CuGenDBv2

Gene ID	Cmc12g0321771
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	50S ribosomal protein L16, chloroplastic
Genome location	CMiso1.1chr12:8775911..8776159
RNA-Seq Expression	Cmc12g0321771
Synteny	Cmc12g0321771
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR000114 - Ribosomal protein L16 IPR016180 - Ribosomal protein L10e/L16 IPR036920 - Ribosomal protein L10e/L16 superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

ABI97454.1 ribosomal protein L16, partial [Cucumis sativus]

9.1e-34

95.12

Show/hide

Query:  MTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYLVAVVKPGRILYEMSGVAENIARKAISIAASKMLIRTQFITLG
        MTRNARRGGKIWVRIF DKPVTLRPTETRMGSGKGSPEY VAVVKPGRILYEMSGVAENIARKAISIAASKM IRTQFIT G
Subjt:  MTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYLVAVVKPGRILYEMSGVAENIARKAISIAASKMLIRTQFITLG

ASY96370.1 ribosomal protein L16 [Cucumis melo subsp. agrestis]

9.1e-34

95.12

Show/hide

Query:  MTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYLVAVVKPGRILYEMSGVAENIARKAISIAASKMLIRTQFITLG
        MTRNARRGGKIWVRIF DKPVTLRPTETRMGSGKGSPEY VAVVKPGRILYEMSGVAENIARKAISIAASKM IRTQFIT G
Subjt:  MTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYLVAVVKPGRILYEMSGVAENIARKAISIAASKMLIRTQFITLG

YP_004841821.1 ribosomal protein L16 [Cucumis melo subsp. melo]

9.1e-34

95.12

Show/hide

Query:  MTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYLVAVVKPGRILYEMSGVAENIARKAISIAASKMLIRTQFITLG
        MTRNARRGGKIWVRIF DKPVTLRPTETRMGSGKGSPEY VAVVKPGRILYEMSGVAENIARKAISIAASKM IRTQFIT G
Subjt:  MTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYLVAVVKPGRILYEMSGVAENIARKAISIAASKMLIRTQFITLG

YP_009326027.1 ribosomal protein L16 [Citrullus lanatus]

9.1e-34

95.12

Show/hide

Query:  MTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYLVAVVKPGRILYEMSGVAENIARKAISIAASKMLIRTQFITLG
        MTRNARRGGKIWVRIF DKPVTLRPTETRMGSGKGSPEY VAVVKPGRILYEMSGVAENIARKAISIAASKM IRTQFIT G
Subjt:  MTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYLVAVVKPGRILYEMSGVAENIARKAISIAASKMLIRTQFITLG

YP_009752872.1 ribosomal protein L16 [Baijiania yunnanensis]

5.3e-34

95.12

Show/hide

Query:  MTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYLVAVVKPGRILYEMSGVAENIARKAISIAASKMLIRTQFITLG
        MTRNARRGGKIWVRIF DKPVTLRPTETRMGSGKGSPEY VAVVKPGRILYEM GVAENIARKAISIAASKM IRTQFITLG
Subjt:  MTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYLVAVVKPGRILYEMSGVAENIARKAISIAASKMLIRTQFITLG

TrEMBL top hits

e value

%identity

Alignment

A0A1S4EU42 50S ribosomal protein L16, chloroplastic

4.4e-34

95.12

Show/hide

Query:  MTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYLVAVVKPGRILYEMSGVAENIARKAISIAASKMLIRTQFITLG
        MTRNARRGGKIWVRIF DKPVTLRPTETRMGSGKGSPEY VAVVKPGRILYEMSGVAENIARKAISIAASKM IRTQFIT G
Subjt:  MTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYLVAVVKPGRILYEMSGVAENIARKAISIAASKMLIRTQFITLG

A0A1X9Q1F7 50S ribosomal protein L16, chloroplastic (Fragment)

4.4e-34

95.12

Show/hide

Query:  MTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYLVAVVKPGRILYEMSGVAENIARKAISIAASKMLIRTQFITLG
        MTRNARRGGKIWVRIF DKPVTLRPTETRMGSGKGSPEY VAVVKPGRILYEMSGVAENIARKAISIAASKM IRTQFIT G
Subjt:  MTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYLVAVVKPGRILYEMSGVAENIARKAISIAASKMLIRTQFITLG

A0A218KG73 50S ribosomal protein L16, chloroplastic

4.4e-34

95.12

Show/hide

Query:  MTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYLVAVVKPGRILYEMSGVAENIARKAISIAASKMLIRTQFITLG
        MTRNARRGGKIWVRIF DKPVTLRPTETRMGSGKGSPEY VAVVKPGRILYEMSGVAENIARKAISIAASKM IRTQFIT G
Subjt:  MTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYLVAVVKPGRILYEMSGVAENIARKAISIAASKMLIRTQFITLG

A0A249S030 50S ribosomal protein L16, chloroplastic

4.4e-34

95.12

Show/hide

Query:  MTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYLVAVVKPGRILYEMSGVAENIARKAISIAASKMLIRTQFITLG
        MTRNARRGGKIWVRIF DKPVTLRPTETRMGSGKGSPEY VAVVKPGRILYEMSGVAENIARKAISIAASKM IRTQFIT G
Subjt:  MTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYLVAVVKPGRILYEMSGVAENIARKAISIAASKMLIRTQFITLG

A0A6H0EW95 50S ribosomal protein L16, chloroplastic

2.6e-34

95.12

Show/hide

Query:  MTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYLVAVVKPGRILYEMSGVAENIARKAISIAASKMLIRTQFITLG
        MTRNARRGGKIWVRIF DKPVTLRPTETRMGSGKGSPEY VAVVKPGRILYEM GVAENIARKAISIAASKM IRTQFITLG
Subjt:  MTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYLVAVVKPGRILYEMSGVAENIARKAISIAASKMLIRTQFITLG

SwissProt top hits

e value

%identity

Alignment

B1A972 50S ribosomal protein L16, chloroplastic

1.1e-34

90.24

Show/hide

Query:  MTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYLVAVVKPGRILYEMSGVAENIARKAISIAASKMLIRTQFITLG
        MTRN RRGGKIWVRIF DKPVTLRPTETRMGSGKGSPEY VAVVKPGRILYEMSGVAENIAR+AISIAASKM I+TQFI  G
Subjt:  MTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYLVAVVKPGRILYEMSGVAENIARKAISIAASKMLIRTQFITLG

B1NWI7 50S ribosomal protein L16, chloroplastic

1.7e-35

92.68

Show/hide

Query:  MTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYLVAVVKPGRILYEMSGVAENIARKAISIAASKMLIRTQFITLG
        MTRNARRGGKIWVRIF DKPVTLRPTETRMGSGKGSPEY VAVVKPGRILYEM GVAENIARKAISIAASKM IRTQFI  G
Subjt:  MTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYLVAVVKPGRILYEMSGVAENIARKAISIAASKMLIRTQFITLG

Q09ME0 50S ribosomal protein L16, chloroplastic

1.7e-35

92.68

Show/hide

Query:  MTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYLVAVVKPGRILYEMSGVAENIARKAISIAASKMLIRTQFITLG
        MTRN RRGGKIWVRIF DKPVTLRPTETRMGSGKGSPEY VAVVKPGRILYEMSGVAENIARKAISIAASKM IRTQFI  G
Subjt:  MTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYLVAVVKPGRILYEMSGVAENIARKAISIAASKMLIRTQFITLG

Q2L940 50S ribosomal protein L16, chloroplastic

8.5e-35

90.24

Show/hide

Query:  MTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYLVAVVKPGRILYEMSGVAENIARKAISIAASKMLIRTQFITLG
        MTRN RRGGKIWVRIF DKPVT+RPTETRMGSGKGSPEY VAVVKPGRILYEMSGVAENIARKAISIAASKM I+TQFI  G
Subjt:  MTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYLVAVVKPGRILYEMSGVAENIARKAISIAASKMLIRTQFITLG

Q4VZN1 50S ribosomal protein L16, chloroplastic

1.2e-36

95.12

Show/hide

Query:  MTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYLVAVVKPGRILYEMSGVAENIARKAISIAASKMLIRTQFITLG
        MTRNARRGGKIWVRIF DKPVTLRPTETRMGSGKGSPEY VAVVKPGRILYEMSGVAENIARKAISIAASKM IRTQFIT G
Subjt:  MTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYLVAVVKPGRILYEMSGVAENIARKAISIAASKMLIRTQFITLG

Arabidopsis top hits

e value

%identity

Alignment

AT2G28830.1 PLANT U-BOX 12

7.0e-24

65.82

Show/hide

Query:  MTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYLVAVVKPGRILYEMSGVAENIARKAISIAASKMLIRTQFI
        MTRN  RG  + V IF+DKPVT+RP ETRMG GKG+P + VAVVKPG+I+YEM GV+E +AR+AISIAASK+  +T+FI
Subjt:  MTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYLVAVVKPGRILYEMSGVAENIARKAISIAASKMLIRTQFI

ATCG00790.1 ribosomal protein L16

1.3e-33

87.34

Show/hide

Query:  MTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYLVAVVKPGRILYEMSGVAENIARKAISIAASKMLIRTQFI
        MTRN RRGGKIWVRIF DKPVT+RP ETRMGSGKGSPEY VAVVKPG+ILYEM GV ENIARKAISIAASKM I+TQFI
Subjt:  MTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYLVAVVKPGRILYEMSGVAENIARKAISIAASKMLIRTQFI

ATMG00080.1 ribosomal protein L16

1.6e-15

49.37

Show/hide

Query:  MTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYLVAVVKPGRILYEMSGVAENIARKAISIAASKMLIRTQFI
        M+   RR GKIWVR+F+D P+T +PTE RMG GKG+P   +A V  G+I +EM GV+   AR+A ++AA K    T+F+
Subjt:  MTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYLVAVVKPGRILYEMSGVAENIARKAISIAASKMLIRTQFI

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGACACGAAATGCACGACGCGGTGGAAAAATATGGGTACGTATATTTTCGGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCC
CGAATATTTGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATGAAATGAGTGGAGTAGCCGAAAATATAGCCAGAAAAGCTATTTCAATAGCGGCATCCAAAATGCTTA
TACGAACCCAATTCATTACTTTGGGATAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYLVAVVKPGRILYEMSGVAENIARKAISIAASKMLIRTQFITLG

Cmc12g0321771 (gene) of Melon (Charmono) v1.1 genome