; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc12g0321661 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc12g0321661
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr12:8728203..8729372
RNA-Seq ExpressionCmc12g0321661
SyntenyCmc12g0321661
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032431.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]2.3e-20491.52Show/hide
Query:  MRASKLLNQGTWSILASVVDTREVDVSLSSELVVRDYPDVFPEELPELPPHREIEFAIELEPGTIPISRAPYRMAPTELKEFKVQLQELLDKGFIRPSVS
        +RASKLL+QGTW +LASVVDTREVDVSLSSE VVRDYPDVFPEELP LPPHRE+EFAIELEPGT+PISRAPYRM P ELKE KVQLQELLDKGFIRPSVS
Subjt:  MRASKLLNQGTWSILASVVDTREVDVSLSSELVVRDYPDVFPEELPELPPHREIEFAIELEPGTIPISRAPYRMAPTELKEFKVQLQELLDKGFIRPSVS

Query:  PWGAPILFVQKKDGLMRLCIDYRVLNKAIIKNRYPLPRIDDLFDQLQGATVFSKIDLRSEYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPAVFM
        PWGAP+LFV+KKDGLMRLCIDYR LNK  +KNRYPLPRIDDLFDQLQGATVFSKIDLRS YHQLRIKDGDVPKT FR RYGHYEFIVMSFGLTNAPAVFM
Subjt:  PWGAPILFVQKKDGLMRLCIDYRVLNKAIIKNRYPLPRIDDLFDQLQGATVFSKIDLRSEYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPAVFM

Query:  DLMNKVFREFLNTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKEVSFLGQVVSKAGVSVDPAKIEAVTSWPRPSTGSEVRSFL
        DLMN+VFREFL+TFVIVFIDDILIYSKTE EHEEHL +VLQTL DNKLYAKFSKCEFWLK+VSFLG VVSKAGVSVDPAKIEAVT W RPST SEVRSFL
Subjt:  DLMNKVFREFLNTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKEVSFLGQVVSKAGVSVDPAKIEAVTSWPRPSTGSEVRSFL

Query:  GLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFLIYSDAFKKGLGCVLMQQGKVVAYASR
        GLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSF+IYSDA KKGLGCVLMQQGKVVAYASR
Subjt:  GLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFLIYSDAFKKGLGCVLMQQGKVVAYASR

KAA0037244.1 reverse transcriptase [Cucumis melo var. makuwa]6.1e-20592.29Show/hide
Query:  MRASKLLNQGTWSILASVVDTREVDVSLSSELVVRDYPDVFPEELPELPPHREIEFAIELEPGTIPISRAPYRMAPTELKEFKVQLQELLDKGFIRPSVS
        +RASKLL+QGTW ILASVVDTREVDVSLS E VVRDYPDVFPEELP LPPHRE+EFAIELEPGT+PISRAPYRMAP ELKE KVQLQELLDKGFIRPSVS
Subjt:  MRASKLLNQGTWSILASVVDTREVDVSLSSELVVRDYPDVFPEELPELPPHREIEFAIELEPGTIPISRAPYRMAPTELKEFKVQLQELLDKGFIRPSVS

Query:  PWGAPILFVQKKDGLMRLCIDYRVLNKAIIKNRYPLPRIDDLFDQLQGATVFSKIDLRSEYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPAVFM
        PWGAP+LFV+KKDG MRLCIDYR LNK  +KNRYPLPRIDDLFDQLQGATVFSKIDLRS YHQLRIKD DVPKTAFR RYGHYEFIVMSFGLTNAPAVFM
Subjt:  PWGAPILFVQKKDGLMRLCIDYRVLNKAIIKNRYPLPRIDDLFDQLQGATVFSKIDLRSEYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPAVFM

Query:  DLMNKVFREFLNTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKEVSFLGQVVSKAGVSVDPAKIEAVTSWPRPSTGSEVRSFL
        DLMN+VFREFL+TFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKF KCEFWLK+VSFLG VVSKAGVSVDPAKIEAVT W RPST SEVRSFL
Subjt:  DLMNKVFREFLNTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKEVSFLGQVVSKAGVSVDPAKIEAVTSWPRPSTGSEVRSFL

Query:  GLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFLIYSDAFKKGLGCVLMQQGKVVAYASR
        GLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSF+IYSDA KKGLGCVLMQQGKVVAYASR
Subjt:  GLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFLIYSDAFKKGLGCVLMQQGKVVAYASR

KAA0047433.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.5e-20692.54Show/hide
Query:  MRASKLLNQGTWSILASVVDTREVDVSLSSELVVRDYPDVFPEELPELPPHREIEFAIELEPGTIPISRAPYRMAPTELKEFKVQLQELLDKGFIRPSVS
        +RASKLL+QGTW ILASVVDTREVDVSLSSE VVRDYPDVFPEELP LPPHRE+EFAIELEPGT+PISRAPYRMAP ELKE KVQLQELLDKGFIRPSVS
Subjt:  MRASKLLNQGTWSILASVVDTREVDVSLSSELVVRDYPDVFPEELPELPPHREIEFAIELEPGTIPISRAPYRMAPTELKEFKVQLQELLDKGFIRPSVS

Query:  PWGAPILFVQKKDGLMRLCIDYRVLNKAIIKNRYPLPRIDDLFDQLQGATVFSKIDLRSEYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPAVFM
        PWGAP+LFV+KKDG MRLCIDYR LNK  +KNRYPLPRIDDLFDQLQGATVFSKIDLRS YHQLRIKDGDVPKTAFR RYGHYEFIVMSFGLTNAPAVFM
Subjt:  PWGAPILFVQKKDGLMRLCIDYRVLNKAIIKNRYPLPRIDDLFDQLQGATVFSKIDLRSEYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPAVFM

Query:  DLMNKVFREFLNTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKEVSFLGQVVSKAGVSVDPAKIEAVTSWPRPSTGSEVRSFL
        DLMN+VFREFL+TFVIVFIDDILIYSKTE EHEEHLR+VLQTLRDNKLYAKFSKCEFWLK+VSFLG VVSKAGVSVDPAKIEAVT W RPST SEVRSFL
Subjt:  DLMNKVFREFLNTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKEVSFLGQVVSKAGVSVDPAKIEAVTSWPRPSTGSEVRSFL

Query:  GLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFLIYSDAFKKGLGCVLMQQGKVVAYASR
        GLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSF+IYSDA KKGLGCVLMQQGKVVAYASR
Subjt:  GLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFLIYSDAFKKGLGCVLMQQGKVVAYASR

KAA0048687.1 pol protein [Cucumis melo var. makuwa]2.1e-20592.29Show/hide
Query:  MRASKLLNQGTWSILASVVDTREVDVSLSSELVVRDYPDVFPEELPELPPHREIEFAIELEPGTIPISRAPYRMAPTELKEFKVQLQELLDKGFIRPSVS
        +RASKLL+QGTW ILASVVDTRE DVSLSSE VVRDYPDVFPEELP LPPHRE+EFAIELEPGT+PISRAPYRMAP ELKE KVQLQELLDKGFIRPSVS
Subjt:  MRASKLLNQGTWSILASVVDTREVDVSLSSELVVRDYPDVFPEELPELPPHREIEFAIELEPGTIPISRAPYRMAPTELKEFKVQLQELLDKGFIRPSVS

Query:  PWGAPILFVQKKDGLMRLCIDYRVLNKAIIKNRYPLPRIDDLFDQLQGATVFSKIDLRSEYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPAVFM
        PWGAP+LFV+KKDG MRLCIDYR LNK  +KNRYPLPRIDDLFDQLQGATVFSKIDLRS YHQLRIKD DVPKTAFR RYGHYEFIVMSFGLTNAPAVFM
Subjt:  PWGAPILFVQKKDGLMRLCIDYRVLNKAIIKNRYPLPRIDDLFDQLQGATVFSKIDLRSEYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPAVFM

Query:  DLMNKVFREFLNTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKEVSFLGQVVSKAGVSVDPAKIEAVTSWPRPSTGSEVRSFL
        DLMN+VFREFL+TFVIVFIDDILIYSKTE EHEEHLRMVLQTLRDNKLYAKFSKCEFWLK+VSFLG VVSKAGVSVDPAKIEAVT W RPST SEVRSFL
Subjt:  DLMNKVFREFLNTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKEVSFLGQVVSKAGVSVDPAKIEAVTSWPRPSTGSEVRSFL

Query:  GLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFLIYSDAFKKGLGCVLMQQGKVVAYASR
        GLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSF+IYSDA KKGLGCVLMQQGKVVAYASR
Subjt:  GLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFLIYSDAFKKGLGCVLMQQGKVVAYASR

TYK01613.1 pol protein [Cucumis melo var. makuwa]1.0e-20492.03Show/hide
Query:  MRASKLLNQGTWSILASVVDTREVDVSLSSELVVRDYPDVFPEELPELPPHREIEFAIELEPGTIPISRAPYRMAPTELKEFKVQLQELLDKGFIRPSVS
        +RASKLL+QGTW ILASVVDTRE DVSLSSE VVRDYPDVFPEELP LPPHRE+EFAIELEPGT+PISRAPYRMAP ELKE KVQLQELLDKGFIRPSVS
Subjt:  MRASKLLNQGTWSILASVVDTREVDVSLSSELVVRDYPDVFPEELPELPPHREIEFAIELEPGTIPISRAPYRMAPTELKEFKVQLQELLDKGFIRPSVS

Query:  PWGAPILFVQKKDGLMRLCIDYRVLNKAIIKNRYPLPRIDDLFDQLQGATVFSKIDLRSEYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPAVFM
        PWGAP+LFV+KKDG MRLCIDYR LNK  +KNRYPLPRIDDLFDQLQGATVFSKIDLRS YHQLRIKD DVPKTAFR RYGHYEFIVMSFGLTNAPAVFM
Subjt:  PWGAPILFVQKKDGLMRLCIDYRVLNKAIIKNRYPLPRIDDLFDQLQGATVFSKIDLRSEYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPAVFM

Query:  DLMNKVFREFLNTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKEVSFLGQVVSKAGVSVDPAKIEAVTSWPRPSTGSEVRSFL
        DLMN+VFREFL+TFVIVFIDDILIYSKTE EHEEHLRMVLQTLRDNKLYAKFSKCEFWLK+VSFLG VVSKAGVSVDPAKIEAVT W RPST SEVRSFL
Subjt:  DLMNKVFREFLNTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKEVSFLGQVVSKAGVSVDPAKIEAVTSWPRPSTGSEVRSFL

Query:  GLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFLIYSDAFKKGLGCVLMQQGKVVAYASR
        GLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQ LKQKLVTAPVLTVPDGSGSF+IYSDA KKGLGCVLMQQGKVVAYASR
Subjt:  GLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFLIYSDAFKKGLGCVLMQQGKVVAYASR

TrEMBL top hitse value%identityAlignment
A0A5A7T190 Reverse transcriptase3.0e-20592.29Show/hide
Query:  MRASKLLNQGTWSILASVVDTREVDVSLSSELVVRDYPDVFPEELPELPPHREIEFAIELEPGTIPISRAPYRMAPTELKEFKVQLQELLDKGFIRPSVS
        +RASKLL+QGTW ILASVVDTREVDVSLS E VVRDYPDVFPEELP LPPHRE+EFAIELEPGT+PISRAPYRMAP ELKE KVQLQELLDKGFIRPSVS
Subjt:  MRASKLLNQGTWSILASVVDTREVDVSLSSELVVRDYPDVFPEELPELPPHREIEFAIELEPGTIPISRAPYRMAPTELKEFKVQLQELLDKGFIRPSVS

Query:  PWGAPILFVQKKDGLMRLCIDYRVLNKAIIKNRYPLPRIDDLFDQLQGATVFSKIDLRSEYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPAVFM
        PWGAP+LFV+KKDG MRLCIDYR LNK  +KNRYPLPRIDDLFDQLQGATVFSKIDLRS YHQLRIKD DVPKTAFR RYGHYEFIVMSFGLTNAPAVFM
Subjt:  PWGAPILFVQKKDGLMRLCIDYRVLNKAIIKNRYPLPRIDDLFDQLQGATVFSKIDLRSEYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPAVFM

Query:  DLMNKVFREFLNTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKEVSFLGQVVSKAGVSVDPAKIEAVTSWPRPSTGSEVRSFL
        DLMN+VFREFL+TFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKF KCEFWLK+VSFLG VVSKAGVSVDPAKIEAVT W RPST SEVRSFL
Subjt:  DLMNKVFREFLNTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKEVSFLGQVVSKAGVSVDPAKIEAVTSWPRPSTGSEVRSFL

Query:  GLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFLIYSDAFKKGLGCVLMQQGKVVAYASR
        GLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSF+IYSDA KKGLGCVLMQQGKVVAYASR
Subjt:  GLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFLIYSDAFKKGLGCVLMQQGKVVAYASR

A0A5A7TV57 Ty3-gypsy retrotransposon protein1.2e-20692.54Show/hide
Query:  MRASKLLNQGTWSILASVVDTREVDVSLSSELVVRDYPDVFPEELPELPPHREIEFAIELEPGTIPISRAPYRMAPTELKEFKVQLQELLDKGFIRPSVS
        +RASKLL+QGTW ILASVVDTREVDVSLSSE VVRDYPDVFPEELP LPPHRE+EFAIELEPGT+PISRAPYRMAP ELKE KVQLQELLDKGFIRPSVS
Subjt:  MRASKLLNQGTWSILASVVDTREVDVSLSSELVVRDYPDVFPEELPELPPHREIEFAIELEPGTIPISRAPYRMAPTELKEFKVQLQELLDKGFIRPSVS

Query:  PWGAPILFVQKKDGLMRLCIDYRVLNKAIIKNRYPLPRIDDLFDQLQGATVFSKIDLRSEYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPAVFM
        PWGAP+LFV+KKDG MRLCIDYR LNK  +KNRYPLPRIDDLFDQLQGATVFSKIDLRS YHQLRIKDGDVPKTAFR RYGHYEFIVMSFGLTNAPAVFM
Subjt:  PWGAPILFVQKKDGLMRLCIDYRVLNKAIIKNRYPLPRIDDLFDQLQGATVFSKIDLRSEYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPAVFM

Query:  DLMNKVFREFLNTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKEVSFLGQVVSKAGVSVDPAKIEAVTSWPRPSTGSEVRSFL
        DLMN+VFREFL+TFVIVFIDDILIYSKTE EHEEHLR+VLQTLRDNKLYAKFSKCEFWLK+VSFLG VVSKAGVSVDPAKIEAVT W RPST SEVRSFL
Subjt:  DLMNKVFREFLNTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKEVSFLGQVVSKAGVSVDPAKIEAVTSWPRPSTGSEVRSFL

Query:  GLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFLIYSDAFKKGLGCVLMQQGKVVAYASR
        GLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSF+IYSDA KKGLGCVLMQQGKVVAYASR
Subjt:  GLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFLIYSDAFKKGLGCVLMQQGKVVAYASR

A0A5A7U330 Reverse transcriptase1.0e-20592.29Show/hide
Query:  MRASKLLNQGTWSILASVVDTREVDVSLSSELVVRDYPDVFPEELPELPPHREIEFAIELEPGTIPISRAPYRMAPTELKEFKVQLQELLDKGFIRPSVS
        +RASKLL+QGTW ILASVVDTRE DVSLSSE VVRDYPDVFPEELP LPPHRE+EFAIELEPGT+PISRAPYRMAP ELKE KVQLQELLDKGFIRPSVS
Subjt:  MRASKLLNQGTWSILASVVDTREVDVSLSSELVVRDYPDVFPEELPELPPHREIEFAIELEPGTIPISRAPYRMAPTELKEFKVQLQELLDKGFIRPSVS

Query:  PWGAPILFVQKKDGLMRLCIDYRVLNKAIIKNRYPLPRIDDLFDQLQGATVFSKIDLRSEYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPAVFM
        PWGAP+LFV+KKDG MRLCIDYR LNK  +KNRYPLPRIDDLFDQLQGATVFSKIDLRS YHQLRIKD DVPKTAFR RYGHYEFIVMSFGLTNAPAVFM
Subjt:  PWGAPILFVQKKDGLMRLCIDYRVLNKAIIKNRYPLPRIDDLFDQLQGATVFSKIDLRSEYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPAVFM

Query:  DLMNKVFREFLNTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKEVSFLGQVVSKAGVSVDPAKIEAVTSWPRPSTGSEVRSFL
        DLMN+VFREFL+TFVIVFIDDILIYSKTE EHEEHLRMVLQTLRDNKLYAKFSKCEFWLK+VSFLG VVSKAGVSVDPAKIEAVT W RPST SEVRSFL
Subjt:  DLMNKVFREFLNTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKEVSFLGQVVSKAGVSVDPAKIEAVTSWPRPSTGSEVRSFL

Query:  GLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFLIYSDAFKKGLGCVLMQQGKVVAYASR
        GLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSF+IYSDA KKGLGCVLMQQGKVVAYASR
Subjt:  GLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFLIYSDAFKKGLGCVLMQQGKVVAYASR

A0A5A7V4L7 Ty3-gypsy retrotransposon protein1.1e-20491.77Show/hide
Query:  MRASKLLNQGTWSILASVVDTREVDVSLSSELVVRDYPDVFPEELPELPPHREIEFAIELEPGTIPISRAPYRMAPTELKEFKVQLQELLDKGFIRPSVS
        +RASKLL+QGTW ILASVVDTREVDVSLSSE VVRDYPDVFPEELP LPPHRE+EFAIELEPGT+PISRAPYRMAP E+KE KVQLQELLDKGFIRPSVS
Subjt:  MRASKLLNQGTWSILASVVDTREVDVSLSSELVVRDYPDVFPEELPELPPHREIEFAIELEPGTIPISRAPYRMAPTELKEFKVQLQELLDKGFIRPSVS

Query:  PWGAPILFVQKKDGLMRLCIDYRVLNKAIIKNRYPLPRIDDLFDQLQGATVFSKIDLRSEYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPAVFM
        PWGAP+LFV+KKDG MRLCIDYR LNK  +KNRYPLPRIDDLFDQLQGATVFSKIDLRS YHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPAVFM
Subjt:  PWGAPILFVQKKDGLMRLCIDYRVLNKAIIKNRYPLPRIDDLFDQLQGATVFSKIDLRSEYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPAVFM

Query:  DLMNKVFREFLNTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKEVSFLGQVVSKAGVSVDPAKIEAVTSWPRPSTGSEVRSFL
        DLMN+VFREFL+TFVIVFIDDILIYSKTE EHEEHLR+VLQTLRDNKLYAKFSKCEFWLK+VSFLG VVSKAGVSVDPAKIEAVT W RPST SEVRSFL
Subjt:  DLMNKVFREFLNTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKEVSFLGQVVSKAGVSVDPAKIEAVTSWPRPSTGSEVRSFL

Query:  GLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFLIYSDAFKKGLGCVLMQQGKVVAYASR
         LAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTV DGSGSF+IYS+A KKGLGCVLMQQGKVVAYASR
Subjt:  GLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFLIYSDAFKKGLGCVLMQQGKVVAYASR

A0A5D3BPI1 Reverse transcriptase5.1e-20592.03Show/hide
Query:  MRASKLLNQGTWSILASVVDTREVDVSLSSELVVRDYPDVFPEELPELPPHREIEFAIELEPGTIPISRAPYRMAPTELKEFKVQLQELLDKGFIRPSVS
        +RASKLL+QGTW ILASVVDTRE DVSLSSE VVRDYPDVFPEELP LPPHRE+EFAIELEPGT+PISRAPYRMAP ELKE KVQLQELLDKGFIRPSVS
Subjt:  MRASKLLNQGTWSILASVVDTREVDVSLSSELVVRDYPDVFPEELPELPPHREIEFAIELEPGTIPISRAPYRMAPTELKEFKVQLQELLDKGFIRPSVS

Query:  PWGAPILFVQKKDGLMRLCIDYRVLNKAIIKNRYPLPRIDDLFDQLQGATVFSKIDLRSEYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPAVFM
        PWGAP+LFV+KKDG MRLCIDYR LNK  +KNRYPLPRIDDLFDQLQGATVFSKIDLRS YHQLRIKD DVPKTAFR RYGHYEFIVMSFGLTNAPAVFM
Subjt:  PWGAPILFVQKKDGLMRLCIDYRVLNKAIIKNRYPLPRIDDLFDQLQGATVFSKIDLRSEYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPAVFM

Query:  DLMNKVFREFLNTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKEVSFLGQVVSKAGVSVDPAKIEAVTSWPRPSTGSEVRSFL
        DLMN+VFREFL+TFVIVFIDDILIYSKTE EHEEHLRMVLQTLRDNKLYAKFSKCEFWLK+VSFLG VVSKAGVSVDPAKIEAVT W RPST SEVRSFL
Subjt:  DLMNKVFREFLNTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKEVSFLGQVVSKAGVSVDPAKIEAVTSWPRPSTGSEVRSFL

Query:  GLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFLIYSDAFKKGLGCVLMQQGKVVAYASR
        GLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQ LKQKLVTAPVLTVPDGSGSF+IYSDA KKGLGCVLMQQGKVVAYASR
Subjt:  GLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFLIYSDAFKKGLGCVLMQQGKVVAYASR

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.63.2e-6338.92Show/hide
Query:  KEFKVQLQELLDKGFIRPSVSPWGAPILFVQKKDGL-----MRLCIDYRVLNKAIIKNRYPLPRIDDLFDQLQGATVFSKIDLRSEYHQLRIKDGDVPKT
        +E + Q+Q++L++G IR S SP+ +PI  V KK         R+ IDYR LN+  + +R+P+P +D++  +L     F+ IDL   +HQ+ +    V KT
Subjt:  KEFKVQLQELLDKGFIRPSVSPWGAPILFVQKKDGL-----MRLCIDYRVLNKAIIKNRYPLPRIDDLFDQLQGATVFSKIDLRSEYHQLRIKDGDVPKT

Query:  AFRFRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLNTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKEVSFLGQVVSKAGV
        AF  ++GHYE++ M FGL NAPA F   MN + R  LN   +V++DDI+++S +  EH + L +V + L    L  +  KCEF  +E +FLG V++  G+
Subjt:  AFRFRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLNTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKEVSFLGQVVSKAGV

Query:  SVDPAKIEAVTSWPRPSTGSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDS-FQNLKQKLVTAPVLTVPDGSGSFLIYSDAFKKGL
          +P KIEA+  +P P+   E+++FLGL GYYR+F+ NF+ IA P+T+  +K      +    DS F+ LK  +   P+L VPD +  F + +DA    L
Subjt:  SVDPAKIEAVTSWPRPSTGSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDS-FQNLKQKLVTAPVLTVPDGSGSFLIYSDAFKKGL

Query:  GCVLMQQGKVVAYASR
        G VL Q G  ++Y SR
Subjt:  GCVLMQQGKVVAYASR

P0CT34 Transposon Tf2-1 polyprotein7.1e-6335.71Show/hide
Query:  VVRDYPDVFPEELPE-LP-PHREIEFAIELEPGTIPISRAPYRMAPTELKEFKVQLQELLDKGFIRPSVSPWGAPILFVQKKDGLMRLCIDYRVLNKAII
        + +++ D+  E   E LP P + +EF +EL      +    Y + P +++    ++ + L  G IR S +    P++FV KK+G +R+ +DY+ LNK + 
Subjt:  VVRDYPDVFPEELPE-LP-PHREIEFAIELEPGTIPISRAPYRMAPTELKEFKVQLQELLDKGFIRPSVSPWGAPILFVQKKDGLMRLCIDYRVLNKAII

Query:  KNRYPLPRIDDLFDQLQGATVFSKIDLRSEYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLNTFVIVFIDDILIYSKTEV
         N YPLP I+ L  ++QG+T+F+K+DL+S YH +R++ GD  K AFR   G +E++VM +G++ APA F   +N +  E   + V+ ++DDILI+SK+E 
Subjt:  KNRYPLPRIDDLFDQLQGATVFSKIDLRSEYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLNTFVIVFIDDILIYSKTEV

Query:  EHEEHLRMVLQTLRDNKLYAKFSKCEFWLKEVSFLGQVVSKAGVSVDPAKIEAVTSWPRPSTGSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPF
        EH +H++ VLQ L++  L    +KCEF   +V F+G  +S+ G +     I+ V  W +P    E+R FLG   Y R+F+   S++  PL  L +K   +
Subjt:  EHEEHLRMVLQTLRDNKLYAKFSKCEFWLKEVSFLGQVVSKAGVSVDPAKIEAVTSWPRPSTGSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPF

Query:  VWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFLIYSDAFKKGLGCVLMQQ
         W+     + +N+KQ LV+ PVL   D S   L+ +DA    +G VL Q+
Subjt:  VWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFLIYSDAFKKGLGCVLMQQ

P0CT35 Transposon Tf2-2 polyprotein7.1e-6335.71Show/hide
Query:  VVRDYPDVFPEELPE-LP-PHREIEFAIELEPGTIPISRAPYRMAPTELKEFKVQLQELLDKGFIRPSVSPWGAPILFVQKKDGLMRLCIDYRVLNKAII
        + +++ D+  E   E LP P + +EF +EL      +    Y + P +++    ++ + L  G IR S +    P++FV KK+G +R+ +DY+ LNK + 
Subjt:  VVRDYPDVFPEELPE-LP-PHREIEFAIELEPGTIPISRAPYRMAPTELKEFKVQLQELLDKGFIRPSVSPWGAPILFVQKKDGLMRLCIDYRVLNKAII

Query:  KNRYPLPRIDDLFDQLQGATVFSKIDLRSEYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLNTFVIVFIDDILIYSKTEV
         N YPLP I+ L  ++QG+T+F+K+DL+S YH +R++ GD  K AFR   G +E++VM +G++ APA F   +N +  E   + V+ ++DDILI+SK+E 
Subjt:  KNRYPLPRIDDLFDQLQGATVFSKIDLRSEYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLNTFVIVFIDDILIYSKTEV

Query:  EHEEHLRMVLQTLRDNKLYAKFSKCEFWLKEVSFLGQVVSKAGVSVDPAKIEAVTSWPRPSTGSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPF
        EH +H++ VLQ L++  L    +KCEF   +V F+G  +S+ G +     I+ V  W +P    E+R FLG   Y R+F+   S++  PL  L +K   +
Subjt:  EHEEHLRMVLQTLRDNKLYAKFSKCEFWLKEVSFLGQVVSKAGVSVDPAKIEAVTSWPRPSTGSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPF

Query:  VWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFLIYSDAFKKGLGCVLMQQ
         W+     + +N+KQ LV+ PVL   D S   L+ +DA    +G VL Q+
Subjt:  VWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFLIYSDAFKKGLGCVLMQQ

P0CT41 Transposon Tf2-12 polyprotein7.1e-6335.71Show/hide
Query:  VVRDYPDVFPEELPE-LP-PHREIEFAIELEPGTIPISRAPYRMAPTELKEFKVQLQELLDKGFIRPSVSPWGAPILFVQKKDGLMRLCIDYRVLNKAII
        + +++ D+  E   E LP P + +EF +EL      +    Y + P +++    ++ + L  G IR S +    P++FV KK+G +R+ +DY+ LNK + 
Subjt:  VVRDYPDVFPEELPE-LP-PHREIEFAIELEPGTIPISRAPYRMAPTELKEFKVQLQELLDKGFIRPSVSPWGAPILFVQKKDGLMRLCIDYRVLNKAII

Query:  KNRYPLPRIDDLFDQLQGATVFSKIDLRSEYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLNTFVIVFIDDILIYSKTEV
         N YPLP I+ L  ++QG+T+F+K+DL+S YH +R++ GD  K AFR   G +E++VM +G++ APA F   +N +  E   + V+ ++DDILI+SK+E 
Subjt:  KNRYPLPRIDDLFDQLQGATVFSKIDLRSEYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLNTFVIVFIDDILIYSKTEV

Query:  EHEEHLRMVLQTLRDNKLYAKFSKCEFWLKEVSFLGQVVSKAGVSVDPAKIEAVTSWPRPSTGSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPF
        EH +H++ VLQ L++  L    +KCEF   +V F+G  +S+ G +     I+ V  W +P    E+R FLG   Y R+F+   S++  PL  L +K   +
Subjt:  EHEEHLRMVLQTLRDNKLYAKFSKCEFWLKEVSFLGQVVSKAGVSVDPAKIEAVTSWPRPSTGSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPF

Query:  VWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFLIYSDAFKKGLGCVLMQQ
         W+     + +N+KQ LV+ PVL   D S   L+ +DA    +G VL Q+
Subjt:  VWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFLIYSDAFKKGLGCVLMQQ

P20825 Retrovirus-related Pol polyprotein from transposon 2974.0e-6638.48Show/hide
Query:  PISRAPYRMAPTELKEFKVQLQELLDKGFIRPSVSPWGAPILFVQKKD-----GLMRLCIDYRVLNKAIIKNRYPLPRIDDLFDQLQGATVFSKIDLRSE
        PI    Y +A T   E + Q+QE+L++G IR S SP+ +P   V KK         R+ IDYR LN+  I +RYP+P +D++  +L     F+ IDL   
Subjt:  PISRAPYRMAPTELKEFKVQLQELLDKGFIRPSVSPWGAPILFVQKKD-----GLMRLCIDYRVLNKAIIKNRYPLPRIDDLFDQLQGATVFSKIDLRSE

Query:  YHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLNTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLK
        +HQ+ + +  + KTAF  + GHYE++ M FGL NAPA F   MN + R  LN   +V++DDI+I+S +  EH   +++V   L D  L  +  KCEF  K
Subjt:  YHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLNTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLK

Query:  EVSFLGQVVSKAGVSVDPAKIEAVTSWPRPSTGSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSK-ACEDSFQNLKQKLVTAPVLTVPDGS
        E +FLG +V+  G+  +P K++A+ S+P P+   E+R+FLGL GYYR+F+ N++ IA P+T   +K       K    ++F+ LK  ++  P+L +PD  
Subjt:  EVSFLGQVVSKAGVSVDPAKIEAVTSWPRPSTGSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSK-ACEDSFQNLKQKLVTAPVLTVPDGS

Query:  GSFLIYSDAFKKGLGCVLMQQGKVVAYASR
          F++ +DA    LG VL Q G  +++ SR
Subjt:  GSFLIYSDAFKKGLGCVLMQQGKVVAYASR

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein1.9e-2644.8Show/hide
Query:  HLRMVLQTLRDNKLYAKFSKCEFWLKEVSFLG--QVVSKAGVSVDPAKIEAVTSWPRPSTGSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVW
        HL MVLQ    ++ YA   KC F   ++++LG   ++S  GVS DPAK+EA+  WP P   +E+R FLGL GYYRRFV+N+ +I  PLT+L +K +   W
Subjt:  HLRMVLQTLRDNKLYAKFSKCEFWLKEVSFLG--QVVSKAGVSVDPAKIEAVTSWPRPSTGSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVW

Query:  SKACEDSFQNLKQKLVTAPVLTVPD
        ++    +F+ LK  + T PVL +PD
Subjt:  SKACEDSFQNLKQKLVTAPVLTVPD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGCCAGCAAACTGCTTAATCAGGGTACTTGGAGTATCTTAGCAAGCGTGGTGGATACTAGAGAGGTTGATGTATCTCTGTCATCAGAACTAGTGGTAAGGGACTA
TCCGGATGTCTTTCCTGAAGAACTTCCAGAGTTACCTCCTCACAGAGAGATTGAGTTTGCCATAGAGCTGGAGCCGGGCACGATTCCTATATCCAGAGCCCCATACAGAA
TGGCCCCAACAGAATTGAAAGAATTTAAGGTGCAGTTACAGGAATTACTTGATAAGGGCTTCATTCGACCGAGTGTGTCACCTTGGGGTGCGCCAATTTTATTTGTTCAG
AAGAAGGATGGATTGATGCGCCTATGTATTGACTATAGGGTGTTGAATAAGGCAATCATTAAGAACAGATATCCCTTGCCCAGGATCGATGACCTGTTTGACCAGTTACA
GGGAGCTACAGTGTTCTCTAAGATTGATCTTCGATCGGAATATCATCAGCTGAGGATTAAGGATGGTGATGTACCGAAGACGGCCTTTCGTTTCAGATACGGACACTATG
AGTTCATTGTGATGTCTTTTGGTTTGACGAATGCTCCAGCAGTGTTTATGGACTTGATGAACAAAGTGTTTAGGGAGTTCCTAAACACTTTTGTGATCGTGTTTATTGAT
GATATCTTGATATATTCCAAGACAGAGGTCGAGCATGAGGAGCATTTACGTATGGTTCTACAAACCCTTCGGGATAATAAATTGTATGCAAAGTTCTCAAAATGTGAGTT
TTGGCTGAAAGAGGTGTCCTTTCTAGGCCAGGTGGTTTCTAAGGCTGGAGTTTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCAGTTGGCCCCGACCTTCCACAGGCA
GTGAGGTTCGTAGCTTTCTGGGTTTAGCAGGTTATTATCGACGATTTGTGGAGAACTTTTCCCGTATAGCTACTCCTCTTACTCAGTTGACTAGGAAGGGAGCTCCTTTT
GTATGGAGCAAGGCATGTGAGGACAGTTTCCAGAACCTTAAACAGAAGCTAGTTACTGCACCGGTTCTTACTGTACCTGATGGTTCAGGCAGTTTTTTGATTTACAGTGA
TGCTTTTAAGAAGGGTTTGGGTTGTGTATTGATGCAGCAAGGTAAGGTAGTCGCTTATGCTTCTCGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGGCCAGCAAACTGCTTAATCAGGGTACTTGGAGTATCTTAGCAAGCGTGGTGGATACTAGAGAGGTTGATGTATCTCTGTCATCAGAACTAGTGGTAAGGGACTA
TCCGGATGTCTTTCCTGAAGAACTTCCAGAGTTACCTCCTCACAGAGAGATTGAGTTTGCCATAGAGCTGGAGCCGGGCACGATTCCTATATCCAGAGCCCCATACAGAA
TGGCCCCAACAGAATTGAAAGAATTTAAGGTGCAGTTACAGGAATTACTTGATAAGGGCTTCATTCGACCGAGTGTGTCACCTTGGGGTGCGCCAATTTTATTTGTTCAG
AAGAAGGATGGATTGATGCGCCTATGTATTGACTATAGGGTGTTGAATAAGGCAATCATTAAGAACAGATATCCCTTGCCCAGGATCGATGACCTGTTTGACCAGTTACA
GGGAGCTACAGTGTTCTCTAAGATTGATCTTCGATCGGAATATCATCAGCTGAGGATTAAGGATGGTGATGTACCGAAGACGGCCTTTCGTTTCAGATACGGACACTATG
AGTTCATTGTGATGTCTTTTGGTTTGACGAATGCTCCAGCAGTGTTTATGGACTTGATGAACAAAGTGTTTAGGGAGTTCCTAAACACTTTTGTGATCGTGTTTATTGAT
GATATCTTGATATATTCCAAGACAGAGGTCGAGCATGAGGAGCATTTACGTATGGTTCTACAAACCCTTCGGGATAATAAATTGTATGCAAAGTTCTCAAAATGTGAGTT
TTGGCTGAAAGAGGTGTCCTTTCTAGGCCAGGTGGTTTCTAAGGCTGGAGTTTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCAGTTGGCCCCGACCTTCCACAGGCA
GTGAGGTTCGTAGCTTTCTGGGTTTAGCAGGTTATTATCGACGATTTGTGGAGAACTTTTCCCGTATAGCTACTCCTCTTACTCAGTTGACTAGGAAGGGAGCTCCTTTT
GTATGGAGCAAGGCATGTGAGGACAGTTTCCAGAACCTTAAACAGAAGCTAGTTACTGCACCGGTTCTTACTGTACCTGATGGTTCAGGCAGTTTTTTGATTTACAGTGA
TGCTTTTAAGAAGGGTTTGGGTTGTGTATTGATGCAGCAAGGTAAGGTAGTCGCTTATGCTTCTCGTTAG
Protein sequenceShow/hide protein sequence
MRASKLLNQGTWSILASVVDTREVDVSLSSELVVRDYPDVFPEELPELPPHREIEFAIELEPGTIPISRAPYRMAPTELKEFKVQLQELLDKGFIRPSVSPWGAPILFVQ
KKDGLMRLCIDYRVLNKAIIKNRYPLPRIDDLFDQLQGATVFSKIDLRSEYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLNTFVIVFID
DILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKEVSFLGQVVSKAGVSVDPAKIEAVTSWPRPSTGSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPF
VWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFLIYSDAFKKGLGCVLMQQGKVVAYASR