CuGenDBv2

Gene ID	Cmc12g0321801
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr12:8817584..8818216
RNA-Seq Expression	Cmc12g0321801
Synteny	Cmc12g0321801
Gene Ontology terms	NA
InterPro domains	IPR000477 - Reverse transcriptase domain IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0026271.1 pol protein [Cucumis melo var. makuwa]

3.8e-108

94.76

Show/hide

Query:  MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSW
        MSFGLTNAPAVF+DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W
Subjt:  MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSW

Query:  PRPSTVNEVCSFLGLAGYYRRFVKNFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSDASKKGFGCVSMQQGKLVAYA
         RPSTV+EV SFLGLAGYYRRFV+NFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAP+LTVPDGSGSFVIYSDASKKG GCV MQQGK+VAYA
Subjt:  PRPSTVNEVCSFLGLAGYYRRFVKNFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSDASKKGFGCVSMQQGKLVAYA

Query:  SRQLKSHEQN
        SRQLKSHEQN
Subjt:  SRQLKSHEQN

KAA0040698.1 pol protein [Cucumis melo var. makuwa]

3.8e-108

95.24

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Query:  MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSW
        MSFGLTNAPAVF+DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVD AKIEAVT W
Subjt:  MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSW

Query:  PRPSTVNEVCSFLGLAGYYRRFVKNFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSDASKKGFGCVSMQQGKLVAYA
         RPSTVNEV SFLGLAGYYRRFV+NFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAP+LTVPDGSGSFVIYSDASKKG GCV MQQGK+VAYA
Subjt:  PRPSTVNEVCSFLGLAGYYRRFVKNFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSDASKKGFGCVSMQQGKLVAYA

Query:  SRQLKSHEQN
        SRQLKSHEQN
Subjt:  SRQLKSHEQN

KAA0042119.1 pol protein [Cucumis melo var. makuwa]

7.6e-109

95.71

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Query:  MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSW
        MSFGLTNAPAVF+DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSW
Subjt:  MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSW

Query:  PRPSTVNEVCSFLGLAGYYRRFVKNFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSDASKKGFGCVSMQQGKLVAYA
         RPSTV+EV SFLGLAGYYRRFV+NFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSDAS+KG GCV MQQGK+VAYA
Subjt:  PRPSTVNEVCSFLGLAGYYRRFVKNFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSDASKKGFGCVSMQQGKLVAYA

Query:  SRQLKSHEQN
        SRQLKSHEQN
Subjt:  SRQLKSHEQN

KAA0047433.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

3.8e-108

94.76

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Query:  MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSW
        MSFGLTNAPAVF+DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W
Subjt:  MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSW

Query:  PRPSTVNEVCSFLGLAGYYRRFVKNFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSDASKKGFGCVSMQQGKLVAYA
         RPSTV+EV SFLGLAGYYRRFV+NFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAP+LTVPDGSGSFVIYSDASKKG GCV MQQGK+VAYA
Subjt:  PRPSTVNEVCSFLGLAGYYRRFVKNFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSDASKKGFGCVSMQQGKLVAYA

Query:  SRQLKSHEQN
        SRQLKSHEQN
Subjt:  SRQLKSHEQN

KAA0048687.1 pol protein [Cucumis melo var. makuwa]

1.3e-108

95.24

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Query:  MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSW
        MSFGLTNAPAVF+DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W
Subjt:  MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSW

Query:  PRPSTVNEVCSFLGLAGYYRRFVKNFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSDASKKGFGCVSMQQGKLVAYA
         RPSTV+EV SFLGLAGYYRRFV+NFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAP+LTVPDGSGSFVIYSDASKKG GCV MQQGK+VAYA
Subjt:  PRPSTVNEVCSFLGLAGYYRRFVKNFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSDASKKGFGCVSMQQGKLVAYA

Query:  SRQLKSHEQN
        SRQLKSHEQN
Subjt:  SRQLKSHEQN

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SPZ2 Pol protein

1.8e-108

94.76

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Query:  MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSW
        MSFGLTNAPAVF+DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W
Subjt:  MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSW

Query:  PRPSTVNEVCSFLGLAGYYRRFVKNFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSDASKKGFGCVSMQQGKLVAYA
         RPSTV+EV SFLGLAGYYRRFV+NFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAP+LTVPDGSGSFVIYSDASKKG GCV MQQGK+VAYA
Subjt:  PRPSTVNEVCSFLGLAGYYRRFVKNFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSDASKKGFGCVSMQQGKLVAYA

Query:  SRQLKSHEQN
        SRQLKSHEQN
Subjt:  SRQLKSHEQN

A0A5A7TCQ5 Reverse transcriptase

1.8e-108

95.24

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Query:  MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSW
        MSFGLTNAPAVF+DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVD AKIEAVT W
Subjt:  MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSW

Query:  PRPSTVNEVCSFLGLAGYYRRFVKNFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSDASKKGFGCVSMQQGKLVAYA
         RPSTVNEV SFLGLAGYYRRFV+NFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAP+LTVPDGSGSFVIYSDASKKG GCV MQQGK+VAYA
Subjt:  PRPSTVNEVCSFLGLAGYYRRFVKNFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSDASKKGFGCVSMQQGKLVAYA

Query:  SRQLKSHEQN
        SRQLKSHEQN
Subjt:  SRQLKSHEQN

A0A5A7TLA3 Pol protein

3.7e-109

95.71

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Query:  MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSW
        MSFGLTNAPAVF+DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSW
Subjt:  MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSW

Query:  PRPSTVNEVCSFLGLAGYYRRFVKNFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSDASKKGFGCVSMQQGKLVAYA
         RPSTV+EV SFLGLAGYYRRFV+NFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSDAS+KG GCV MQQGK+VAYA
Subjt:  PRPSTVNEVCSFLGLAGYYRRFVKNFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSDASKKGFGCVSMQQGKLVAYA

Query:  SRQLKSHEQN
        SRQLKSHEQN
Subjt:  SRQLKSHEQN

A0A5A7TV57 Ty3-gypsy retrotransposon protein

1.8e-108

94.76

Show/hide

Query:  MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSW
        MSFGLTNAPAVF+DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W
Subjt:  MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSW

Query:  PRPSTVNEVCSFLGLAGYYRRFVKNFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSDASKKGFGCVSMQQGKLVAYA
         RPSTV+EV SFLGLAGYYRRFV+NFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAP+LTVPDGSGSFVIYSDASKKG GCV MQQGK+VAYA
Subjt:  PRPSTVNEVCSFLGLAGYYRRFVKNFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSDASKKGFGCVSMQQGKLVAYA

Query:  SRQLKSHEQN
        SRQLKSHEQN
Subjt:  SRQLKSHEQN

A0A5A7U330 Reverse transcriptase

6.3e-109

95.24

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Query:  MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSW
        MSFGLTNAPAVF+DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W
Subjt:  MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSW

Query:  PRPSTVNEVCSFLGLAGYYRRFVKNFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSDASKKGFGCVSMQQGKLVAYA
         RPSTV+EV SFLGLAGYYRRFV+NFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAP+LTVPDGSGSFVIYSDASKKG GCV MQQGK+VAYA
Subjt:  PRPSTVNEVCSFLGLAGYYRRFVKNFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSDASKKGFGCVSMQQGKLVAYA

Query:  SRQLKSHEQN
        SRQLKSHEQN
Subjt:  SRQLKSHEQN

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

4.3e-38

39.81

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Query:  MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSW
        M FGL NAPA F   MN + R  L+   +V++DDI+++S +  EH + L +V + L    L  +  KCEF  ++ +FLGHV++  G+  +P KIEA+  +
Subjt:  MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSW

Query:  PRPSTVNEVCSFLGLAGYYRRFVKNFSRIATPLTQLTRKGAPFVWSKACEDS-FQNLKQKLVTAPILTVPDGSGSFVIYSDASKKGFGCVSMQQGKLVAY
        P P+   E+ +FLGL GYYR+F+ NF+ IA P+T+  +K      +    DS F+ LK  +   PIL VPD +  F + +DAS    G V  Q G  ++Y
Subjt:  PRPSTVNEVCSFLGLAGYYRRFVKNFSRIATPLTQLTRKGAPFVWSKACEDS-FQNLKQKLVTAPILTVPDGSGSFVIYSDASKKGFGCVSMQQGKLVAY

Query:  ASRQLKSHEQN
         SR L  HE N
Subjt:  ASRQLKSHEQN

P0CT41 Transposon Tf2-12 polyprotein

9.5e-30

34.72

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Query:  MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSW
        M +G++ APA F   +N +  E  ++ V+ ++DDILI+SK+E+EH +H++ VLQ L++  L    +KCEF   QV F+G+ +S+ G +     I+ V  W
Subjt:  MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSW

Query:  PRPSTVNEVCSFLGLAGYYRRFVKNFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSDASKKGFGCVSMQQ
         +P    E+  FLG   Y R+F+   S++  PL  L +K   + W+     + +N+KQ LV+ P+L   D S   ++ +DAS    G V  Q+
Subjt:  PRPSTVNEVCSFLGLAGYYRRFVKNFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSDASKKGFGCVSMQQ

P10401 Retrovirus-related Pol polyprotein from transposon gypsy

3.7e-34

36.04

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Query:  MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSW
        + FGL NA ++F   ++ V RE +     V++DD++I+S+ E++H  H+  VL+ L D  +     K  F+ + V +LG +VSK G   DP K++A+  +
Subjt:  MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSW

Query:  PRPSTVNEVCSFLGLAGYYRRFVKNFSRIATPLTQLTR-----------KGAPFVWSKACEDSFQNLKQKLVTAP-ILTVPDGSGSFVIYSDASKKGFGC
        P P  V +V SFLGLA YYR F+K+F+ IA P+T + +           K  P  +++   ++FQ L+  L +   IL  PD    F + +DAS  G G 
Subjt:  PRPSTVNEVCSFLGLAGYYRRFVKNFSRIATPLTQLTR-----------KGAPFVWSKACEDSFQNLKQKLVTAP-ILTVPDGSGSFVIYSDASKKGFGC

Query:  VSMQQGKLVAYASRQLKSHEQN
        V  Q+G+ +   SR LK  EQN
Subjt:  VSMQQGKLVAYASRQLKSHEQN

P20825 Retrovirus-related Pol polyprotein from transposon 297

1.7e-39

38.86

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Query:  MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSW
        M FGL NAPA F   MN + R  L+   +V++DDI+I+S +  EH   +++V   L D  L  +  KCEF  K+ +FLGH+V+  G+  +P K++A+ S+
Subjt:  MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSW

Query:  PRPSTVNEVCSFLGLAGYYRRFVKNFSRIATPLTQLTRKGAPFVWSK-ACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSDASKKGFGCVSMQQGKLVAY
        P P+   E+ +FLGL GYYR+F+ N++ IA P+T   +K       K    ++F+ LK  ++  PIL +PD    FV+ +DAS    G V  Q G  +++
Subjt:  PRPSTVNEVCSFLGLAGYYRRFVKNFSRIATPLTQLTRKGAPFVWSK-ACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSDASKKGFGCVSMQQGKLVAY

Query:  ASRQLKSHEQN
         SR L  HE N
Subjt:  ASRQLKSHEQN

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

1.6e-32

34.22

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Query:  MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSW
        + FGL NAPA+F  +++ + RE +     V+IDDI+++S+    H ++LR+VL +L    L     K  F   QV FLG++V+  G+  DP K+ A++  
Subjt:  MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSW

Query:  PRPSTVNEVCSFLGLAGYYRRFVKNFSRIATPLTQLTR-----------KGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSDASKKGFGCV
        P P++V E+  FLG+  YYR+F+++++++A PLT LTR              P    +    SF +LK  L ++ IL  P  +  F + +DAS    G V
Subjt:  PRPSTVNEVCSFLGLAGYYRRFVKNFSRIATPLTQLTR-----------KGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSDASKKGFGCV

Query:  SMQ----QGKLVAYASRQLKSHEQN
          Q    + + +AY SR L   E+N
Subjt:  SMQ----QGKLVAYASRQLKSHEQN

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

7.0e-28

45.04

Show/hide

Query:  HLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLG--HVVSKAGVSVDPAKIEAVTSWPRPSTVNEVCSFLGLAGYYRRFVKNFSRIATPLTQLTRKGAPFVW
        HL MVLQ    ++ YA   KC F   Q+++LG  H++S  GVS DPAK+EA+  WP P    E+  FLGL GYYRRFVKN+ +I  PLT+L +K +   W
Subjt:  HLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLG--HVVSKAGVSVDPAKIEAVTSWPRPSTVNEVCSFLGLAGYYRRFVKNFSRIATPLTQLTRKGAPFVW

Query:  SKACEDSFQNLKQKLVTAPILTVPDGSGSFV
        ++    +F+ LK  + T P+L +PD    FV
Subjt:  SKACEDSFQNLKQKLVTAPILTVPDGSGSFV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCCTTTGGTTTGACGAATGCTCCGGCAGTGTTTTTGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGATGATATCTTGAT
ATATTCCAAGACAGAGGCCGAGCATGAGGAGCATTTACGTATGGTTCTACAAACCCTTCGGGATAATAAATTGTATGCAAAGTTCTCGAAATGTGAGTTTTGGCTGAAGC
AGGTGTCCTTTCTAGGCCATGTGGTTTCTAAGGCTGGAGTTTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCAGTTGGCCCCGACCTTCCACAGTCAATGAGGTTTGT
AGCTTTCTGGGTTTAGCCGGTTATTATCGACGGTTTGTGAAGAACTTTTCCCGTATAGCTACTCCTCTTACTCAGTTGACCAGGAAGGGAGCTCCTTTTGTTTGGAGCAA
GGCATGTGAGGACAGTTTCCAGAACCTTAAACAGAAGCTAGTTACTGCACCGATTCTTACTGTACCTGATGGTTCAGGCAGTTTTGTGATTTATAGTGATGCTTCTAAGA
AGGGTTTTGGTTGTGTATCGATGCAGCAAGGTAAGTTAGTCGCTTATGCTTCTCGTCAGTTGAAGAGTCATGAGCAGAATTAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVNEVC
SFLGLAGYYRRFVKNFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSDASKKGFGCVSMQQGKLVAYASRQLKSHEQN

Cmc12g0321801 (gene) of Melon (Charmono) v1.1 genome