; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc12g0321401 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc12g0321401
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationCMiso1.1chr12:8449032..8449925
RNA-Seq ExpressionCmc12g0321401
SyntenyCmc12g0321401
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039975.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]4.6e-13681.36Show/hide
Query:  MVDEGIEKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNTIFKPFLRKFVLVFFDDILIYSKNIIDHEEHMRKVLSVLREHELYANKKKCSFAQQTVEYL
        M DE IEKTAFRTHEGHYEFLVMPFGLTNAPATFQALMN IFKPFLRKFVLVFFDDIL+YS+N  +HE HMRKVL+VLR HEL+AN+KKC FAQQ +EYL
Subjt:  MVDEGIEKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNTIFKPFLRKFVLVFFDDILIYSKNIIDHEEHMRKVLSVLREHELYANKKKCSFAQQTVEYL

Query:  GHIISREGVEVDPEKIKSITKWPKPTNIKEVRGFLGLTGYYRRFVQNYEAIAAPLTQLLKKGGYKWSAEAEDAFERLKKAMSSLPVLALPDFSQPFEIET
        GH+IS EGV VDPEKIK+I+ WP+PTN+KE RGFLGLTGYYRRFV++Y  IAAPLTQLLKKGG+ W+ EA  AF RLK AM SLPVLALPDFS+ FEIE 
Subjt:  GHIISREGVEVDPEKIKSITKWPKPTNIKEVRGFLGLTGYYRRFVQNYEAIAAPLTQLLKKGGYKWSAEAEDAFERLKKAMSSLPVLALPDFSQPFEIET

Query:  DASGYSVGAILIQAKRPIAYYSHTLALRDRARPVYERELMVVVLAVQRWRPYLLGGKFKVKTDQKSLKFLLEQRVIQTQYQNWIAKLLGYSFEVV
        DASGY VGA+L+Q KRP+AYYSHTLALRDR+RPVYERELM VVLAVQRWRPYLL GKF+VKTDQK+LKFLL+QR+IQ QYQ WIAKLLGYSFEVV
Subjt:  DASGYSVGAILIQAKRPIAYYSHTLALRDRARPVYERELMVVVLAVQRWRPYLLGGKFKVKTDQKSLKFLLEQRVIQTQYQNWIAKLLGYSFEVV

KAA0044875.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]6.7e-13580.68Show/hide
Query:  MVDEGIEKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNTIFKPFLRKFVLVFFDDILIYSKNIIDHEEHMRKVLSVLREHELYANKKKCSFAQQTVEYL
        MVDE +EKTAFRTHEGHYEFLVMPFGLTNAPATFQALMN IFKPFLRKFVLVFFDDIL+YS++  +HE HM+KVLS+LR++ELYAN+KKC FAQ+ +EYL
Subjt:  MVDEGIEKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNTIFKPFLRKFVLVFFDDILIYSKNIIDHEEHMRKVLSVLREHELYANKKKCSFAQQTVEYL

Query:  GHIISREGVEVDPEKIKSITKWPKPTNIKEVRGFLGLTGYYRRFVQNYEAIAAPLTQLLKKGGYKWSAEAEDAFERLKKAMSSLPVLALPDFSQPFEIET
        GH+IS EGV VDPEKI+SI+ WP+PTN+KE+RGFLGLTGYYRRFV+NY  IAAPLTQ LKKGG+ W+ EA  AFERLK AM +LPVLALPDFS+ FEIE 
Subjt:  GHIISREGVEVDPEKIKSITKWPKPTNIKEVRGFLGLTGYYRRFVQNYEAIAAPLTQLLKKGGYKWSAEAEDAFERLKKAMSSLPVLALPDFSQPFEIET

Query:  DASGYSVGAILIQAKRPIAYYSHTLALRDRARPVYERELMVVVLAVQRWRPYLLGGKFKVKTDQKSLKFLLEQRVIQTQYQNWIAKLLGYSFEVV
        DASGY VGA+L+Q  RPIA+YSHTLALRDRARPVYERELM VVLAVQRWRPYLL GKFKVKTDQK+LKFLL+QR+IQ QYQ WIAKLLGYSFEVV
Subjt:  DASGYSVGAILIQAKRPIAYYSHTLALRDRARPVYERELMVVVLAVQRWRPYLLGGKFKVKTDQKSLKFLLEQRVIQTQYQNWIAKLLGYSFEVV

TYK06640.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]4.6e-13681.36Show/hide
Query:  MVDEGIEKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNTIFKPFLRKFVLVFFDDILIYSKNIIDHEEHMRKVLSVLREHELYANKKKCSFAQQTVEYL
        M DE IEKTAFRTHEGHYEFLVMPFGLTNAPATFQALMN IFKPFLRKFVLVFFDDIL+YS+N  +HE HMRKVL+VLR HEL+AN+KKC FAQQ +EYL
Subjt:  MVDEGIEKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNTIFKPFLRKFVLVFFDDILIYSKNIIDHEEHMRKVLSVLREHELYANKKKCSFAQQTVEYL

Query:  GHIISREGVEVDPEKIKSITKWPKPTNIKEVRGFLGLTGYYRRFVQNYEAIAAPLTQLLKKGGYKWSAEAEDAFERLKKAMSSLPVLALPDFSQPFEIET
        GH+IS EGV VDPEKIK+I+ WP+PTN+KE RGFLGLTGYYRRFV++Y  IAAPLTQLLKKGG+ W+ EA  AF RLK AM SLPVLALPDFS+ FEIE 
Subjt:  GHIISREGVEVDPEKIKSITKWPKPTNIKEVRGFLGLTGYYRRFVQNYEAIAAPLTQLLKKGGYKWSAEAEDAFERLKKAMSSLPVLALPDFSQPFEIET

Query:  DASGYSVGAILIQAKRPIAYYSHTLALRDRARPVYERELMVVVLAVQRWRPYLLGGKFKVKTDQKSLKFLLEQRVIQTQYQNWIAKLLGYSFEVV
        DASGY VGA+L+Q KRP+AYYSHTLALRDR+RPVYERELM VVLAVQRWRPYLL GKF+VKTDQK+LKFLL+QR+IQ QYQ WIAKLLGYSFEVV
Subjt:  DASGYSVGAILIQAKRPIAYYSHTLALRDRARPVYERELMVVVLAVQRWRPYLLGGKFKVKTDQKSLKFLLEQRVIQTQYQNWIAKLLGYSFEVV

TYK18846.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.1e-13681.36Show/hide
Query:  MVDEGIEKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNTIFKPFLRKFVLVFFDDILIYSKNIIDHEEHMRKVLSVLREHELYANKKKCSFAQQTVEYL
        M DE IEKTAFRTHEGHYEFLVMPFGLTNAPATFQALMN IFKPFLRKFVLVFFDDIL+YS+N  +HE HMRKVL+VLR HEL+AN+KKC FAQQ +EYL
Subjt:  MVDEGIEKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNTIFKPFLRKFVLVFFDDILIYSKNIIDHEEHMRKVLSVLREHELYANKKKCSFAQQTVEYL

Query:  GHIISREGVEVDPEKIKSITKWPKPTNIKEVRGFLGLTGYYRRFVQNYEAIAAPLTQLLKKGGYKWSAEAEDAFERLKKAMSSLPVLALPDFSQPFEIET
        GH+IS EGV VDPEKIK+I+ WP+PTN+KE+RGFLGLTGYYRRFV+NY  IAAPLTQLLKKGG+ W+ EA  AF RLK AM SLPVLALPDFS+ FEIE 
Subjt:  GHIISREGVEVDPEKIKSITKWPKPTNIKEVRGFLGLTGYYRRFVQNYEAIAAPLTQLLKKGGYKWSAEAEDAFERLKKAMSSLPVLALPDFSQPFEIET

Query:  DASGYSVGAILIQAKRPIAYYSHTLALRDRARPVYERELMVVVLAVQRWRPYLLGGKFKVKTDQKSLKFLLEQRVIQTQYQNWIAKLLGYSFEVV
        DASGY VGA+L+Q KRP+AYYSHTLALRDR+RPVYERELM VVLAVQRW PYLL GKF+VKTDQK+LKFLL+QR+IQ QYQ WIAKLLGYSFEVV
Subjt:  DASGYSVGAILIQAKRPIAYYSHTLALRDRARPVYERELMVVVLAVQRWRPYLLGGKFKVKTDQKSLKFLLEQRVIQTQYQNWIAKLLGYSFEVV

TYK20792.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]6.7e-13580.68Show/hide
Query:  MVDEGIEKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNTIFKPFLRKFVLVFFDDILIYSKNIIDHEEHMRKVLSVLREHELYANKKKCSFAQQTVEYL
        MVDE +EKTAFRTHEGHYEFLVMPFGLTNAPATFQALMN IFKPFLRKFVLVFFDDIL+YS++  +HE HM+KVLS+LR++ELYAN+KKC FAQ+ +EYL
Subjt:  MVDEGIEKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNTIFKPFLRKFVLVFFDDILIYSKNIIDHEEHMRKVLSVLREHELYANKKKCSFAQQTVEYL

Query:  GHIISREGVEVDPEKIKSITKWPKPTNIKEVRGFLGLTGYYRRFVQNYEAIAAPLTQLLKKGGYKWSAEAEDAFERLKKAMSSLPVLALPDFSQPFEIET
        GH+IS EGV VDPEKI+SI+ WP+PTN+KE+RGFLGLTGYYRRFVQ+Y  IAAPLTQ LKKGG+ W+ EA+ AFERLK AM  LPVLALPDFS+ FEIE 
Subjt:  GHIISREGVEVDPEKIKSITKWPKPTNIKEVRGFLGLTGYYRRFVQNYEAIAAPLTQLLKKGGYKWSAEAEDAFERLKKAMSSLPVLALPDFSQPFEIET

Query:  DASGYSVGAILIQAKRPIAYYSHTLALRDRARPVYERELMVVVLAVQRWRPYLLGGKFKVKTDQKSLKFLLEQRVIQTQYQNWIAKLLGYSFEVV
        DASGY VGA+L+Q  RPIA+YSHTLALRDRARPVYERELM VVLAVQRWRPYLL GKFKVKTDQK+LKFLL+QR+IQ QYQ WIAKLLGYSFEVV
Subjt:  DASGYSVGAILIQAKRPIAYYSHTLALRDRARPVYERELMVVVLAVQRWRPYLLGGKFKVKTDQKSLKFLLEQRVIQTQYQNWIAKLLGYSFEVV

TrEMBL top hitse value%identityAlignment
A0A5A7TET8 Ty3/gypsy retrotransposon protein2.2e-13681.36Show/hide
Query:  MVDEGIEKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNTIFKPFLRKFVLVFFDDILIYSKNIIDHEEHMRKVLSVLREHELYANKKKCSFAQQTVEYL
        M DE IEKTAFRTHEGHYEFLVMPFGLTNAPATFQALMN IFKPFLRKFVLVFFDDIL+YS+N  +HE HMRKVL+VLR HEL+AN+KKC FAQQ +EYL
Subjt:  MVDEGIEKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNTIFKPFLRKFVLVFFDDILIYSKNIIDHEEHMRKVLSVLREHELYANKKKCSFAQQTVEYL

Query:  GHIISREGVEVDPEKIKSITKWPKPTNIKEVRGFLGLTGYYRRFVQNYEAIAAPLTQLLKKGGYKWSAEAEDAFERLKKAMSSLPVLALPDFSQPFEIET
        GH+IS EGV VDPEKIK+I+ WP+PTN+KE RGFLGLTGYYRRFV++Y  IAAPLTQLLKKGG+ W+ EA  AF RLK AM SLPVLALPDFS+ FEIE 
Subjt:  GHIISREGVEVDPEKIKSITKWPKPTNIKEVRGFLGLTGYYRRFVQNYEAIAAPLTQLLKKGGYKWSAEAEDAFERLKKAMSSLPVLALPDFSQPFEIET

Query:  DASGYSVGAILIQAKRPIAYYSHTLALRDRARPVYERELMVVVLAVQRWRPYLLGGKFKVKTDQKSLKFLLEQRVIQTQYQNWIAKLLGYSFEVV
        DASGY VGA+L+Q KRP+AYYSHTLALRDR+RPVYERELM VVLAVQRWRPYLL GKF+VKTDQK+LKFLL+QR+IQ QYQ WIAKLLGYSFEVV
Subjt:  DASGYSVGAILIQAKRPIAYYSHTLALRDRARPVYERELMVVVLAVQRWRPYLLGGKFKVKTDQKSLKFLLEQRVIQTQYQNWIAKLLGYSFEVV

A0A5A7TU09 Glucose-6-phosphate 1-epimerase3.2e-13580.68Show/hide
Query:  MVDEGIEKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNTIFKPFLRKFVLVFFDDILIYSKNIIDHEEHMRKVLSVLREHELYANKKKCSFAQQTVEYL
        MVDE +EKTAFRTHEGHYEFLVMPFGLTNAPATFQALMN IFKPFLRKFVLVFFDDIL+YS++  +HE HM+KVLS+LR++ELYAN+KKC FAQ+ +EYL
Subjt:  MVDEGIEKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNTIFKPFLRKFVLVFFDDILIYSKNIIDHEEHMRKVLSVLREHELYANKKKCSFAQQTVEYL

Query:  GHIISREGVEVDPEKIKSITKWPKPTNIKEVRGFLGLTGYYRRFVQNYEAIAAPLTQLLKKGGYKWSAEAEDAFERLKKAMSSLPVLALPDFSQPFEIET
        GH+IS EGV VDPEKI+SI+ WP+PTN+KE+RGFLGLTGYYRRFV+NY  IAAPLTQ LKKGG+ W+ EA  AFERLK AM +LPVLALPDFS+ FEIE 
Subjt:  GHIISREGVEVDPEKIKSITKWPKPTNIKEVRGFLGLTGYYRRFVQNYEAIAAPLTQLLKKGGYKWSAEAEDAFERLKKAMSSLPVLALPDFSQPFEIET

Query:  DASGYSVGAILIQAKRPIAYYSHTLALRDRARPVYERELMVVVLAVQRWRPYLLGGKFKVKTDQKSLKFLLEQRVIQTQYQNWIAKLLGYSFEVV
        DASGY VGA+L+Q  RPIA+YSHTLALRDRARPVYERELM VVLAVQRWRPYLL GKFKVKTDQK+LKFLL+QR+IQ QYQ WIAKLLGYSFEVV
Subjt:  DASGYSVGAILIQAKRPIAYYSHTLALRDRARPVYERELMVVVLAVQRWRPYLLGGKFKVKTDQKSLKFLLEQRVIQTQYQNWIAKLLGYSFEVV

A0A5D3D5P9 Ty3/gypsy retrotransposon protein1.0e-13681.36Show/hide
Query:  MVDEGIEKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNTIFKPFLRKFVLVFFDDILIYSKNIIDHEEHMRKVLSVLREHELYANKKKCSFAQQTVEYL
        M DE IEKTAFRTHEGHYEFLVMPFGLTNAPATFQALMN IFKPFLRKFVLVFFDDIL+YS+N  +HE HMRKVL+VLR HEL+AN+KKC FAQQ +EYL
Subjt:  MVDEGIEKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNTIFKPFLRKFVLVFFDDILIYSKNIIDHEEHMRKVLSVLREHELYANKKKCSFAQQTVEYL

Query:  GHIISREGVEVDPEKIKSITKWPKPTNIKEVRGFLGLTGYYRRFVQNYEAIAAPLTQLLKKGGYKWSAEAEDAFERLKKAMSSLPVLALPDFSQPFEIET
        GH+IS EGV VDPEKIK+I+ WP+PTN+KE+RGFLGLTGYYRRFV+NY  IAAPLTQLLKKGG+ W+ EA  AF RLK AM SLPVLALPDFS+ FEIE 
Subjt:  GHIISREGVEVDPEKIKSITKWPKPTNIKEVRGFLGLTGYYRRFVQNYEAIAAPLTQLLKKGGYKWSAEAEDAFERLKKAMSSLPVLALPDFSQPFEIET

Query:  DASGYSVGAILIQAKRPIAYYSHTLALRDRARPVYERELMVVVLAVQRWRPYLLGGKFKVKTDQKSLKFLLEQRVIQTQYQNWIAKLLGYSFEVV
        DASGY VGA+L+Q KRP+AYYSHTLALRDR+RPVYERELM VVLAVQRW PYLL GKF+VKTDQK+LKFLL+QR+IQ QYQ WIAKLLGYSFEVV
Subjt:  DASGYSVGAILIQAKRPIAYYSHTLALRDRARPVYERELMVVVLAVQRWRPYLLGGKFKVKTDQKSLKFLLEQRVIQTQYQNWIAKLLGYSFEVV

A0A5D3DB20 Ty3/gypsy retrotransposon protein3.2e-13580.68Show/hide
Query:  MVDEGIEKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNTIFKPFLRKFVLVFFDDILIYSKNIIDHEEHMRKVLSVLREHELYANKKKCSFAQQTVEYL
        MVDE +EKTAFRTHEGHYEFLVMPFGLTNAPATFQALMN IFKPFLRKFVLVFFDDIL+YS++  +HE HM+KVLS+LR++ELYAN+KKC FAQ+ +EYL
Subjt:  MVDEGIEKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNTIFKPFLRKFVLVFFDDILIYSKNIIDHEEHMRKVLSVLREHELYANKKKCSFAQQTVEYL

Query:  GHIISREGVEVDPEKIKSITKWPKPTNIKEVRGFLGLTGYYRRFVQNYEAIAAPLTQLLKKGGYKWSAEAEDAFERLKKAMSSLPVLALPDFSQPFEIET
        GH+IS EGV VDPEKI+SI+ WP+PTN+KE+RGFLGLTGYYRRFVQ+Y  IAAPLTQ LKKGG+ W+ EA+ AFERLK AM  LPVLALPDFS+ FEIE 
Subjt:  GHIISREGVEVDPEKIKSITKWPKPTNIKEVRGFLGLTGYYRRFVQNYEAIAAPLTQLLKKGGYKWSAEAEDAFERLKKAMSSLPVLALPDFSQPFEIET

Query:  DASGYSVGAILIQAKRPIAYYSHTLALRDRARPVYERELMVVVLAVQRWRPYLLGGKFKVKTDQKSLKFLLEQRVIQTQYQNWIAKLLGYSFEVV
        DASGY VGA+L+Q  RPIA+YSHTLALRDRARPVYERELM VVLAVQRWRPYLL GKFKVKTDQK+LKFLL+QR+IQ QYQ WIAKLLGYSFEVV
Subjt:  DASGYSVGAILIQAKRPIAYYSHTLALRDRARPVYERELMVVVLAVQRWRPYLLGGKFKVKTDQKSLKFLLEQRVIQTQYQNWIAKLLGYSFEVV

A0A5D3DLL9 Ty3/gypsy retrotransposon protein2.2e-13681.36Show/hide
Query:  MVDEGIEKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNTIFKPFLRKFVLVFFDDILIYSKNIIDHEEHMRKVLSVLREHELYANKKKCSFAQQTVEYL
        M DE IEKTAFRTHEGHYEFLVMPFGLTNAPATFQALMN IFKPFLRKFVLVFFDDIL+YS+N  +HE HMRKVL+VLR HEL+AN+KKC FAQQ +EYL
Subjt:  MVDEGIEKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNTIFKPFLRKFVLVFFDDILIYSKNIIDHEEHMRKVLSVLREHELYANKKKCSFAQQTVEYL

Query:  GHIISREGVEVDPEKIKSITKWPKPTNIKEVRGFLGLTGYYRRFVQNYEAIAAPLTQLLKKGGYKWSAEAEDAFERLKKAMSSLPVLALPDFSQPFEIET
        GH+IS EGV VDPEKIK+I+ WP+PTN+KE RGFLGLTGYYRRFV++Y  IAAPLTQLLKKGG+ W+ EA  AF RLK AM SLPVLALPDFS+ FEIE 
Subjt:  GHIISREGVEVDPEKIKSITKWPKPTNIKEVRGFLGLTGYYRRFVQNYEAIAAPLTQLLKKGGYKWSAEAEDAFERLKKAMSSLPVLALPDFSQPFEIET

Query:  DASGYSVGAILIQAKRPIAYYSHTLALRDRARPVYERELMVVVLAVQRWRPYLLGGKFKVKTDQKSLKFLLEQRVIQTQYQNWIAKLLGYSFEVV
        DASGY VGA+L+Q KRP+AYYSHTLALRDR+RPVYERELM VVLAVQRWRPYLL GKF+VKTDQK+LKFLL+QR+IQ QYQ WIAKLLGYSFEVV
Subjt:  DASGYSVGAILIQAKRPIAYYSHTLALRDRARPVYERELMVVVLAVQRWRPYLLGGKFKVKTDQKSLKFLLEQRVIQTQYQNWIAKLLGYSFEVV

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.62.7e-6240.54Show/hide
Query:  MVDEGIEKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNTIFKPFLRKFVLVFFDDILIYSKNIIDHEEHMRKVLSVLREHELYANKKKCSFAQQTVEYL
        M  E + KTAF T  GHYE+L MPFGL NAPATFQ  MN I +P L K  LV+ DDI+++S ++ +H + +  V   L +  L     KC F +Q   +L
Subjt:  MVDEGIEKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNTIFKPFLRKFVLVFFDDILIYSKNIIDHEEHMRKVLSVLREHELYANKKKCSFAQQTVEYL

Query:  GHIISREGVEVDPEKIKSITKWPKPTNIKEVRGFLGLTGYYRRFVQNYEAIAAPLTQLLKKGGY--KWSAEAEDAFERLKKAMSSLPVLALPDFSQPFEI
        GH+++ +G++ +PEKI++I K+P PT  KE++ FLGLTGYYR+F+ N+  IA P+T+ LKK       + E + AF++LK  +S  P+L +PDF++ F +
Subjt:  GHIISREGVEVDPEKIKSITKWPKPTNIKEVRGFLGLTGYYRRFVQNYEAIAAPLTQLLKKGGY--KWSAEAEDAFERLKKAMSSLPVLALPDFSQPFEI

Query:  ETDASGYSVGAILIQAKRPIAYYSHTLALRDRARPVYERELMVVVLAVQRWRPYLLGGKFKVKTDQKSLKFLLEQRVIQTQYQNWIAKLLGYSFEV
         TDAS  ++GA+L Q   P++Y S TL   +      E+EL+ +V A + +R YLLG  F++ +D + L +L   +   ++   W  KL  + F++
Subjt:  ETDASGYSVGAILIQAKRPIAYYSHTLALRDRARPVYERELMVVVLAVQRWRPYLLGGKFKVKTDQKSLKFLLEQRVIQTQYQNWIAKLLGYSFEV

P0CT41 Transposon Tf2-12 polyprotein6.7e-4535.35Show/hide
Query:  KTAFRTHEGHYEFLVMPFGLTNAPATFQALMNTIFKPFLRKFVLVFFDDILIYSKNIIDHEEHMRKVLSVLREHELYANKKKCSFAQQTVEYLGHIISRE
        K AFR   G +E+LVMP+G++ APA FQ  +NTI        V+ + DDILI+SK+  +H +H++ VL  L+   L  N+ KC F Q  V+++G+ IS +
Subjt:  KTAFRTHEGHYEFLVMPFGLTNAPATFQALMNTIFKPFLRKFVLVFFDDILIYSKNIIDHEEHMRKVLSVLREHELYANKKKCSFAQQTVEYLGHIISRE

Query:  GVEVDPEKIKSITKWPKPTNIKEVRGFLGLTGYYRRFVQNYEAIAAPLTQLLKKG-GYKWSAEAEDAFERLKKAMSSLPVLALPDFSQPFEIETDASGYS
        G     E I  + +W +P N KE+R FLG   Y R+F+     +  PL  LLKK   +KW+     A E +K+ + S PVL   DFS+   +ETDAS  +
Subjt:  GVEVDPEKIKSITKWPKPTNIKEVRGFLGLTGYYRRFVQNYEAIAAPLTQLLKKG-GYKWSAEAEDAFERLKKAMSSLPVLALPDFSQPFEIETDASGYS

Query:  VGAILIQAK-----RPIAYYSHTLALRDRARPVYERELMVVVLAVQRWRPYLLG--GKFKVKTDQKSL--KFLLEQRVIQTQYQNWIAKLLGYSFEV
        VGA+L Q        P+ YYS  ++       V ++E++ ++ +++ WR YL      FK+ TD ++L  +   E      +   W   L  ++FE+
Subjt:  VGAILIQAK-----RPIAYYSHTLALRDRARPVYERELMVVVLAVQRWRPYLLG--GKFKVKTDQKSL--KFLLEQRVIQTQYQNWIAKLLGYSFEV

P10401 Retrovirus-related Pol polyprotein from transposon gypsy5.8e-4936.08Show/hide
Query:  EKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNTIFKPFLRKFVLVFFDDILIYSKNIIDHEEHMRKVLSVLREHELYANKKKCSFAQQTVEYLGHIISR
        EKT+F  + G YEF  +PFGL NA + FQ  ++ + +  + K   V+ DD++I+S+N  DH  H+  VL  L +  +  +++K  F +++VEYLG I+S+
Subjt:  EKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNTIFKPFLRKFVLVFFDDILIYSKNIIDHEEHMRKVLSVLREHELYANKKKCSFAQQTVEYLGHIISR

Query:  EGVEVDPEKIKSITKWPKPTNIKEVRGFLGLTGYYRRFVQNYEAIAAPLTQLL------------KKGGYKWSAEAEDAFERLKKAMSSLPV-LALPDFS
        +G + DPEK+K+I ++P+P  + +VR FLGL  YYR F++++ AIA P+T +L            KK   +++    +AF+RL+  ++S  V L  PDF 
Subjt:  EGVEVDPEKIKSITKWPKPTNIKEVRGFLGLTGYYRRFVQNYEAIAAPLTQLL------------KKGGYKWSAEAEDAFERLKKAMSSLPV-LALPDFS

Query:  QPFEIETDASGYSVGAILIQAKRPIAYYSHTLALRDRARPVYERELMVVVLAVQRWRPYLLGGK-FKVKTDQKSLKFLLEQRVIQTQYQNW
        +PF++ TDAS   +GA+L Q  RPI   S TL   ++     EREL+ +V A+ + + +L G +   + TD + L F +  R    + + W
Subjt:  QPFEIETDASGYSVGAILIQAKRPIAYYSHTLALRDRARPVYERELMVVVLAVQRWRPYLLGGK-FKVKTDQKSLKFLLEQRVIQTQYQNW

P20825 Retrovirus-related Pol polyprotein from transposon 2974.6e-6241.55Show/hide
Query:  MVDEGIEKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNTIFKPFLRKFVLVFFDDILIYSKNIIDHEEHMRKVLSVLREHELYANKKKCSFAQQTVEYL
        M +E I KTAF T  GHYE+L MPFGL NAPATFQ  MN I +P L K  LV+ DDI+I+S ++ +H   ++ V + L +  L     KC F ++   +L
Subjt:  MVDEGIEKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNTIFKPFLRKFVLVFFDDILIYSKNIIDHEEHMRKVLSVLREHELYANKKKCSFAQQTVEYL

Query:  GHIISREGVEVDPEKIKSITKWPKPTNIKEVRGFLGLTGYYRRFVQNYEAIAAPLTQLLKKGGYKWSAEAE--DAFERLKKAMSSLPVLALPDFSQPFEI
        GHI++ +G++ +P K+K+I  +P PT  KE+R FLGLTGYYR+F+ NY  IA P+T  LKK     + + E  +AFE+LK  +   P+L LPDF + F +
Subjt:  GHIISREGVEVDPEKIKSITKWPKPTNIKEVRGFLGLTGYYRRFVQNYEAIAAPLTQLLKKGGYKWSAEAE--DAFERLKKAMSSLPVLALPDFSQPFEI

Query:  ETDASGYSVGAILIQAKRPIAYYSHTLALRDRARPVYERELMVVVLAVQRWRPYLLGGKFKVKTDQKSLKFLLEQRVIQTQYQNWIAKLLGYSFEV
         TDAS  ++GA+L Q   PI++ S TL   +      E+EL+ +V A + +R YLLG +F + +D + L++L   +    + + W  +L  Y F++
Subjt:  ETDASGYSVGAILIQAKRPIAYYSHTLALRDRARPVYERELMVVVLAVQRWRPYLLGGKFKVKTDQKSLKFLLEQRVIQTQYQNWIAKLLGYSFEV

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus1.6e-5436.54Show/hide
Query:  MVDEGIEKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNTIFKPFLRKFVLVFFDDILIYSKNIIDHEEHMRKVLSVLREHELYANKKKCSFAQQTVEYL
        M +  I KTAF T  G YEFL +PFGL NAPA FQ +++ I +  + K   V+ DDI+++S++   H +++R VL+ L +  L  N +K  F    VE+L
Subjt:  MVDEGIEKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNTIFKPFLRKFVLVFFDDILIYSKNIIDHEEHMRKVLSVLREHELYANKKKCSFAQQTVEYL

Query:  GHIISREGVEVDPEKIKSITKWPKPTNIKEVRGFLGLTGYYRRFVQNYEAIAAPLTQLLK------------KGGYKWSAEAEDAFERLKKAMSSLPVLA
        G+I++ +G++ DP+K+++I++ P PT++KE++ FLG+T YYR+F+Q+Y  +A PLT L +            K        A  +F  LK  + S  +LA
Subjt:  GHIISREGVEVDPEKIKSITKWPKPTNIKEVRGFLGLTGYYRRFVQNYEAIAAPLTQLLK------------KGGYKWSAEAEDAFERLKKAMSSLPVLA

Query:  LPDFSQPFEIETDASGYSVGAILIQ----AKRPIAYYSHTLALRDRARPVYERELMVVVLAVQRWRPYLLG-GKFKVKTDQKSLKFLLEQRVIQTQYQNW
         P F++PF + TDAS +++GA+L Q      RPIAY S +L   +      E+E++ ++ ++   R YL G G  KV TD + L F L  R    + + W
Subjt:  LPDFSQPFEIETDASGYSVGAILIQ----AKRPIAYYSHTLALRDRARPVYERELMVVVLAVQRWRPYLLG-GKFKVKTDQKSLKFLLEQRVIQTQYQNW

Query:  IAKLLGYSFEVV
         A++  Y+ E++
Subjt:  IAKLLGYSFEVV

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein4.0e-3755.81Show/hide
Query:  HMRKVLSVLREHELYANKKKCSFAQQTVEYLG--HIISREGVEVDPEKIKSITKWPKPTNIKEVRGFLGLTGYYRRFVQNYEAIAAPLTQLLKKGGYKWS
        H+  VL +  +H+ YAN+KKC+F Q  + YLG  HIIS EGV  DP K++++  WP+P N  E+RGFLGLTGYYRRFV+NY  I  PLT+LLKK   KW+
Subjt:  HMRKVLSVLREHELYANKKKCSFAQQTVEYLG--HIISREGVEVDPEKIKSITKWPKPTNIKEVRGFLGLTGYYRRFVQNYEAIAAPLTQLLKKGGYKWS

Query:  AEAEDAFERLKKAMSSLPVLALPDFSQPF
          A  AF+ LK A+++LPVLALPD   PF
Subjt:  AEAEDAFERLKKAMSSLPVLALPDFSQPF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGATGAGGGCATTGAAAAAACGGCTTTTAGAACTCACGAGGGCCATTATGAGTTCTTAGTCATGCCCTTTGGGCTAACTAACGCACCAGCCACCTTTCAAGCGTT
GATGAATACAATATTTAAGCCCTTCCTGAGAAAATTTGTATTAGTATTCTTTGACGACATACTCATCTACAGCAAAAATATAATCGATCACGAGGAACATATGAGAAAGG
TGTTGTCCGTACTAAGAGAACATGAGCTATACGCAAACAAGAAGAAATGCAGTTTCGCTCAACAAACAGTGGAATACTTAGGCCATATTATATCCAGAGAAGGAGTTGAA
GTAGACCCGGAGAAGATCAAGTCAATTACTAAGTGGCCAAAACCTACAAACATCAAAGAAGTTAGAGGTTTTCTGGGACTTACGGGGTATTATCGACGTTTTGTACAGAA
CTATGAAGCCATTGCAGCCCCATTAACTCAGTTGTTAAAAAAAGGAGGATATAAATGGTCTGCTGAAGCCGAGGATGCATTCGAACGGCTTAAAAAGGCAATGTCATCTC
TCCCAGTGTTGGCACTACCAGACTTCAGTCAACCCTTTGAAATAGAAACCGATGCTTCAGGCTACAGTGTTGGGGCAATACTAATTCAGGCGAAGAGACCAATCGCATAC
TACAGTCACACATTAGCCCTAAGGGATAGAGCCCGACCAGTGTACGAAAGGGAATTAATGGTTGTAGTATTAGCCGTCCAACGCTGGAGACCCTACTTATTGGGAGGAAA
ATTCAAGGTGAAAACTGATCAGAAGTCGTTGAAGTTTTTGTTGGAGCAGAGGGTTATCCAAACTCAATATCAAAACTGGATAGCAAAACTCTTGGGGTACTCCTTTGAAG
TCGTGTCAAGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGGATGAGGGCATTGAAAAAACGGCTTTTAGAACTCACGAGGGCCATTATGAGTTCTTAGTCATGCCCTTTGGGCTAACTAACGCACCAGCCACCTTTCAAGCGTT
GATGAATACAATATTTAAGCCCTTCCTGAGAAAATTTGTATTAGTATTCTTTGACGACATACTCATCTACAGCAAAAATATAATCGATCACGAGGAACATATGAGAAAGG
TGTTGTCCGTACTAAGAGAACATGAGCTATACGCAAACAAGAAGAAATGCAGTTTCGCTCAACAAACAGTGGAATACTTAGGCCATATTATATCCAGAGAAGGAGTTGAA
GTAGACCCGGAGAAGATCAAGTCAATTACTAAGTGGCCAAAACCTACAAACATCAAAGAAGTTAGAGGTTTTCTGGGACTTACGGGGTATTATCGACGTTTTGTACAGAA
CTATGAAGCCATTGCAGCCCCATTAACTCAGTTGTTAAAAAAAGGAGGATATAAATGGTCTGCTGAAGCCGAGGATGCATTCGAACGGCTTAAAAAGGCAATGTCATCTC
TCCCAGTGTTGGCACTACCAGACTTCAGTCAACCCTTTGAAATAGAAACCGATGCTTCAGGCTACAGTGTTGGGGCAATACTAATTCAGGCGAAGAGACCAATCGCATAC
TACAGTCACACATTAGCCCTAAGGGATAGAGCCCGACCAGTGTACGAAAGGGAATTAATGGTTGTAGTATTAGCCGTCCAACGCTGGAGACCCTACTTATTGGGAGGAAA
ATTCAAGGTGAAAACTGATCAGAAGTCGTTGAAGTTTTTGTTGGAGCAGAGGGTTATCCAAACTCAATATCAAAACTGGATAGCAAAACTCTTGGGGTACTCCTTTGAAG
TCGTGTCAAGCTAG
Protein sequenceShow/hide protein sequence
MVDEGIEKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNTIFKPFLRKFVLVFFDDILIYSKNIIDHEEHMRKVLSVLREHELYANKKKCSFAQQTVEYLGHIISREGVE
VDPEKIKSITKWPKPTNIKEVRGFLGLTGYYRRFVQNYEAIAAPLTQLLKKGGYKWSAEAEDAFERLKKAMSSLPVLALPDFSQPFEIETDASGYSVGAILIQAKRPIAY
YSHTLALRDRARPVYERELMVVVLAVQRWRPYLLGGKFKVKTDQKSLKFLLEQRVIQTQYQNWIAKLLGYSFEVVSS