SDSAVKTELLSEAHSSPFSMHPGSTKMHQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKSAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIW
        SDSAVKTELLSEAHSSPFSMHPGSTKM+QDLKRVYWWRNMKREVAEFVS+CLVCQQVKAPRQK AGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVIW
Subjt:  SDSAVKTELLSEAHSSPFSMHPGSTKMHQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKSAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIW

Query:  VVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMSTRLDFSTAFHPQTDGQTERLNQVLKDMLQACALKFPG
        VVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAM TRLDFSTAFHPQTDGQTERLNQVL+DML+ACAL+FPG
Subjt:  VVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMSTRLDFSTAFHPQTDGQTERLNQVLKDMLQACALKFPG

Query:  SWDSHLHLMEFAYNNSFQVTVGMTLFEALYDKCCRSPVC
        SWDSHLHLMEFAYNNS+Q T+GM  FEALY KCCRSPVC
Subjt:  SWDSHLHLMEFAYNNSFQVTVGMTLFEALYDKCCRSPVC

KAA0051368.1 pol protein [Cucumis melo var. makuwa]

6.5e-131

94.14

Show/hide

Query:  SDSAVKTELLSEAHSSPFSMHPGSTKMHQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKSAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIW
        SDSAVKTELLSEAHSSPFSMHPGSTKM+QDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQK AGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVIW
Subjt:  SDSAVKTELLSEAHSSPFSMHPGSTKMHQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKSAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIW

Query:  VVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMSTRLDFSTAFHPQTDGQTERLNQVLKDMLQACALKFPG
        VVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAM TRLDFSTAFHPQTDGQTERLNQVL+DML+ACAL+FPG
Subjt:  VVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMSTRLDFSTAFHPQTDGQTERLNQVLKDMLQACALKFPG

Query:  SWDSHLHLMEFAYNNSFQVTVGMTLFEALYDKCCRSPVC
        SWDSHLHLMEFAYNNS+Q T+GM  FEALY +CCRSPVC
Subjt:  SWDSHLHLMEFAYNNSFQVTVGMTLFEALYDKCCRSPVC

KAA0060848.1 pol protein [Cucumis melo var. makuwa]

1.4e-130

94.14

Show/hide

Query:  SDSAVKTELLSEAHSSPFSMHPGSTKMHQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKSAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIW
        SDSAVKTELLSEAHSSPFSMHPGSTKM+QDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQK AGLLQPLS+PEWKWENVSMDFI GLPRTLRGFTVIW
Subjt:  SDSAVKTELLSEAHSSPFSMHPGSTKMHQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKSAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIW

Query:  VVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMSTRLDFSTAFHPQTDGQTERLNQVLKDMLQACALKFPG
        VVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAM TRLDFSTAFHPQTDGQTERLNQVL+DML+ACAL+FPG
Subjt:  VVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMSTRLDFSTAFHPQTDGQTERLNQVLKDMLQACALKFPG

Query:  SWDSHLHLMEFAYNNSFQVTVGMTLFEALYDKCCRSPVC
        SWDSHLHLMEFAYNNS+Q T+GM  FEALY KCCRSPVC
Subjt:  SWDSHLHLMEFAYNNSFQVTVGMTLFEALYDKCCRSPVC

KAA0064005.1 pol protein [Cucumis melo var. makuwa]

1.9e-130

93.31

Show/hide

Query:  SDSAVKTELLSEAHSSPFSMHPGSTKMHQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKSAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIW
        SD  +KTELLSEAHSSPFSMHPGSTKM+QDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQK AGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVIW
Subjt:  SDSAVKTELLSEAHSSPFSMHPGSTKMHQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKSAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIW

Query:  VVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMSTRLDFSTAFHPQTDGQTERLNQVLKDMLQACALKFPG
        VVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAM TRLDFSTAFHPQTDGQTERLNQVL+DML+ACAL+FPG
Subjt:  VVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMSTRLDFSTAFHPQTDGQTERLNQVLKDMLQACALKFPG

Query:  SWDSHLHLMEFAYNNSFQVTVGMTLFEALYDKCCRSPVC
        SWDSHLHLMEFAYNNS+Q T+GMT FEALY +CCRSPVC
Subjt:  SWDSHLHLMEFAYNNSFQVTVGMTLFEALYDKCCRSPVC

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SLT0 Pol protein

3.1e-131

94.14

Show/hide

Query:  SDSAVKTELLSEAHSSPFSMHPGSTKMHQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKSAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIW
        SDSAVKTELL+EAHSSPFSMHPGSTKM+QDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQK AGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVIW
Subjt:  SDSAVKTELLSEAHSSPFSMHPGSTKMHQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKSAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIW

Query:  VVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMSTRLDFSTAFHPQTDGQTERLNQVLKDMLQACALKFPG
        VVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAM TRLDFSTAFHPQTDGQTERLNQVL+DML+ACAL+FPG
Subjt:  VVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMSTRLDFSTAFHPQTDGQTERLNQVLKDMLQACALKFPG

Query:  SWDSHLHLMEFAYNNSFQVTVGMTLFEALYDKCCRSPVC
        SWDSHLHLMEFAYNNS+Q T+GM  FEALY KCCRSPVC
Subjt:  SWDSHLHLMEFAYNNSFQVTVGMTLFEALYDKCCRSPVC

A0A5A7TU00 Pol protein

3.1e-131

94.14

Show/hide

Query:  SDSAVKTELLSEAHSSPFSMHPGSTKMHQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKSAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIW
        SDSAVKTELLSEAHSSPFSMHPGSTKM+QDLKRVYWWRNMKREVAEFVS+CLVCQQVKAPRQK AGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVIW
Subjt:  SDSAVKTELLSEAHSSPFSMHPGSTKMHQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKSAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIW

Query:  VVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMSTRLDFSTAFHPQTDGQTERLNQVLKDMLQACALKFPG
        VVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAM TRLDFSTAFHPQTDGQTERLNQVL+DML+ACAL+FPG
Subjt:  VVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMSTRLDFSTAFHPQTDGQTERLNQVLKDMLQACALKFPG

Query:  SWDSHLHLMEFAYNNSFQVTVGMTLFEALYDKCCRSPVC
        SWDSHLHLMEFAYNNS+Q T+GM  FEALY KCCRSPVC
Subjt:  SWDSHLHLMEFAYNNSFQVTVGMTLFEALYDKCCRSPVC

A0A5A7U7V9 Reverse transcriptase

3.1e-131

94.14

Show/hide

Query:  SDSAVKTELLSEAHSSPFSMHPGSTKMHQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKSAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIW
        SDSAVKTELLSEAHSSPFSMHPGSTKM+QDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQK AGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVIW
Subjt:  SDSAVKTELLSEAHSSPFSMHPGSTKMHQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKSAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIW

Query:  VVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMSTRLDFSTAFHPQTDGQTERLNQVLKDMLQACALKFPG
        VVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAM TRLDFSTAFHPQTDGQTERLNQVL+DML+ACAL+FPG
Subjt:  VVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMSTRLDFSTAFHPQTDGQTERLNQVLKDMLQACALKFPG

Query:  SWDSHLHLMEFAYNNSFQVTVGMTLFEALYDKCCRSPVC
        SWDSHLHLMEFAYNNS+Q T+GM  FEALY +CCRSPVC
Subjt:  SWDSHLHLMEFAYNNSFQVTVGMTLFEALYDKCCRSPVC

A0A5A7UZZ4 Pol protein

7.0e-131

94.14

Show/hide

Query:  SDSAVKTELLSEAHSSPFSMHPGSTKMHQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKSAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIW
        SDSAVKTELLSEAHSSPFSMHPGSTKM+QDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQK AGLLQPLS+PEWKWENVSMDFI GLPRTLRGFTVIW
Subjt:  SDSAVKTELLSEAHSSPFSMHPGSTKMHQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKSAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIW

Query:  VVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMSTRLDFSTAFHPQTDGQTERLNQVLKDMLQACALKFPG
        VVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAM TRLDFSTAFHPQTDGQTERLNQVL+DML+ACAL+FPG
Subjt:  VVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMSTRLDFSTAFHPQTDGQTERLNQVLKDMLQACALKFPG

Query:  SWDSHLHLMEFAYNNSFQVTVGMTLFEALYDKCCRSPVC
        SWDSHLHLMEFAYNNS+Q T+GM  FEALY KCCRSPVC
Subjt:  SWDSHLHLMEFAYNNSFQVTVGMTLFEALYDKCCRSPVC

A0A5A7VDP3 Pol protein

9.1e-131

93.31

Show/hide

Query:  SDSAVKTELLSEAHSSPFSMHPGSTKMHQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKSAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIW
        SD  +KTELLSEAHSSPFSMHPGSTKM+QDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQK AGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVIW
Subjt:  SDSAVKTELLSEAHSSPFSMHPGSTKMHQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKSAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIW

Query:  VVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMSTRLDFSTAFHPQTDGQTERLNQVLKDMLQACALKFPG
        VVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAM TRLDFSTAFHPQTDGQTERLNQVL+DML+ACAL+FPG
Subjt:  VVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMSTRLDFSTAFHPQTDGQTERLNQVLKDMLQACALKFPG

Query:  SWDSHLHLMEFAYNNSFQVTVGMTLFEALYDKCCRSPVC
        SWDSHLHLMEFAYNNS+Q T+GMT FEALY +CCRSPVC
Subjt:  SWDSHLHLMEFAYNNSFQVTVGMTLFEALYDKCCRSPVC

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

3.0e-38

33.48

Show/hide

Query:  SDSAVKTELLSEAHSSPFSMHPGSTKMHQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKSAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIW
        +D+ +   ++ + H     +HPG   +   + R + W+ +++++ E+V  C  CQ  K+   K  G LQP+   E  WE++SMDFIT LP +  G+  ++
Subjt:  SDSAVKTELLSEAHSSPFSMHPGSTKMHQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKSAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIW

Query:  VVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMSTRLDFSTAFHPQTDGQTERLNQVLKDMLQACALKFPG
        VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK      +  + FS  + PQTDGQTER NQ ++ +L+      P 
Subjt:  VVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMSTRLDFSTAFHPQTDGQTERLNQVLKDMLQACALKFPG

Query:  SWDSHLHLMEFAYNNSFQVTVGMTLFEALY
        +W  H+ L++ +YNN+      MT FE ++
Subjt:  SWDSHLHLMEFAYNNSFQVTVGMTLFEALY

P0CT35 Transposon Tf2-2 polyprotein

3.0e-38

33.48

Show/hide

Query:  SDSAVKTELLSEAHSSPFSMHPGSTKMHQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKSAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIW
        +D+ +   ++ + H     +HPG   +   + R + W+ +++++ E+V  C  CQ  K+   K  G LQP+   E  WE++SMDFIT LP +  G+  ++
Subjt:  SDSAVKTELLSEAHSSPFSMHPGSTKMHQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKSAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIW

Query:  VVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMSTRLDFSTAFHPQTDGQTERLNQVLKDMLQACALKFPG
        VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK      +  + FS  + PQTDGQTER NQ ++ +L+      P 
Subjt:  VVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMSTRLDFSTAFHPQTDGQTERLNQVLKDMLQACALKFPG

Query:  SWDSHLHLMEFAYNNSFQVTVGMTLFEALY
        +W  H+ L++ +YNN+      MT FE ++
Subjt:  SWDSHLHLMEFAYNNSFQVTVGMTLFEALY

P0CT36 Transposon Tf2-3 polyprotein

3.0e-38

33.48

Show/hide

Query:  SDSAVKTELLSEAHSSPFSMHPGSTKMHQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKSAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIW
        +D+ +   ++ + H     +HPG   +   + R + W+ +++++ E+V  C  CQ  K+   K  G LQP+   E  WE++SMDFIT LP +  G+  ++
Subjt:  SDSAVKTELLSEAHSSPFSMHPGSTKMHQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKSAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIW

Query:  VVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMSTRLDFSTAFHPQTDGQTERLNQVLKDMLQACALKFPG
        VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK      +  + FS  + PQTDGQTER NQ ++ +L+      P 
Subjt:  VVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMSTRLDFSTAFHPQTDGQTERLNQVLKDMLQACALKFPG

Query:  SWDSHLHLMEFAYNNSFQVTVGMTLFEALY
        +W  H+ L++ +YNN+      MT FE ++
Subjt:  SWDSHLHLMEFAYNNSFQVTVGMTLFEALY

P0CT41 Transposon Tf2-12 polyprotein

3.0e-38

33.48

Show/hide

Query:  SDSAVKTELLSEAHSSPFSMHPGSTKMHQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKSAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIW
        +D+ +   ++ + H     +HPG   +   + R + W+ +++++ E+V  C  CQ  K+   K  G LQP+   E  WE++SMDFIT LP +  G+  ++
Subjt:  SDSAVKTELLSEAHSSPFSMHPGSTKMHQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKSAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIW

Query:  VVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMSTRLDFSTAFHPQTDGQTERLNQVLKDMLQACALKFPG
        VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK      +  + FS  + PQTDGQTER NQ ++ +L+      P 
Subjt:  VVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMSTRLDFSTAFHPQTDGQTERLNQVLKDMLQACALKFPG

Query:  SWDSHLHLMEFAYNNSFQVTVGMTLFEALY
        +W  H+ L++ +YNN+      MT FE ++
Subjt:  SWDSHLHLMEFAYNNSFQVTVGMTLFEALY

Q9UR07 Transposon Tf2-11 polyprotein

3.0e-38

33.48

Show/hide

Query:  SDSAVKTELLSEAHSSPFSMHPGSTKMHQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKSAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIW
        +D+ +   ++ + H     +HPG   +   + R + W+ +++++ E+V  C  CQ  K+   K  G LQP+   E  WE++SMDFIT LP +  G+  ++
Subjt:  SDSAVKTELLSEAHSSPFSMHPGSTKMHQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKSAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIW

Query:  VVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMSTRLDFSTAFHPQTDGQTERLNQVLKDMLQACALKFPG
        VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK      +  + FS  + PQTDGQTER NQ ++ +L+      P 
Subjt:  VVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMSTRLDFSTAFHPQTDGQTERLNQVLKDMLQACALKFPG

Query:  SWDSHLHLMEFAYNNSFQVTVGMTLFEALY
        +W  H+ L++ +YNN+      MT FE ++
Subjt:  SWDSHLHLMEFAYNNSFQVTVGMTLFEALY

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTGGACTTTTGTTTGAGAGGCGTCTCTGTGTGCCTATCAGATAGTGCGGTTAAAACGGAATTATTATCTGAGGCTCACAGTTCTCCATTTTCCATGCACCCGGGTAG
TACGAAGATGCATCAGGACCTGAAGCGGGTTTATTGGTGGCGTAATATGAAGAGAGAGGTGGCAGAATTTGTTAGTAAATGCTTGGTGTGTCAGCAGGTTAAGGCACCAA
GGCAGAAATCAGCGGGTTTATTACAACCCTTGAGTGTACCAGAATGGAAGTGGGAAAACGTGTCCATGGATTTCATTACAGGACTGCCAAGAACTCTAAGGGGTTTTACA
GTGATTTGGGTTGTGGTGGACAGACTTACCAAATCAGCGCACTTCGTTCCAGGTAAATCCACATATACCGCTAGTAAGTGGGCACAACTGTACATGTCTGAGATAGTGAG
ACTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTCTGGAAGGGTTTGCAGACTGCTATGAGCACGAGGTTAGACTTCAGTACAG
CTTTCCATCCACAGACTGACGGTCAGACTGAGCGTCTGAACCAAGTTTTAAAAGATATGTTGCAAGCGTGTGCATTAAAATTTCCAGGTAGCTGGGACTCCCACTTGCAT
TTGATGGAATTTGCTTATAATAACAGTTTTCAGGTTACTGTTGGCATGACACTATTTGAGGCCTTGTACGACAAATGTTGTAGATCCCCTGTATGCTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MVDFCLRGVSVCLSDSAVKTELLSEAHSSPFSMHPGSTKMHQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKSAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFT
VIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMSTRLDFSTAFHPQTDGQTERLNQVLKDMLQACALKFPGSWDSHLH
LMEFAYNNSFQVTVGMTLFEALYDKCCRSPVC

Cmc12g0321131 (gene) of Melon (Charmono) v1.1 genome