; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc12g0321181 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc12g0321181
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr12:8152235..8153038
RNA-Seq ExpressionCmc12g0321181
SyntenyCmc12g0321181
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032554.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.3e-142100Show/hide
Query:  MAPSELKELKMQLEELVDKGYIRPSVSPWEAPMLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRVDDLFDQLRGAALFSKIDLKSGYHQLKVRESDIAK
        MAPSELKELKMQLEELVDKGYIRPSVSPWEAPMLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRVDDLFDQLRGAALFSKIDLKSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLEELVDKGYIRPSVSPWEAPMLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRVDDLFDQLRGAALFSKIDLKSGYHQLKVRESDIAK

Query:  TAFRTRYEHYEFRLMSFDLTNVPAVFMDLMNRIFHQYLDQFMIMFIDDILVYSIDRGAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKG
        TAFRTRYEHYEFRLMSFDLTNVPAVFMDLMNRIFHQYLDQFMIMFIDDILVYSIDRGAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKG
Subjt:  TAFRTRYEHYEFRLMSFDLTNVPAVFMDLMNRIFHQYLDQFMIMFIDDILVYSIDRGAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKG

Query:  VSINPQKVEAVVNWERPTSATEVRSFLGLVGYYRRFIEDFSRLALPLTALTRKNAK
        VSINPQKVEAVVNWERPTSATEVRSFLGLVGYYRRFIEDFSRLALPLTALTRKNAK
Subjt:  VSINPQKVEAVVNWERPTSATEVRSFLGLVGYYRRFIEDFSRLALPLTALTRKNAK

KAA0035455.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.0e-13891.39Show/hide
Query:  MAPSELKELKMQLEELVDKGYIRPSVSPWEAPMLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRVDDLFDQLRGAALFSKIDLKSGYHQLKVRESDIAK
        MAPSELKELKMQL+ELVDKGYIRPSVSPW AP+LFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPR+DDLFDQLRGAALFSKIDL+SGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLEELVDKGYIRPSVSPWEAPMLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRVDDLFDQLRGAALFSKIDLKSGYHQLKVRESDIAK

Query:  TAFRTRYEHYEFRLMSFDLTNVPAVFMDLMNRIFHQYLDQFMIMFIDDILVYSIDRGAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKG
        TAFRTRY HYEFR+M F LTN PAVFMDLMNRIFH+YLDQF+I+FIDDILVYS+DR +HEEHLRIVLQTLR+KQLYAKFSKCEFWLEQVVFLGHVVSAKG
Subjt:  TAFRTRYEHYEFRLMSFDLTNVPAVFMDLMNRIFHQYLDQFMIMFIDDILVYSIDRGAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKG

Query:  VSINPQKVEAVVNWERPTSATEVRSFLGLVGYYRRFIEDFSRLALPLTALTRKNAKCEWSDKCEQSF
        VS++PQKVEAVVNWERP SATEVRSFLGL GYYRRFIEDFSRLALPLTALTRKN K EWSDKCEQSF
Subjt:  VSINPQKVEAVVNWERPTSATEVRSFLGLVGYYRRFIEDFSRLALPLTALTRKNAKCEWSDKCEQSF

KAA0037582.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.0e-13891.39Show/hide
Query:  MAPSELKELKMQLEELVDKGYIRPSVSPWEAPMLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRVDDLFDQLRGAALFSKIDLKSGYHQLKVRESDIAK
        MAPSELKELKMQL+ELVDKGYIRPSVSPW AP+LFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPR+DDLFDQLRGAALFSKIDL+SGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLEELVDKGYIRPSVSPWEAPMLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRVDDLFDQLRGAALFSKIDLKSGYHQLKVRESDIAK

Query:  TAFRTRYEHYEFRLMSFDLTNVPAVFMDLMNRIFHQYLDQFMIMFIDDILVYSIDRGAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKG
        TAFRTRY HYEFR+M F LTN PAVFMDLMNRIFH+YLDQF+I+FIDDILVYS+DR +HEEHLRIVLQTLR+KQLYAKFSKCEFWLEQVVFLGHVVSAKG
Subjt:  TAFRTRYEHYEFRLMSFDLTNVPAVFMDLMNRIFHQYLDQFMIMFIDDILVYSIDRGAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKG

Query:  VSINPQKVEAVVNWERPTSATEVRSFLGLVGYYRRFIEDFSRLALPLTALTRKNAKCEWSDKCEQSF
        VS++PQKVEAVVNWERP SATEVRSFLGL GYYRRFIEDFSRLALPLTALTRKN K EWSDKCEQSF
Subjt:  VSINPQKVEAVVNWERPTSATEVRSFLGLVGYYRRFIEDFSRLALPLTALTRKNAKCEWSDKCEQSF

TYK06334.1 putative polyprotein [Cucumis melo var. makuwa]2.0e-13891.39Show/hide
Query:  MAPSELKELKMQLEELVDKGYIRPSVSPWEAPMLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRVDDLFDQLRGAALFSKIDLKSGYHQLKVRESDIAK
        MAPSELKELKMQL+ELVDKGYIRPSVSPW AP+LFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPR+DDLFDQLRGAALFSKIDL+SGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLEELVDKGYIRPSVSPWEAPMLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRVDDLFDQLRGAALFSKIDLKSGYHQLKVRESDIAK

Query:  TAFRTRYEHYEFRLMSFDLTNVPAVFMDLMNRIFHQYLDQFMIMFIDDILVYSIDRGAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKG
        TAFRTRY HYEFR+M F LTN PAVFMDLMNRIFH+YLDQF+I+FIDDILVYS+DR +HEEHLRIVLQTLR+KQLYAKFSKCEFWLEQVVFLGHVVSAKG
Subjt:  TAFRTRYEHYEFRLMSFDLTNVPAVFMDLMNRIFHQYLDQFMIMFIDDILVYSIDRGAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKG

Query:  VSINPQKVEAVVNWERPTSATEVRSFLGLVGYYRRFIEDFSRLALPLTALTRKNAKCEWSDKCEQSF
        VS++PQKVEAVVNWERP SATEVRSFLGL GYYRRFIEDFSRLALPLTALTRKN K EWSDKCEQSF
Subjt:  VSINPQKVEAVVNWERPTSATEVRSFLGLVGYYRRFIEDFSRLALPLTALTRKNAKCEWSDKCEQSF

TYK27507.1 reverse transcriptase [Cucumis melo var. makuwa]2.0e-13891.39Show/hide
Query:  MAPSELKELKMQLEELVDKGYIRPSVSPWEAPMLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRVDDLFDQLRGAALFSKIDLKSGYHQLKVRESDIAK
        MAPSELKELKMQL+ELVDKGYIRPSVSPW AP+LFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPR+DDLFDQLRGAALFSKIDL+SGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLEELVDKGYIRPSVSPWEAPMLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRVDDLFDQLRGAALFSKIDLKSGYHQLKVRESDIAK

Query:  TAFRTRYEHYEFRLMSFDLTNVPAVFMDLMNRIFHQYLDQFMIMFIDDILVYSIDRGAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKG
        TAFRTRY HYEFR+M F LTN PAVFMDLMNRIFH+YLDQF+I+FIDDILVYS+DR +HEEHLRIVLQTLR+KQLYAKFSKCEFWLEQVVFLGHVVSAKG
Subjt:  TAFRTRYEHYEFRLMSFDLTNVPAVFMDLMNRIFHQYLDQFMIMFIDDILVYSIDRGAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKG

Query:  VSINPQKVEAVVNWERPTSATEVRSFLGLVGYYRRFIEDFSRLALPLTALTRKNAKCEWSDKCEQSF
        VS++PQKVEAVVNWERP SATEVRSFLGL GYYRRFIEDFSRLALPLTALTRKN K EWSDKCEQSF
Subjt:  VSINPQKVEAVVNWERPTSATEVRSFLGLVGYYRRFIEDFSRLALPLTALTRKNAKCEWSDKCEQSF

TrEMBL top hitse value%identityAlignment
A0A5A7SN03 DNA/RNA polymerases superfamily protein1.1e-142100Show/hide
Query:  MAPSELKELKMQLEELVDKGYIRPSVSPWEAPMLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRVDDLFDQLRGAALFSKIDLKSGYHQLKVRESDIAK
        MAPSELKELKMQLEELVDKGYIRPSVSPWEAPMLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRVDDLFDQLRGAALFSKIDLKSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLEELVDKGYIRPSVSPWEAPMLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRVDDLFDQLRGAALFSKIDLKSGYHQLKVRESDIAK

Query:  TAFRTRYEHYEFRLMSFDLTNVPAVFMDLMNRIFHQYLDQFMIMFIDDILVYSIDRGAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKG
        TAFRTRYEHYEFRLMSFDLTNVPAVFMDLMNRIFHQYLDQFMIMFIDDILVYSIDRGAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKG
Subjt:  TAFRTRYEHYEFRLMSFDLTNVPAVFMDLMNRIFHQYLDQFMIMFIDDILVYSIDRGAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKG

Query:  VSINPQKVEAVVNWERPTSATEVRSFLGLVGYYRRFIEDFSRLALPLTALTRKNAK
        VSINPQKVEAVVNWERPTSATEVRSFLGLVGYYRRFIEDFSRLALPLTALTRKNAK
Subjt:  VSINPQKVEAVVNWERPTSATEVRSFLGLVGYYRRFIEDFSRLALPLTALTRKNAK

A0A5A7T1Y5 Reverse transcriptase9.6e-13991.39Show/hide
Query:  MAPSELKELKMQLEELVDKGYIRPSVSPWEAPMLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRVDDLFDQLRGAALFSKIDLKSGYHQLKVRESDIAK
        MAPSELKELKMQL+ELVDKGYIRPSVSPW AP+LFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPR+DDLFDQLRGAALFSKIDL+SGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLEELVDKGYIRPSVSPWEAPMLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRVDDLFDQLRGAALFSKIDLKSGYHQLKVRESDIAK

Query:  TAFRTRYEHYEFRLMSFDLTNVPAVFMDLMNRIFHQYLDQFMIMFIDDILVYSIDRGAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKG
        TAFRTRY HYEFR+M F LTN PAVFMDLMNRIFH+YLDQF+I+FIDDILVYS+DR +HEEHLRIVLQTLR+KQLYAKFSKCEFWLEQVVFLGHVVSAKG
Subjt:  TAFRTRYEHYEFRLMSFDLTNVPAVFMDLMNRIFHQYLDQFMIMFIDDILVYSIDRGAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKG

Query:  VSINPQKVEAVVNWERPTSATEVRSFLGLVGYYRRFIEDFSRLALPLTALTRKNAKCEWSDKCEQSF
        VS++PQKVEAVVNWERP SATEVRSFLGL GYYRRFIEDFSRLALPLTALTRKN K EWSDKCEQSF
Subjt:  VSINPQKVEAVVNWERPTSATEVRSFLGLVGYYRRFIEDFSRLALPLTALTRKNAKCEWSDKCEQSF

A0A5A7U2V7 Reverse transcriptase9.6e-13991.39Show/hide
Query:  MAPSELKELKMQLEELVDKGYIRPSVSPWEAPMLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRVDDLFDQLRGAALFSKIDLKSGYHQLKVRESDIAK
        MAPSELKELKMQL+ELVDKGYIRPSVSPW AP+LFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPR+DDLFDQLRGAALFSKIDL+SGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLEELVDKGYIRPSVSPWEAPMLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRVDDLFDQLRGAALFSKIDLKSGYHQLKVRESDIAK

Query:  TAFRTRYEHYEFRLMSFDLTNVPAVFMDLMNRIFHQYLDQFMIMFIDDILVYSIDRGAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKG
        TAFRTRY HYEFR+M F LTN PAVFMDLMNRIFH+YLDQF+I+FIDDILVYS+DR +HEEHLRIVLQTLR+KQLYAKFSKCEFWLEQVVFLGHVVSAKG
Subjt:  TAFRTRYEHYEFRLMSFDLTNVPAVFMDLMNRIFHQYLDQFMIMFIDDILVYSIDRGAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKG

Query:  VSINPQKVEAVVNWERPTSATEVRSFLGLVGYYRRFIEDFSRLALPLTALTRKNAKCEWSDKCEQSF
        VS++PQKVEAVVNWERP SATEVRSFLGL GYYRRFIEDFSRLALPLTALTRKN K EWSDKCEQSF
Subjt:  VSINPQKVEAVVNWERPTSATEVRSFLGLVGYYRRFIEDFSRLALPLTALTRKNAKCEWSDKCEQSF

A0A5D3BHI1 Reverse transcriptase9.6e-13991.39Show/hide
Query:  MAPSELKELKMQLEELVDKGYIRPSVSPWEAPMLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRVDDLFDQLRGAALFSKIDLKSGYHQLKVRESDIAK
        MAPSELKELKMQL+ELVDKGYIRPSVSPW AP+LFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPR+DDLFDQLRGAALFSKIDL+SGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLEELVDKGYIRPSVSPWEAPMLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRVDDLFDQLRGAALFSKIDLKSGYHQLKVRESDIAK

Query:  TAFRTRYEHYEFRLMSFDLTNVPAVFMDLMNRIFHQYLDQFMIMFIDDILVYSIDRGAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKG
        TAFRTRY HYEFR+M F LTN PAVFMDLMNRIFH+YLDQF+I+FIDDILVYS+DR +HEEHLRIVLQTLR+KQLYAKFSKCEFWLEQVVFLGHVVSAKG
Subjt:  TAFRTRYEHYEFRLMSFDLTNVPAVFMDLMNRIFHQYLDQFMIMFIDDILVYSIDRGAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKG

Query:  VSINPQKVEAVVNWERPTSATEVRSFLGLVGYYRRFIEDFSRLALPLTALTRKNAKCEWSDKCEQSF
        VS++PQKVEAVVNWERP SATEVRSFLGL GYYRRFIEDFSRLALPLTALTRKN K EWSDKCEQSF
Subjt:  VSINPQKVEAVVNWERPTSATEVRSFLGLVGYYRRFIEDFSRLALPLTALTRKNAKCEWSDKCEQSF

A0A5D3BS67 Reverse transcriptase9.6e-13991.39Show/hide
Query:  MAPSELKELKMQLEELVDKGYIRPSVSPWEAPMLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRVDDLFDQLRGAALFSKIDLKSGYHQLKVRESDIAK
        MAPSELKELKMQL+ELVDKGYIRPSVSPW AP+LFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPR+DDLFDQLRGAALFSKIDL+SGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLEELVDKGYIRPSVSPWEAPMLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRVDDLFDQLRGAALFSKIDLKSGYHQLKVRESDIAK

Query:  TAFRTRYEHYEFRLMSFDLTNVPAVFMDLMNRIFHQYLDQFMIMFIDDILVYSIDRGAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKG
        TAFRTRY HYEFR+M F LTN PAVFMDLMNRIFH+YLDQF+I+FIDDILVYS+DR +HEEHLRIVLQTLR+KQLYAKFSKCEFWLEQVVFLGHVVSAKG
Subjt:  TAFRTRYEHYEFRLMSFDLTNVPAVFMDLMNRIFHQYLDQFMIMFIDDILVYSIDRGAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKG

Query:  VSINPQKVEAVVNWERPTSATEVRSFLGLVGYYRRFIEDFSRLALPLTALTRKNAKCEWSDKCEQSF
        VS++PQKVEAVVNWERP SATEVRSFLGL GYYRRFIEDFSRLALPLTALTRKN K EWSDKCEQSF
Subjt:  VSINPQKVEAVVNWERPTSATEVRSFLGLVGYYRRFIEDFSRLALPLTALTRKNAKCEWSDKCEQSF

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.67.8e-5336.96Show/hide
Query:  KELKMQLEELVDKGYIRPSVSPWEAPMLFVKKKDGT-----LRLCIDYRQLNKVTIRNKYPLPRVDDLFDQLRGAALFSKIDLKSGYHQLKVRESDIAKT
        +E++ Q+++++++G IR S SP+ +P+  V KK         R+ IDYR+LN++T+ +++P+P +D++  +L     F+ IDL  G+HQ+++    ++KT
Subjt:  KELKMQLEELVDKGYIRPSVSPWEAPMLFVKKKDGT-----LRLCIDYRQLNKVTIRNKYPLPRVDDLFDQLRGAALFSKIDLKSGYHQLKVRESDIAKT

Query:  AFRTRYEHYEFRLMSFDLTNVPAVFMDLMNRIFHQYLDQFMIMFIDDILVYSIDRGAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKGV
        AF T++ HYE+  M F L N PA F   MN I    L++  ++++DDI+V+S     H + L +V + L    L  +  KCEF  ++  FLGHV++  G+
Subjt:  AFRTRYEHYEFRLMSFDLTNVPAVFMDLMNRIFHQYLDQFMIMFIDDILVYSIDRGAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKGV

Query:  SINPQKVEAVVNWERPTSATEVRSFLGLVGYYRRFIEDFSRLALPLTALTRKNAKCE
          NP+K+EA+  +  PT   E+++FLGL GYYR+FI +F+ +A P+T   +KN K +
Subjt:  SINPQKVEAVVNWERPTSATEVRSFLGLVGYYRRFIEDFSRLALPLTALTRKNAKCE

P0CT34 Transposon Tf2-1 polyprotein4.4e-4835Show/hide
Query:  MAPSELKELKMQLEELVDKGYIRPSVSPWEAPMLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRVDDLFDQLRGAALFSKIDLKSGYHQLKVRESDIAK
        + P +++ +  ++ + +  G IR S +    P++FV KK+GTLR+ +DY+ LNK    N YPLP ++ L  +++G+ +F+K+DLKS YH ++VR+ D  K
Subjt:  MAPSELKELKMQLEELVDKGYIRPSVSPWEAPMLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRVDDLFDQLRGAALFSKIDLKSGYHQLKVRESDIAK

Query:  TAFRTRYEHYEFRLMSFDLTNVPAVFMDLMNRIFHQYLDQFMIMFIDDILVYSIDRGAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKG
         AFR     +E+ +M + ++  PA F   +N I  +  +  ++ ++DDIL++S     H +H++ VLQ L++  L    +KCEF   QV F+G+ +S KG
Subjt:  TAFRTRYEHYEFRLMSFDLTNVPAVFMDLMNRIFHQYLDQFMIMFIDDILVYSIDRGAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKG

Query:  VSINPQKVEAVVNWERPTSATEVRSFLGLVGYYRRFIEDFSRLALPLTALTRKNAKCEWS
         +   + ++ V+ W++P +  E+R FLG V Y R+FI   S+L  PL  L +K+ + +W+
Subjt:  VSINPQKVEAVVNWERPTSATEVRSFLGLVGYYRRFIEDFSRLALPLTALTRKNAKCEWS

P0CT41 Transposon Tf2-12 polyprotein4.4e-4835Show/hide
Query:  MAPSELKELKMQLEELVDKGYIRPSVSPWEAPMLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRVDDLFDQLRGAALFSKIDLKSGYHQLKVRESDIAK
        + P +++ +  ++ + +  G IR S +    P++FV KK+GTLR+ +DY+ LNK    N YPLP ++ L  +++G+ +F+K+DLKS YH ++VR+ D  K
Subjt:  MAPSELKELKMQLEELVDKGYIRPSVSPWEAPMLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRVDDLFDQLRGAALFSKIDLKSGYHQLKVRESDIAK

Query:  TAFRTRYEHYEFRLMSFDLTNVPAVFMDLMNRIFHQYLDQFMIMFIDDILVYSIDRGAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKG
         AFR     +E+ +M + ++  PA F   +N I  +  +  ++ ++DDIL++S     H +H++ VLQ L++  L    +KCEF   QV F+G+ +S KG
Subjt:  TAFRTRYEHYEFRLMSFDLTNVPAVFMDLMNRIFHQYLDQFMIMFIDDILVYSIDRGAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKG

Query:  VSINPQKVEAVVNWERPTSATEVRSFLGLVGYYRRFIEDFSRLALPLTALTRKNAKCEWS
         +   + ++ V+ W++P +  E+R FLG V Y R+FI   S+L  PL  L +K+ + +W+
Subjt:  VSINPQKVEAVVNWERPTSATEVRSFLGLVGYYRRFIEDFSRLALPLTALTRKNAKCEWS

P20825 Retrovirus-related Pol polyprotein from transposon 2976.0e-5338.67Show/hide
Query:  ELKMQLEELVDKGYIRPSVSPWEAPMLFVKKKD-----GTLRLCIDYRQLNKVTIRNKYPLPRVDDLFDQLRGAALFSKIDLKSGYHQLKVRESDIAKTA
        E++ Q++E++++G IR S SP+ +P   V KK         R+ IDYR+LN++TI ++YP+P +D++  +L     F+ IDL  G+HQ+++ E  I+KTA
Subjt:  ELKMQLEELVDKGYIRPSVSPWEAPMLFVKKKD-----GTLRLCIDYRQLNKVTIRNKYPLPRVDDLFDQLRGAALFSKIDLKSGYHQLKVRESDIAKTA

Query:  FRTRYEHYEFRLMSFDLTNVPAVFMDLMNRIFHQYLDQFMIMFIDDILVYSIDRGAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKGVS
        F T+  HYE+  M F L N PA F   MN I    L++  ++++DDI+++S     H   +++V   L D  L  +  KCEF  ++  FLGH+V+  G+ 
Subjt:  FRTRYEHYEFRLMSFDLTNVPAVFMDLMNRIFHQYLDQFMIMFIDDILVYSIDRGAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKGVS

Query:  INPQKVEAVVNWERPTSATEVRSFLGLVGYYRRFIEDFSRLALPLTALTRKNAKCE
         NP KV+A+V++  PT   E+R+FLGL GYYR+FI +++ +A P+T+  +K  K +
Subjt:  INPQKVEAVVNWERPTSATEVRSFLGLVGYYRRFIEDFSRLALPLTALTRKNAKCE

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus1.1e-5139.92Show/hide
Query:  ELKMQLEELVDKGYIRPSVSPWEAPMLFVKKK-----DGTLRLCIDYRQLNKVTIRNKYPLPRVDDLFDQLRGAALFSKIDLKSGYHQLKVRESDIAKTA
        E++ Q++EL+  G IRPS SP+ +P+  V KK     +   R+ +D+++LN VTI + YP+P ++     L  A  F+ +DL SG+HQ+ ++ESDI KTA
Subjt:  ELKMQLEELVDKGYIRPSVSPWEAPMLFVKKK-----DGTLRLCIDYRQLNKVTIRNKYPLPRVDDLFDQLRGAALFSKIDLKSGYHQLKVRESDIAKTA

Query:  FRTRYEHYEFRLMSFDLTNVPAVFMDLMNRIFHQYLDQFMIMFIDDILVYSIDRGAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKGVS
        F T    YEF  + F L N PA+F  +++ I  +++ +   ++IDDI+V+S D   H ++LR+VL +L    L     K  F   QV FLG++V+A G+ 
Subjt:  FRTRYEHYEFRLMSFDLTNVPAVFMDLMNRIFHQYLDQFMIMFIDDILVYSIDRGAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKGVS

Query:  INPQKVEAVVNWERPTSATEVRSFLGLVGYYRRFIEDFSRLALPLTALTR---KNAKCEWSDK
         +P+KV A+     PTS  E++ FLG+  YYR+FI+D++++A PLT LTR    N K   S K
Subjt:  INPQKVEAVVNWERPTSATEVRSFLGLVGYYRRFIEDFSRLALPLTALTR---KNAKCEWSDK

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein4.3e-2243.52Show/hide
Query:  HLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLG--HVVSAKGVSINPQKVEAVVNWERPTSATEVRSFLGLVGYYRRFIEDFSRLALPLTALTRKNAKCEW
        HL +VLQ     Q YA   KC F   Q+ +LG  H++S +GVS +P K+EA+V W  P + TE+R FLGL GYYRRF++++ ++  PLT L +KN+  +W
Subjt:  HLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLG--HVVSAKGVSINPQKVEAVVNWERPTSATEVRSFLGLVGYYRRFIEDFSRLALPLTALTRKNAKCEW

Query:  SDKCEQSF
        ++    +F
Subjt:  SDKCEQSF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCCAAGCGAGCTTAAAGAATTGAAGATGCAGTTAGAAGAACTGGTTGACAAGGGATACATCAGGCCTAGTGTATCGCCTTGGGAAGCACCAATGCTATTTGTGAA
AAAGAAAGATGGTACCCTCAGATTATGTATTGACTATAGACAGTTAAATAAGGTTACAATACGTAACAAGTATCCTTTACCACGTGTCGATGACTTATTTGATCAACTAA
GGGGAGCAGCATTATTCTCTAAGATTGACTTAAAGTCAGGATACCACCAGTTGAAGGTTAGAGAATCAGATATTGCTAAAACAGCATTCAGAACGAGGTATGAGCATTAT
GAGTTTCGACTTATGTCATTCGATTTAACGAATGTGCCAGCAGTTTTTATGGATCTCATGAACAGGATCTTCCATCAGTATTTAGATCAGTTTATGATCATGTTCATTGA
TGATATACTAGTTTACTCGATTGACAGAGGAGCCCATGAGGAACATCTAAGGATTGTTTTACAAACTCTACGTGATAAACAGTTGTACGCTAAGTTCAGCAAATGTGAGT
TTTGGTTGGAACAAGTAGTATTCTTGGGGCATGTAGTTTCAGCAAAAGGAGTTAGTATCAATCCACAAAAAGTGGAAGCGGTTGTCAATTGGGAAAGACCAACTAGTGCG
ACAGAAGTACGCAGTTTCCTAGGTTTGGTAGGATACTATAGGCGTTTTATTGAGGATTTCTCACGATTGGCATTGCCCTTGACCGCTTTGACAAGGAAGAATGCTAAGTG
TGAGTGGTCAGATAAATGCGAGCAAAGTTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTCCAAGCGAGCTTAAAGAATTGAAGATGCAGTTAGAAGAACTGGTTGACAAGGGATACATCAGGCCTAGTGTATCGCCTTGGGAAGCACCAATGCTATTTGTGAA
AAAGAAAGATGGTACCCTCAGATTATGTATTGACTATAGACAGTTAAATAAGGTTACAATACGTAACAAGTATCCTTTACCACGTGTCGATGACTTATTTGATCAACTAA
GGGGAGCAGCATTATTCTCTAAGATTGACTTAAAGTCAGGATACCACCAGTTGAAGGTTAGAGAATCAGATATTGCTAAAACAGCATTCAGAACGAGGTATGAGCATTAT
GAGTTTCGACTTATGTCATTCGATTTAACGAATGTGCCAGCAGTTTTTATGGATCTCATGAACAGGATCTTCCATCAGTATTTAGATCAGTTTATGATCATGTTCATTGA
TGATATACTAGTTTACTCGATTGACAGAGGAGCCCATGAGGAACATCTAAGGATTGTTTTACAAACTCTACGTGATAAACAGTTGTACGCTAAGTTCAGCAAATGTGAGT
TTTGGTTGGAACAAGTAGTATTCTTGGGGCATGTAGTTTCAGCAAAAGGAGTTAGTATCAATCCACAAAAAGTGGAAGCGGTTGTCAATTGGGAAAGACCAACTAGTGCG
ACAGAAGTACGCAGTTTCCTAGGTTTGGTAGGATACTATAGGCGTTTTATTGAGGATTTCTCACGATTGGCATTGCCCTTGACCGCTTTGACAAGGAAGAATGCTAAGTG
TGAGTGGTCAGATAAATGCGAGCAAAGTTTTTAG
Protein sequenceShow/hide protein sequence
MAPSELKELKMQLEELVDKGYIRPSVSPWEAPMLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRVDDLFDQLRGAALFSKIDLKSGYHQLKVRESDIAKTAFRTRYEHY
EFRLMSFDLTNVPAVFMDLMNRIFHQYLDQFMIMFIDDILVYSIDRGAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSINPQKVEAVVNWERPTSA
TEVRSFLGLVGYYRRFIEDFSRLALPLTALTRKNAKCEWSDKCEQSF